Wall clock time and date at job start Tue Mar 31 2020 08:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38241 * 119.99445 * 179.78505 * 4 3 2 6 6 C 1.38237 * 120.00094 * 0.44350 * 5 4 3 7 7 C 1.50695 * 119.99780 * 179.83233 * 6 5 4 8 8 H 1.09004 * 109.47205 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47286 * 59.97640 * 7 6 5 10 10 C 1.50700 * 109.47234 * 299.97837 * 7 6 5 11 11 O 1.21276 * 120.00060 * 359.97438 * 10 7 6 12 12 N 1.34779 * 119.99782 * 180.02562 * 10 7 6 13 13 C 1.47062 * 136.06122 * 359.62130 * 12 10 7 14 14 C 1.53756 * 87.88860 * 152.96971 * 13 12 10 15 15 O 1.42904 * 114.38999 * 272.67800 * 14 13 12 16 16 C 1.50696 * 114.26773 * 139.79398 * 14 13 12 17 17 H 1.07994 * 120.00250 * 266.47608 * 16 14 13 18 18 C 1.37885 * 119.99723 * 86.47657 * 16 14 13 19 19 N 1.31512 * 120.00386 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99673 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46970 * 59.99883 * 20 18 16 22 22 H 1.48503 * 109.46895 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46865 * 299.99599 * 20 18 16 24 24 C 1.47067 * 136.05427 * 180.02562 * 12 10 7 25 25 C 1.38232 * 120.00002 * 359.80704 * 6 5 4 26 26 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 32 32 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 33 33 H 1.07994 * 119.99617 * 180.27281 * 5 4 3 34 34 H 1.09001 * 109.47400 * 179.97438 * 9 7 6 35 35 H 1.09000 * 109.47220 * 300.00371 * 9 7 6 36 36 H 1.09001 * 109.47115 * 59.99729 * 9 7 6 37 37 H 1.08999 * 113.47227 * 267.70152 * 13 12 10 38 38 H 1.09004 * 113.46748 * 38.13922 * 13 12 10 39 39 H 0.96693 * 114.00155 * 273.58069 * 15 14 13 40 40 H 0.96996 * 120.00050 * 179.97438 * 19 18 16 41 41 H 1.09000 * 113.46582 * 321.85728 * 24 12 10 42 42 H 1.09003 * 113.47341 * 92.23976 * 24 12 10 43 43 H 1.07996 * 119.99997 * 180.02562 * 25 6 5 44 44 H 1.08004 * 119.99828 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7247 3.3754 -1.1972 6 6 2.9542 4.0273 -0.0001 7 6 3.4556 5.4484 -0.0001 8 1 3.5757 5.7914 1.0275 9 6 2.4477 6.3448 -0.7224 10 6 4.7836 5.5126 -0.7096 11 8 5.2748 4.5037 -1.1695 12 7 5.4258 6.6912 -0.8322 13 6 5.1697 8.0833 -0.4332 14 6 6.6922 8.2958 -0.4061 15 8 7.3121 7.9660 0.8386 16 6 7.1425 9.6218 -0.9628 17 1 7.4267 9.7029 -2.0016 18 6 7.1916 10.7316 -0.1460 19 7 6.8450 10.6330 1.1188 20 14 7.7491 12.3754 -0.8363 21 1 6.8423 12.7820 -1.9399 22 1 7.7125 13.4011 0.2370 23 1 9.1349 12.2501 -1.3550 24 6 6.6879 7.1522 -1.4301 25 6 2.7234 3.3759 1.1971 26 6 2.2627 2.0726 1.1971 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.0927 1.5597 -2.1324 33 1 2.9047 3.8844 -2.1325 34 1 2.8101 7.3728 -0.7221 35 1 2.3275 6.0018 -1.7500 36 1 1.4871 6.2984 -0.2093 37 1 4.6633 8.6687 -1.2006 38 1 4.6996 8.1747 0.5461 39 1 7.3130 8.6885 1.4811 40 1 6.8799 11.4137 1.6935 41 1 7.5115 6.4502 -1.3004 42 1 6.5817 7.4914 -2.4606 43 1 2.9023 3.8854 2.1323 44 1 2.0823 1.5636 2.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332459809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:57 Heat of formation + Delta-G solvation = -53.780539 kcal Electronic energy + Delta-G solvation = -24584.460168 eV Core-core repulsion = 21080.745968 eV Total energy + Delta-G solvation = -3503.714200 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 8.11 seconds Orbital eigenvalues (eV) -41.59416 -40.44625 -39.01185 -36.00957 -35.90440 -34.12307 -33.59679 -31.83378 -30.49610 -29.29310 -27.29387 -26.80329 -25.69184 -23.86047 -23.65424 -22.00232 -21.21946 -19.92380 -19.16628 -17.95757 -17.54995 -17.06273 -16.85738 -16.35843 -16.16628 -15.97554 -15.66208 -15.09245 -14.73705 -14.65953 -14.52324 -14.34288 -14.13775 -13.98138 -13.84527 -13.42487 -13.32689 -13.30278 -12.96051 -12.77173 -12.73209 -12.54193 -12.31294 -12.21901 -12.17236 -12.03023 -11.65500 -11.63497 -11.33910 -10.87499 -10.62235 -10.20533 -9.78317 -9.57575 -9.42735 -8.27056 -6.44001 0.38784 0.52999 1.48837 1.50941 1.58055 1.62700 1.97675 2.41096 2.84738 2.95244 3.47571 3.58529 3.75461 3.90747 3.95292 4.09372 4.13321 4.15803 4.21959 4.38811 4.46734 4.53033 4.57187 4.61857 4.65249 4.73343 4.74577 4.78513 4.84618 4.91155 4.97096 5.06221 5.09977 5.11642 5.18169 5.23199 5.24822 5.40588 5.52169 5.71196 5.72892 5.73064 5.91429 6.12690 6.61467 6.88445 7.14972 7.29936 7.49277 8.78891 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.039277 B = 0.002829 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.711925 B = 9893.599874 C = 9949.089937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.088 4.088 4 C -0.129 4.129 5 C -0.098 4.098 6 C -0.084 4.084 7 C -0.059 4.059 8 H 0.105 0.895 9 C -0.133 4.133 10 C 0.534 3.466 11 O -0.589 6.589 12 N -0.635 5.635 13 C 0.090 3.910 14 C 0.218 3.782 15 O -0.587 6.587 16 C -0.552 4.552 17 H 0.074 0.926 18 C 0.033 3.967 19 N -0.917 5.917 20 Si 0.970 3.030 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.276 1.276 24 C 0.105 3.895 25 C -0.121 4.121 26 C -0.124 4.124 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.389 0.611 40 H 0.277 0.723 41 H 0.048 0.952 42 H 0.102 0.898 43 H 0.132 0.868 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 -11.741 -0.545 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.147 4.147 5 C -0.116 4.116 6 C -0.084 4.084 7 C -0.080 4.080 8 H 0.123 0.877 9 C -0.190 4.190 10 C 0.325 3.675 11 O -0.471 6.471 12 N -0.368 5.368 13 C -0.033 4.033 14 C 0.177 3.823 15 O -0.400 6.400 16 C -0.590 4.590 17 H 0.092 0.908 18 C -0.168 4.168 19 N -0.557 5.557 20 Si 0.795 3.205 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.201 1.201 24 C -0.018 4.018 25 C -0.139 4.139 26 C -0.142 4.142 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.151 0.849 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.245 0.755 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.120 0.880 43 H 0.150 0.850 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.528 -12.928 -0.874 18.733 hybrid contribution 0.666 1.573 0.012 1.708 sum -12.862 -11.355 -0.861 17.179 Atomic orbital electron populations 1.21721 0.93816 1.02475 1.01960 1.20583 0.96833 0.90999 1.03552 1.20213 0.98464 0.97371 0.92745 1.21184 1.00523 0.94302 0.98711 1.20924 0.97957 0.95531 0.97186 1.19419 1.00242 0.94400 0.94365 1.20186 0.91348 0.95074 1.01375 0.87686 1.21768 0.98416 0.98460 1.00342 1.20662 0.86468 0.80870 0.79521 1.90622 1.69186 1.34915 1.52347 1.49747 1.23139 1.07503 1.56364 1.24026 1.01640 0.78018 0.99607 1.19872 0.88687 0.91157 0.82575 1.86033 1.81382 1.45183 1.27388 1.21618 1.46727 0.93028 0.97640 0.90793 1.25764 0.93352 1.02641 0.95034 1.69313 1.47986 1.32458 1.05990 0.85419 0.78851 0.78111 0.78129 1.19093 1.20792 1.20101 1.23332 0.85322 0.94519 0.98592 1.21240 0.99700 0.95674 0.97244 1.21225 1.00096 0.94292 0.98601 0.90937 0.93030 0.92677 0.90086 0.90595 0.84851 0.87621 0.91555 0.92279 0.89293 0.88644 0.91773 0.75474 0.91316 0.93316 0.87969 0.84997 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.89 71.98 0.71 -1.18 16 2 C -0.08 -1.31 6.07 29.85 0.18 -1.13 16 3 C -0.09 -1.98 5.13 -19.86 -0.10 -2.08 16 4 C -0.13 -3.30 9.70 22.27 0.22 -3.09 16 5 C -0.10 -2.96 7.93 22.27 0.18 -2.79 16 6 C -0.08 -2.57 4.40 -19.87 -0.09 -2.66 16 7 C -0.06 -1.88 2.78 -12.29 -0.03 -1.91 16 8 H 0.11 3.21 7.88 -2.38 -0.02 3.19 16 9 C -0.13 -3.49 8.89 71.98 0.64 -2.85 16 10 C 0.53 21.93 7.27 87.66 0.64 22.56 16 11 O -0.59 -27.92 15.89 -3.02 -0.05 -27.97 16 12 N -0.63 -26.73 3.64 -858.27 -3.12 -29.85 16 13 C 0.09 3.72 6.15 83.26 0.51 4.23 16 14 C 0.22 10.43 1.58 -11.11 -0.02 10.41 16 15 O -0.59 -30.76 13.55 -148.98 -2.02 -32.78 16 16 C -0.55 -27.09 8.70 25.60 0.22 -26.86 16 17 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 18 C 0.03 1.57 5.39 84.66 0.46 2.03 16 19 N -0.92 -45.49 11.01 21.45 0.24 -45.25 16 20 Si 0.97 38.61 29.54 68.60 2.03 40.64 16 21 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 22 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 24 C 0.11 4.65 8.02 83.18 0.67 5.31 16 25 C -0.12 -3.23 9.67 22.27 0.22 -3.01 16 26 C -0.12 -2.86 9.70 22.27 0.22 -2.64 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 31 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 32 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.11 3.34 7.52 -2.91 -0.02 3.32 16 34 H 0.07 1.79 6.33 -2.39 -0.02 1.77 16 35 H 0.06 1.54 7.39 -2.39 -0.02 1.53 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 3.65 8.06 -2.39 -0.02 3.63 16 38 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 39 H 0.39 20.56 6.32 -74.06 -0.47 20.09 16 40 H 0.28 13.03 8.31 -92.71 -0.77 12.26 16 41 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.10 4.07 8.10 -2.39 -0.02 4.05 16 43 H 0.13 3.09 7.95 -2.91 -0.02 3.06 16 44 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -60.49 363.03 2.21 -58.28 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: 0.52 Total: 42.58 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 4.61 Total: -5.65 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -2.88 Total: -75.10 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -2.07 Total: -60.75 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -60.49 2.21 -58.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332459809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.503 kcal (2) G-P(sol) polarization free energy of solvation -60.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.11 seconds