Wall clock time and date at job start Tue Mar 31 2020 08:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38241 * 119.99445 * 179.78505 * 4 3 2 6 6 C 1.38237 * 120.00094 * 0.44350 * 5 4 3 7 7 C 1.50695 * 119.99780 * 179.83233 * 6 5 4 8 8 H 1.09004 * 109.47205 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47286 * 59.97640 * 7 6 5 10 10 C 1.50700 * 109.47234 * 299.97837 * 7 6 5 11 11 O 1.21276 * 120.00060 * 359.97438 * 10 7 6 12 12 N 1.34779 * 119.99782 * 180.02562 * 10 7 6 13 13 C 1.47062 * 136.06122 * 359.62130 * 12 10 7 14 14 C 1.53756 * 87.88860 * 152.96971 * 13 12 10 15 15 O 1.42904 * 114.38999 * 272.67800 * 14 13 12 16 16 C 1.50696 * 114.26773 * 139.79398 * 14 13 12 17 17 H 1.07994 * 120.00250 * 266.47608 * 16 14 13 18 18 C 1.37885 * 119.99723 * 86.47657 * 16 14 13 19 19 N 1.31512 * 120.00386 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99673 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46970 * 59.99883 * 20 18 16 22 22 H 1.48503 * 109.46895 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46865 * 299.99599 * 20 18 16 24 24 C 1.47067 * 136.05427 * 180.02562 * 12 10 7 25 25 C 1.38232 * 120.00002 * 359.80704 * 6 5 4 26 26 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 32 32 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 33 33 H 1.07994 * 119.99617 * 180.27281 * 5 4 3 34 34 H 1.09001 * 109.47400 * 179.97438 * 9 7 6 35 35 H 1.09000 * 109.47220 * 300.00371 * 9 7 6 36 36 H 1.09001 * 109.47115 * 59.99729 * 9 7 6 37 37 H 1.08999 * 113.47227 * 267.70152 * 13 12 10 38 38 H 1.09004 * 113.46748 * 38.13922 * 13 12 10 39 39 H 0.96693 * 114.00155 * 273.58069 * 15 14 13 40 40 H 0.96996 * 120.00050 * 179.97438 * 19 18 16 41 41 H 1.09000 * 113.46582 * 321.85728 * 24 12 10 42 42 H 1.09003 * 113.47341 * 92.23976 * 24 12 10 43 43 H 1.07996 * 119.99997 * 180.02562 * 25 6 5 44 44 H 1.08004 * 119.99828 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7247 3.3754 -1.1972 6 6 2.9542 4.0273 -0.0001 7 6 3.4556 5.4484 -0.0001 8 1 3.5757 5.7914 1.0275 9 6 2.4477 6.3448 -0.7224 10 6 4.7836 5.5126 -0.7096 11 8 5.2748 4.5037 -1.1695 12 7 5.4258 6.6912 -0.8322 13 6 5.1697 8.0833 -0.4332 14 6 6.6922 8.2958 -0.4061 15 8 7.3121 7.9660 0.8386 16 6 7.1425 9.6218 -0.9628 17 1 7.4267 9.7029 -2.0016 18 6 7.1916 10.7316 -0.1460 19 7 6.8450 10.6330 1.1188 20 14 7.7491 12.3754 -0.8363 21 1 6.8423 12.7820 -1.9399 22 1 7.7125 13.4011 0.2370 23 1 9.1349 12.2501 -1.3550 24 6 6.6879 7.1522 -1.4301 25 6 2.7234 3.3759 1.1971 26 6 2.2627 2.0726 1.1971 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.0927 1.5597 -2.1324 33 1 2.9047 3.8844 -2.1325 34 1 2.8101 7.3728 -0.7221 35 1 2.3275 6.0018 -1.7500 36 1 1.4871 6.2984 -0.2093 37 1 4.6633 8.6687 -1.2006 38 1 4.6996 8.1747 0.5461 39 1 7.3130 8.6885 1.4811 40 1 6.8799 11.4137 1.6935 41 1 7.5115 6.4502 -1.3004 42 1 6.5817 7.4914 -2.4606 43 1 2.9023 3.8854 2.1323 44 1 2.0823 1.5636 2.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332459809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:05 Heat of formation + Delta-G solvation = -37.791184 kcal Electronic energy + Delta-G solvation = -24583.766818 eV Core-core repulsion = 21080.745968 eV Total energy + Delta-G solvation = -3503.020850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.12064 -39.13296 -37.42166 -34.90523 -34.03814 -32.57881 -32.20304 -30.80805 -29.02703 -28.08164 -25.54930 -25.08653 -24.60843 -22.80889 -22.58360 -20.75087 -19.76836 -18.25934 -17.36957 -16.49521 -16.21516 -15.56505 -15.36690 -15.13055 -14.70956 -14.52204 -14.11982 -13.86176 -13.79195 -13.48737 -13.17853 -13.05610 -12.87419 -12.56619 -12.42860 -12.25913 -11.96755 -11.72379 -11.57963 -11.52771 -11.39290 -11.14894 -11.05579 -11.02171 -10.71351 -10.67805 -10.51016 -10.27928 -9.57746 -9.15523 -8.80032 -8.72858 -8.41385 -8.35453 -7.83195 -6.42086 -4.52438 1.43753 1.57163 3.14497 3.20604 3.21353 3.23679 3.53215 3.95045 4.16658 4.65755 4.77042 4.80419 4.84115 4.94842 5.10427 5.16330 5.21588 5.34707 5.39516 5.43741 5.55955 5.59066 5.61518 5.72015 5.80492 5.87378 5.89211 5.98515 6.00313 6.14288 6.16198 6.21189 6.24499 6.41255 6.48832 6.53983 6.65226 6.67326 6.69730 6.80694 7.09469 7.14092 7.61056 7.79112 8.49661 8.54473 8.79629 9.18924 9.47735 10.64473 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.039277 B = 0.002829 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.711925 B = 9893.599874 C = 9949.089937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.089 4.089 4 C -0.121 4.121 5 C -0.080 4.080 6 C -0.061 4.061 7 C -0.067 4.067 8 H 0.100 0.900 9 C -0.139 4.139 10 C 0.540 3.460 11 O -0.556 6.556 12 N -0.633 5.633 13 C 0.072 3.928 14 C 0.240 3.760 15 O -0.571 6.571 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.909 3.091 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.106 3.894 25 C -0.110 4.110 26 C -0.122 4.122 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.394 0.606 40 H 0.274 0.726 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.120 0.880 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.212 -11.304 -0.649 16.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.139 4.139 5 C -0.098 4.098 6 C -0.062 4.062 7 C -0.088 4.088 8 H 0.118 0.882 9 C -0.197 4.197 10 C 0.329 3.671 11 O -0.435 6.435 12 N -0.366 5.366 13 C -0.051 4.051 14 C 0.198 3.802 15 O -0.384 6.384 16 C -0.572 4.572 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.736 3.264 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.016 4.016 25 C -0.128 4.128 26 C -0.140 4.140 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.250 0.750 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.138 0.862 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.996 -12.489 -0.975 17.345 hybrid contribution 0.167 1.534 0.034 1.543 sum -11.830 -10.956 -0.940 16.151 Atomic orbital electron populations 1.21744 0.94934 1.01401 1.02202 1.20512 0.95979 0.92954 1.02622 1.19821 0.99787 0.96014 0.93296 1.20929 1.00800 0.94856 0.97303 1.20880 0.96772 0.94480 0.97650 1.19368 0.98726 0.94546 0.93526 1.20189 0.93352 0.93584 1.01680 0.88170 1.21793 0.98089 0.99511 1.00296 1.19821 0.85387 0.81831 0.80046 1.90652 1.68010 1.33963 1.50918 1.49687 1.23484 1.07086 1.56352 1.24247 1.03626 0.78103 0.99139 1.19583 0.86884 0.90680 0.83031 1.86049 1.80671 1.45097 1.26580 1.21399 1.46042 0.92401 0.97332 0.91008 1.25080 0.93411 0.99788 0.94773 1.69252 1.47712 1.31680 1.05251 0.86369 0.79532 0.81825 0.78688 1.19874 1.20982 1.19825 1.23316 0.85045 0.95314 0.97905 1.21000 0.99612 0.94869 0.97315 1.20880 1.01034 0.94771 0.97302 0.92642 0.92592 0.92602 0.91248 0.91232 0.86472 0.86430 0.91117 0.92249 0.91657 0.90113 0.91779 0.75003 0.91515 0.91672 0.89815 0.86175 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.79 16 2 C -0.08 -0.77 6.07 -27.88 -0.17 -0.94 16 3 C -0.09 -1.09 5.13 -104.62 -0.54 -1.62 16 4 C -0.12 -1.60 9.70 -39.58 -0.38 -1.98 16 5 C -0.08 -1.21 7.93 -39.58 -0.31 -1.52 16 6 C -0.06 -0.95 4.40 -104.63 -0.46 -1.41 16 7 C -0.07 -1.08 2.78 -92.93 -0.26 -1.34 16 8 H 0.10 1.56 7.88 -51.93 -0.41 1.15 16 9 C -0.14 -1.90 8.89 37.16 0.33 -1.57 16 10 C 0.54 10.99 7.27 -10.98 -0.08 10.91 16 11 O -0.56 -12.91 15.89 5.56 0.09 -12.82 16 12 N -0.63 -13.26 3.64 -185.06 -0.67 -13.93 16 13 C 0.07 1.50 6.15 -8.38 -0.05 1.45 16 14 C 0.24 5.69 1.58 -91.12 -0.14 5.55 16 15 O -0.57 -14.68 13.55 -35.23 -0.48 -15.16 16 16 C -0.53 -13.14 8.70 -34.44 -0.30 -13.44 16 17 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 18 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 19 N -0.90 -22.38 11.01 55.43 0.61 -21.77 16 20 Si 0.91 19.12 29.54 -169.99 -5.02 14.10 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 24 C 0.11 2.33 8.02 -8.51 -0.07 2.26 16 25 C -0.11 -1.53 9.67 -39.58 -0.38 -1.92 16 26 C -0.12 -1.52 9.70 -39.58 -0.38 -1.91 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.12 1.80 7.52 -52.49 -0.39 1.41 16 34 H 0.07 0.99 6.33 -51.93 -0.33 0.67 16 35 H 0.06 0.79 7.39 -51.93 -0.38 0.41 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.59 8.06 -51.93 -0.42 1.17 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.39 10.18 6.32 45.56 0.29 10.47 16 40 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 41 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 43 H 0.12 1.48 7.95 -52.49 -0.42 1.07 16 44 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -28.40 363.03 -9.18 -37.58 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.25 Total: 13.14 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.93 Total: -6.61 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.06 Total: -35.70 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.39 Total: -27.97 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.40 -9.18 -37.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332459809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.210 kcal (2) G-P(sol) polarization free energy of solvation -28.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds