Wall clock time and date at job start Tue Mar 31 2020 09:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47238 * 2 1 4 4 C 1.50703 * 109.54046 * 304.14644 * 3 2 1 5 5 O 1.21284 * 119.99830 * 268.75956 * 4 3 2 6 6 N 1.34776 * 119.99779 * 88.48671 * 4 3 2 7 7 C 1.39233 * 119.99637 * 176.30618 * 6 4 3 8 8 C 1.39475 * 119.83703 * 32.83854 * 7 6 4 9 9 C 1.36374 * 120.17002 * 179.71554 * 8 7 6 10 10 C 1.40873 * 119.82734 * 0.57081 * 9 8 7 11 11 C 1.41150 * 120.16336 * 179.67766 * 10 9 8 12 12 H 1.08001 * 120.00076 * 158.43848 * 11 10 9 13 13 C 1.39908 * 119.99959 * 338.44525 * 11 10 9 14 14 N 1.30875 * 119.99881 * 327.42179 * 13 11 10 15 15 Si 1.86797 * 119.99929 * 147.42357 * 13 11 10 16 16 H 1.48502 * 109.47032 * 94.99325 * 15 13 11 17 17 H 1.48504 * 109.47006 * 214.99197 * 15 13 11 18 18 H 1.48499 * 109.47605 * 334.99312 * 15 13 11 19 19 C 1.40866 * 119.67228 * 359.70157 * 10 9 8 20 20 C 1.36379 * 119.82878 * 359.97438 * 19 10 9 21 21 C 1.53176 * 109.54283 * 64.32547 * 3 2 1 22 22 C 1.53279 * 109.05908 * 176.85348 * 21 3 2 23 23 O 1.42908 * 109.46449 * 302.44130 * 22 21 3 24 24 C 1.42899 * 114.09383 * 61.16091 * 23 22 21 25 25 C 1.53093 * 109.41800 * 298.84601 * 24 23 22 26 26 H 1.09003 * 109.47182 * 70.26460 * 1 2 3 27 27 H 1.09003 * 109.47402 * 190.26625 * 1 2 3 28 28 H 1.08999 * 109.47372 * 310.26524 * 1 2 3 29 29 H 1.08999 * 109.47280 * 239.99704 * 2 1 3 30 30 H 1.09006 * 109.47436 * 120.00028 * 2 1 3 31 31 H 0.96998 * 120.00007 * 356.31384 * 6 4 3 32 32 H 1.07999 * 119.91086 * 359.97260 * 8 7 6 33 33 H 1.08007 * 120.08597 * 180.25276 * 9 8 7 34 34 H 0.97001 * 119.99568 * 180.02562 * 14 13 11 35 35 H 1.07992 * 120.08484 * 179.97438 * 19 10 9 36 36 H 1.07996 * 119.91850 * 180.02562 * 20 19 10 37 37 H 1.08993 * 109.52387 * 296.84176 * 21 3 2 38 38 H 1.08996 * 109.52232 * 57.03301 * 21 3 2 39 39 H 1.09004 * 109.45578 * 182.45069 * 22 21 3 40 40 H 1.08997 * 109.47307 * 62.45267 * 22 21 3 41 41 H 1.08993 * 109.48253 * 178.86300 * 24 23 22 42 42 H 1.09002 * 109.49344 * 58.83094 * 24 23 22 43 43 H 1.09012 * 109.52088 * 297.70349 * 25 24 23 44 44 H 1.09000 * 109.57737 * 177.54640 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4564 2.1835 -1.1754 5 8 2.0521 2.2107 -2.2315 6 7 0.2699 2.8112 -1.0545 7 6 -0.2328 3.5598 -2.1154 8 6 0.0326 3.1689 -3.4277 9 6 -0.4612 3.8938 -4.4720 10 6 -1.2312 5.0468 -4.2225 11 6 -1.7402 5.8061 -5.2980 12 1 -2.5883 6.4571 -5.1458 13 6 -1.1460 5.7153 -6.5614 14 7 0.1409 5.5012 -6.6654 15 14 -2.1895 5.8996 -8.0997 16 1 -2.1373 7.3081 -8.5674 17 1 -1.6658 5.0052 -9.1632 18 1 -3.5949 5.5321 -7.7916 19 6 -1.4903 5.4384 -2.8945 20 6 -0.9953 4.6997 -1.8605 21 6 1.6211 2.1341 1.3010 22 6 2.2039 3.5516 1.3244 23 8 3.6257 3.4840 1.1968 24 6 4.0743 2.8884 -0.0222 25 6 3.5685 1.4456 -0.1000 26 1 -0.3634 0.3470 -0.9673 27 1 -0.3634 -1.0112 0.1832 28 1 -0.3634 0.6642 0.7842 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 -0.2337 2.7416 -0.2284 32 1 0.6274 2.2876 -3.6173 33 1 -0.2582 3.5875 -5.4876 34 1 0.5529 5.4386 -7.5414 35 1 -2.0795 6.3214 -2.6956 36 1 -1.1934 4.9984 -0.8417 37 1 0.5336 2.1842 1.3531 38 1 2.0019 1.5699 2.1523 39 1 1.9462 4.0345 2.2671 40 1 1.7915 4.1277 0.4962 41 1 5.1639 2.8935 -0.0499 42 1 3.6865 3.4556 -0.8684 43 1 3.9885 0.8674 0.7232 44 1 3.8723 1.0026 -1.0485 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330721957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:01 Heat of formation + Delta-G solvation = -72.612479 kcal Electronic energy + Delta-G solvation = -25670.808380 eV Core-core repulsion = 22166.277565 eV Total energy + Delta-G solvation = -3504.530814 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97839 -38.45318 -37.13283 -35.42455 -34.55202 -33.02318 -31.13714 -30.83958 -29.49538 -29.02075 -25.88022 -25.08333 -23.62693 -22.52159 -21.70864 -21.33212 -20.38460 -18.72859 -17.36568 -17.01495 -16.23266 -16.03403 -15.88273 -15.28862 -15.07493 -14.52832 -14.40140 -14.16273 -13.92903 -13.45671 -13.16386 -12.87644 -12.74099 -12.39744 -12.33398 -12.11731 -12.02856 -11.93189 -11.50571 -11.38930 -11.33802 -11.14699 -11.13172 -10.98129 -10.54325 -10.45609 -10.34137 -10.05145 -9.82458 -9.52475 -9.31962 -8.98267 -8.58827 -7.53723 -7.14853 -6.85142 -4.26301 2.58805 2.96164 3.05551 3.09074 3.12794 3.37551 3.70015 3.89408 3.90520 4.40942 4.51054 4.57312 4.71385 4.91834 5.02710 5.18491 5.25114 5.27596 5.37733 5.48211 5.55905 5.66169 5.68316 5.76907 5.81750 5.84223 5.94288 5.99127 6.07214 6.12082 6.14284 6.19678 6.41999 6.79959 6.96349 7.04659 7.09716 7.19887 7.29300 7.57070 7.65856 7.94170 8.03914 8.21348 8.31451 8.58579 8.78595 8.84400 9.00970 10.03969 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023269 B = 0.003701 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.018506 B = 7563.578413 C = 7653.735133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.078 4.078 4 C 0.510 3.490 5 O -0.528 6.528 6 N -0.647 5.647 7 C -0.021 4.021 8 C -0.079 4.079 9 C -0.174 4.174 10 C 0.111 3.889 11 C -0.467 4.467 12 H 0.081 0.919 13 C 0.088 3.912 14 N -0.764 5.764 15 Si 0.895 3.105 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.257 1.257 19 C -0.222 4.222 20 C -0.098 4.098 21 C -0.148 4.148 22 C 0.053 3.947 23 O -0.383 6.383 24 C 0.055 3.945 25 C -0.130 4.130 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.391 0.609 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.284 0.716 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 -8.302 12.992 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.143 4.143 3 C -0.082 4.082 4 C 0.296 3.704 5 O -0.405 6.405 6 N -0.290 5.290 7 C -0.113 4.113 8 C -0.099 4.099 9 C -0.194 4.194 10 C 0.108 3.892 11 C -0.495 4.495 12 H 0.099 0.901 13 C -0.135 4.135 14 N -0.387 5.387 15 Si 0.719 3.281 16 H -0.195 1.195 17 H -0.199 1.199 18 H -0.181 1.181 19 C -0.242 4.242 20 C -0.118 4.118 21 C -0.186 4.186 22 C -0.024 4.024 23 O -0.302 6.302 24 C -0.022 4.022 25 C -0.168 4.168 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.226 0.774 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.377 -8.222 12.225 15.115 hybrid contribution -0.824 -0.012 -0.561 0.997 sum 2.553 -8.234 11.664 14.504 Atomic orbital electron populations 1.21978 0.95362 1.02016 1.02752 1.21490 0.96378 0.93630 1.02835 1.20937 0.96899 0.96503 0.93833 1.20256 0.80893 0.79936 0.89299 1.90678 1.60681 1.60380 1.28750 1.43131 1.19742 1.49593 1.16562 1.17130 1.10021 0.97495 0.86640 1.20527 0.98679 0.99532 0.91119 1.20743 1.04483 0.96836 0.97363 1.17592 0.89114 0.90786 0.91677 1.19493 1.13787 1.23162 0.93030 0.90082 1.25951 0.94258 0.92009 1.01253 1.69964 1.10461 1.31105 1.27143 0.86521 0.81988 0.79020 0.80610 1.19467 1.19868 1.18108 1.20456 1.09552 1.01558 0.92587 1.20032 1.00538 0.94009 0.97217 1.22401 1.01358 0.97626 0.97192 1.22707 0.81671 0.95489 1.02557 1.87883 1.21181 1.81369 1.39769 1.22658 0.99720 0.92613 0.87204 1.22053 0.92793 0.98448 1.03522 0.91825 0.92294 0.92354 0.91102 0.90997 0.77392 0.87385 0.87662 0.90519 0.88748 0.89420 0.90425 0.90041 0.88723 0.92350 0.88795 0.92052 0.90651 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.75 37.15 0.32 -1.39 16 2 C -0.11 -1.13 4.99 -26.73 -0.13 -1.27 16 3 C -0.08 -0.99 0.52 -155.47 -0.08 -1.07 16 4 C 0.51 8.76 3.79 -10.98 -0.04 8.72 16 5 O -0.53 -11.39 12.71 5.55 0.07 -11.32 16 6 N -0.65 -11.13 3.71 -9.74 -0.04 -11.17 16 7 C -0.02 -0.46 6.35 -83.57 -0.53 -0.99 16 8 C -0.08 -1.95 8.63 -39.79 -0.34 -2.29 16 9 C -0.17 -4.65 8.74 -39.26 -0.34 -5.00 16 10 C 0.11 2.97 5.58 -106.80 -0.60 2.37 16 11 C -0.47 -12.35 8.94 -37.85 -0.34 -12.69 16 12 H 0.08 2.05 8.02 -52.49 -0.42 1.63 16 13 C 0.09 2.20 4.77 -17.33 -0.08 2.11 16 14 N -0.76 -19.98 11.76 55.55 0.65 -19.33 16 15 Si 0.90 18.37 29.66 -169.99 -5.04 13.33 16 16 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 19 C -0.22 -5.37 9.74 -39.26 -0.38 -5.75 16 20 C -0.10 -2.13 9.89 -39.79 -0.39 -2.52 16 21 C -0.15 -1.56 4.24 -26.50 -0.11 -1.67 16 22 C 0.05 0.65 6.60 37.30 0.25 0.90 16 23 O -0.38 -5.42 10.77 -35.23 -0.38 -5.80 16 24 C 0.05 0.76 6.60 37.21 0.25 1.00 16 25 C -0.13 -1.62 4.60 -26.59 -0.12 -1.75 16 26 H 0.06 0.83 7.15 -51.93 -0.37 0.46 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.53 5.97 -51.93 -0.31 0.22 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.39 5.44 6.30 -40.82 -0.26 5.18 16 32 H 0.11 2.70 6.04 -52.49 -0.32 2.39 16 33 H 0.11 2.90 6.50 -52.48 -0.34 2.56 16 34 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 35 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.08 0.71 4.94 -51.93 -0.26 0.45 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.86 6.92 -51.93 -0.36 0.50 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.04 6.89 -51.93 -0.36 0.68 16 43 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.09 1.15 7.76 -51.93 -0.40 0.74 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -30.10 340.55 -8.62 -38.71 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -6.33 Total: 11.72 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -2.68 Total: -21.28 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.62 Total: -30.50 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.31 Total: -17.12 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.04 Total: 13.33 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.10 -8.62 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330721957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.898 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds