Wall clock time and date at job start Tue Mar 31 2020 09:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47238 * 2 1 4 4 C 1.50703 * 109.54046 * 304.14644 * 3 2 1 5 5 O 1.21284 * 119.99830 * 268.75956 * 4 3 2 6 6 N 1.34776 * 119.99779 * 88.48671 * 4 3 2 7 7 C 1.39233 * 119.99637 * 176.30618 * 6 4 3 8 8 C 1.39475 * 119.83703 * 32.83854 * 7 6 4 9 9 C 1.36374 * 120.17002 * 179.71554 * 8 7 6 10 10 C 1.40873 * 119.82734 * 0.57081 * 9 8 7 11 11 C 1.41150 * 120.16336 * 179.67766 * 10 9 8 12 12 H 1.08001 * 120.00076 * 158.43848 * 11 10 9 13 13 C 1.39908 * 119.99959 * 338.44525 * 11 10 9 14 14 N 1.30875 * 119.99881 * 327.42179 * 13 11 10 15 15 Si 1.86797 * 119.99929 * 147.42357 * 13 11 10 16 16 H 1.48502 * 109.47032 * 94.99325 * 15 13 11 17 17 H 1.48504 * 109.47006 * 214.99197 * 15 13 11 18 18 H 1.48499 * 109.47605 * 334.99312 * 15 13 11 19 19 C 1.40866 * 119.67228 * 359.70157 * 10 9 8 20 20 C 1.36379 * 119.82878 * 359.97438 * 19 10 9 21 21 C 1.53176 * 109.54283 * 64.32547 * 3 2 1 22 22 C 1.53279 * 109.05908 * 176.85348 * 21 3 2 23 23 O 1.42908 * 109.46449 * 302.44130 * 22 21 3 24 24 C 1.42899 * 114.09383 * 61.16091 * 23 22 21 25 25 C 1.53093 * 109.41800 * 298.84601 * 24 23 22 26 26 H 1.09003 * 109.47182 * 70.26460 * 1 2 3 27 27 H 1.09003 * 109.47402 * 190.26625 * 1 2 3 28 28 H 1.08999 * 109.47372 * 310.26524 * 1 2 3 29 29 H 1.08999 * 109.47280 * 239.99704 * 2 1 3 30 30 H 1.09006 * 109.47436 * 120.00028 * 2 1 3 31 31 H 0.96998 * 120.00007 * 356.31384 * 6 4 3 32 32 H 1.07999 * 119.91086 * 359.97260 * 8 7 6 33 33 H 1.08007 * 120.08597 * 180.25276 * 9 8 7 34 34 H 0.97001 * 119.99568 * 180.02562 * 14 13 11 35 35 H 1.07992 * 120.08484 * 179.97438 * 19 10 9 36 36 H 1.07996 * 119.91850 * 180.02562 * 20 19 10 37 37 H 1.08993 * 109.52387 * 296.84176 * 21 3 2 38 38 H 1.08996 * 109.52232 * 57.03301 * 21 3 2 39 39 H 1.09004 * 109.45578 * 182.45069 * 22 21 3 40 40 H 1.08997 * 109.47307 * 62.45267 * 22 21 3 41 41 H 1.08993 * 109.48253 * 178.86300 * 24 23 22 42 42 H 1.09002 * 109.49344 * 58.83094 * 24 23 22 43 43 H 1.09012 * 109.52088 * 297.70349 * 25 24 23 44 44 H 1.09000 * 109.57737 * 177.54640 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4564 2.1835 -1.1754 5 8 2.0521 2.2107 -2.2315 6 7 0.2699 2.8112 -1.0545 7 6 -0.2328 3.5598 -2.1154 8 6 0.0326 3.1689 -3.4277 9 6 -0.4612 3.8938 -4.4720 10 6 -1.2312 5.0468 -4.2225 11 6 -1.7402 5.8061 -5.2980 12 1 -2.5883 6.4571 -5.1458 13 6 -1.1460 5.7153 -6.5614 14 7 0.1409 5.5012 -6.6654 15 14 -2.1895 5.8996 -8.0997 16 1 -2.1373 7.3081 -8.5674 17 1 -1.6658 5.0052 -9.1632 18 1 -3.5949 5.5321 -7.7916 19 6 -1.4903 5.4384 -2.8945 20 6 -0.9953 4.6997 -1.8605 21 6 1.6211 2.1341 1.3010 22 6 2.2039 3.5516 1.3244 23 8 3.6257 3.4840 1.1968 24 6 4.0743 2.8884 -0.0222 25 6 3.5685 1.4456 -0.1000 26 1 -0.3634 0.3470 -0.9673 27 1 -0.3634 -1.0112 0.1832 28 1 -0.3634 0.6642 0.7842 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 -0.2337 2.7416 -0.2284 32 1 0.6274 2.2876 -3.6173 33 1 -0.2582 3.5875 -5.4876 34 1 0.5529 5.4386 -7.5414 35 1 -2.0795 6.3214 -2.6956 36 1 -1.1934 4.9984 -0.8417 37 1 0.5336 2.1842 1.3531 38 1 2.0019 1.5699 2.1523 39 1 1.9462 4.0345 2.2671 40 1 1.7915 4.1277 0.4962 41 1 5.1639 2.8935 -0.0499 42 1 3.6865 3.4556 -0.8684 43 1 3.9885 0.8674 0.7232 44 1 3.8723 1.0026 -1.0485 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330721957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:00 Heat of formation + Delta-G solvation = -90.575597 kcal Electronic energy + Delta-G solvation = -25671.587319 eV Core-core repulsion = 22166.277565 eV Total energy + Delta-G solvation = -3505.309754 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.23042 -39.92043 -38.74407 -36.54907 -36.27154 -34.76480 -32.17903 -31.78095 -31.41026 -30.82692 -27.24509 -26.51847 -24.65883 -23.91930 -23.22850 -22.64394 -22.07512 -20.15048 -19.27986 -18.34363 -17.71113 -17.24691 -17.04388 -16.82139 -16.35756 -15.81233 -15.77822 -15.54482 -15.12834 -15.01978 -14.49202 -14.23141 -14.14651 -14.00336 -13.84588 -13.42540 -13.29333 -13.27856 -12.90734 -12.82262 -12.75817 -12.35969 -12.32795 -12.27316 -12.04660 -11.85351 -11.64798 -11.42318 -11.33839 -11.12131 -10.72421 -10.50842 -10.27398 -9.47741 -9.02290 -8.71456 -6.23801 0.82224 1.11915 1.34050 1.41071 1.52835 1.82261 2.16416 2.33495 2.65122 2.89466 3.43417 3.57441 3.69377 3.73004 3.96663 3.98416 4.23040 4.31491 4.39248 4.43772 4.45667 4.48229 4.54639 4.61173 4.74006 4.84046 4.91058 4.92282 5.00072 5.02628 5.07334 5.08745 5.13005 5.16594 5.25173 5.25585 5.37649 5.43606 5.65516 5.82947 6.07023 6.07475 6.16594 6.31756 6.63739 6.74383 6.88090 6.99166 7.43214 8.19272 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023269 B = 0.003701 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.018506 B = 7563.578413 C = 7653.735133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.102 4.102 3 C -0.072 4.072 4 C 0.508 3.492 5 O -0.578 6.578 6 N -0.637 5.637 7 C -0.005 4.005 8 C -0.093 4.093 9 C -0.200 4.200 10 C 0.080 3.920 11 C -0.504 4.504 12 H 0.084 0.916 13 C 0.046 3.954 14 N -0.807 5.807 15 Si 0.974 3.026 16 H -0.257 1.257 17 H -0.268 1.268 18 H -0.255 1.255 19 C -0.232 4.232 20 C -0.093 4.093 21 C -0.141 4.141 22 C 0.045 3.955 23 O -0.391 6.391 24 C 0.055 3.945 25 C -0.128 4.128 26 H 0.028 0.972 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.412 0.588 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.291 0.709 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.028 0.972 41 H 0.110 0.890 42 H 0.018 0.982 43 H 0.109 0.891 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 -9.253 16.131 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.139 4.139 3 C -0.075 4.075 4 C 0.297 3.703 5 O -0.457 6.457 6 N -0.283 5.283 7 C -0.099 4.099 8 C -0.113 4.113 9 C -0.220 4.220 10 C 0.078 3.922 11 C -0.532 4.532 12 H 0.102 0.898 13 C -0.172 4.172 14 N -0.430 5.430 15 Si 0.793 3.207 16 H -0.181 1.181 17 H -0.193 1.193 18 H -0.178 1.178 19 C -0.251 4.251 20 C -0.113 4.113 21 C -0.179 4.179 22 C -0.032 4.032 23 O -0.310 6.310 24 C -0.022 4.022 25 C -0.166 4.166 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.250 0.750 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.150 0.850 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.046 0.954 41 H 0.128 0.872 42 H 0.036 0.964 43 H 0.128 0.872 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.689 -9.180 15.416 18.143 hybrid contribution -0.516 0.243 -1.385 1.498 sum 2.173 -8.937 14.031 16.777 Atomic orbital electron populations 1.21992 0.95081 1.03566 1.01490 1.21528 0.96572 0.91991 1.03854 1.21007 0.96677 0.97275 0.92556 1.21253 0.80115 0.78805 0.90103 1.90664 1.61862 1.61880 1.31343 1.43035 1.20201 1.48958 1.16073 1.17212 1.08326 0.97469 0.86861 1.20562 0.98957 0.99318 0.92482 1.20647 1.06406 0.98078 0.96825 1.17918 0.89949 0.91111 0.93268 1.19760 1.14598 1.24454 0.94382 0.89823 1.26857 0.95113 0.91002 1.04270 1.70004 1.12277 1.32411 1.28357 0.85345 0.79761 0.79523 0.76055 1.18120 1.19253 1.17800 1.20738 1.09761 1.02363 0.92276 1.20391 0.99101 0.92988 0.98824 1.22443 1.02593 0.96292 0.96522 1.22905 0.80769 0.96745 1.02760 1.87876 1.22371 1.81559 1.39178 1.22619 1.00670 0.92990 0.85877 1.22069 0.92827 0.97605 1.04055 0.95244 0.90489 0.90337 0.92747 0.87305 0.74975 0.88534 0.90013 0.89825 0.87379 0.85000 0.88463 0.86853 0.85904 0.95373 0.87174 0.96357 0.87247 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 8.75 71.98 0.63 -2.30 16 2 C -0.10 -1.86 4.99 30.59 0.15 -1.71 16 3 C -0.07 -1.64 0.52 -52.81 -0.03 -1.67 16 4 C 0.51 17.39 3.79 87.66 0.33 17.72 16 5 O -0.58 -26.08 12.71 -3.04 -0.04 -26.12 16 6 N -0.64 -21.33 3.71 -303.11 -1.12 -22.45 16 7 C -0.01 -0.24 6.35 38.57 0.24 0.01 16 8 C -0.09 -4.86 8.63 22.13 0.19 -4.67 16 9 C -0.20 -11.34 8.74 22.48 0.20 -11.14 16 10 C 0.08 4.47 5.58 -21.28 -0.12 4.35 16 11 C -0.50 -27.76 8.94 23.39 0.21 -27.55 16 12 H 0.08 4.37 8.02 -2.91 -0.02 4.35 16 13 C 0.05 2.41 4.77 85.24 0.41 2.81 16 14 N -0.81 -44.38 11.76 21.82 0.26 -44.12 16 15 Si 0.97 38.71 29.66 68.60 2.03 40.74 16 16 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 17 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 19 C -0.23 -11.31 9.74 22.48 0.22 -11.10 16 20 C -0.09 -3.96 9.89 22.14 0.22 -3.74 16 21 C -0.14 -2.34 4.24 30.75 0.13 -2.21 16 22 C 0.04 0.97 6.60 72.08 0.48 1.45 16 23 O -0.39 -10.22 10.77 -148.98 -1.60 -11.83 16 24 C 0.06 1.50 6.60 72.01 0.48 1.97 16 25 C -0.13 -2.95 4.60 30.69 0.14 -2.81 16 26 H 0.03 0.72 7.15 -2.39 -0.02 0.71 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 1.07 5.97 -2.39 -0.01 1.05 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.41 10.30 6.30 -92.71 -0.58 9.71 16 32 H 0.10 5.18 6.04 -2.91 -0.02 5.17 16 33 H 0.08 4.89 6.50 -2.91 -0.02 4.87 16 34 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 35 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 36 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.10 1.25 4.94 -2.39 -0.01 1.24 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.03 0.78 6.92 -2.39 -0.02 0.76 16 41 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.02 0.64 6.89 -2.39 -0.02 0.63 16 43 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.07 1.85 7.76 -2.39 -0.02 1.83 16 Total: -1.00 -71.56 340.55 3.83 -67.73 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: 0.43 Total: 36.63 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 3.88 Total: -40.58 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -0.87 Total: -66.58 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -1.64 Total: -37.94 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -71.56 3.83 -67.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330721957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.843 kcal (2) G-P(sol) polarization free energy of solvation -71.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds