Wall clock time and date at job start Tue Mar 31 2020 10:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47298 * 2 1 4 4 C 1.53000 * 109.46921 * 239.99794 * 2 1 3 5 5 C 1.50702 * 109.46878 * 119.99845 * 2 1 3 6 6 C 1.37976 * 120.07428 * 3.44038 * 5 2 1 7 7 C 1.38340 * 120.14239 * 179.97438 * 6 5 2 8 8 C 1.38378 * 120.29457 * 0.02562 * 7 6 5 9 9 C 1.37936 * 120.14261 * 359.74677 * 8 7 6 10 10 C 1.39563 * 120.07146 * 183.42121 * 5 2 1 11 11 C 1.47843 * 120.14377 * 0.02562 * 10 5 2 12 12 O 1.21552 * 120.00146 * 353.17943 * 11 10 5 13 13 N 1.34778 * 119.99944 * 173.18297 * 11 10 5 14 14 C 1.47578 * 134.49353 * 173.31601 * 13 11 10 15 15 C 1.53948 * 86.11806 * 155.35491 * 14 13 11 16 16 O 1.42899 * 113.73896 * 269.15624 * 15 14 13 17 17 C 1.50695 * 113.74226 * 137.95245 * 15 14 13 18 18 H 1.08002 * 120.00129 * 252.20466 * 17 15 14 19 19 C 1.37877 * 119.99903 * 72.48349 * 17 15 14 20 20 N 1.31520 * 119.99992 * 188.51131 * 19 17 15 21 21 Si 1.86800 * 120.00309 * 8.50600 * 19 17 15 22 22 H 1.48502 * 109.46875 * 94.88330 * 21 19 17 23 23 H 1.48494 * 109.47294 * 214.88471 * 21 19 17 24 24 H 1.48504 * 109.47045 * 334.89050 * 21 19 17 25 25 C 1.47811 * 134.45676 * 353.17329 * 13 11 10 26 26 H 1.08999 * 109.47238 * 300.00335 * 1 2 3 27 27 H 1.09001 * 109.46736 * 59.99982 * 1 2 3 28 28 H 1.08995 * 109.47296 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47488 * 149.05096 * 3 2 1 30 30 H 1.09001 * 109.46980 * 269.05072 * 3 2 1 31 31 H 1.08998 * 109.47238 * 29.04705 * 3 2 1 32 32 H 1.08999 * 109.47071 * 335.12487 * 4 2 1 33 33 H 1.08997 * 109.47121 * 95.13041 * 4 2 1 34 34 H 1.09004 * 109.46635 * 215.12483 * 4 2 1 35 35 H 1.08000 * 119.93077 * 359.97438 * 6 5 2 36 36 H 1.08004 * 119.85081 * 180.02562 * 7 6 5 37 37 H 1.07996 * 119.92918 * 179.97438 * 8 7 6 38 38 H 1.08003 * 120.07099 * 180.27784 * 9 8 7 39 39 H 1.09003 * 113.76911 * 41.05163 * 14 13 11 40 40 H 1.08999 * 113.87089 * 269.66775 * 14 13 11 41 41 H 0.96697 * 114.00004 * 175.46619 * 16 15 14 42 42 H 0.96997 * 120.00015 * 179.97438 * 20 19 17 43 43 H 1.09006 * 113.76354 * 90.38393 * 25 13 11 44 44 H 1.09007 * 113.83601 * 318.92913 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1390 -1.2970 2.1033 7 6 1.5986 -1.9499 3.2330 8 6 2.9554 -2.0190 3.4959 9 6 3.8592 -1.4408 2.6291 10 6 3.4020 -0.7767 1.4896 11 6 4.3648 -0.1503 0.5588 12 8 3.9767 0.3150 -0.4949 13 7 5.6730 -0.0953 0.8786 14 6 6.8950 0.3256 0.1663 15 6 7.4940 0.5817 1.5611 16 8 7.2903 1.9129 2.0390 17 6 8.9209 0.1184 1.7031 18 1 9.1484 -0.7561 2.2948 19 6 9.9366 0.8141 1.0824 20 7 11.1559 0.3213 1.0646 21 14 9.5811 2.4565 0.2666 22 1 9.8840 3.5569 1.2167 23 1 10.4278 2.6011 -0.9447 24 1 8.1487 2.5171 -0.1205 25 6 6.4587 -0.4300 2.0850 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.9920 1.4913 0.5285 30 1 2.1772 1.7793 -1.0275 31 1 1.3142 2.0845 0.4989 32 1 1.2820 -1.4223 -1.5988 33 1 2.2477 0.0091 -2.0311 34 1 2.9535 -1.2645 -1.0075 35 1 0.0787 -1.2463 1.9041 36 1 0.8952 -2.4078 3.9128 37 1 3.3076 -2.5298 4.3798 38 1 4.9182 -1.4993 2.8331 39 1 6.7670 1.2292 -0.4297 40 1 7.3855 -0.4791 -0.3815 41 1 7.6036 2.0588 2.9421 42 1 11.8704 0.8106 0.6276 43 1 6.8195 -1.4584 2.1028 44 1 5.9829 -0.1285 3.0182 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334203742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:53 Heat of formation + Delta-G solvation = 10.557957 kcal Electronic energy + Delta-G solvation = -25989.342838 eV Core-core repulsion = 22488.418565 eV Total energy + Delta-G solvation = -3500.924274 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 4.32 seconds Orbital eigenvalues (eV) -40.81372 -39.10478 -37.48239 -36.03554 -34.21729 -32.52598 -31.44950 -30.07384 -28.74314 -27.16628 -26.95732 -25.86459 -25.46294 -23.01911 -22.69551 -20.11836 -19.46561 -18.57991 -17.83106 -16.99496 -16.21764 -15.57205 -15.23551 -15.03644 -14.96807 -14.47739 -14.23946 -14.06511 -13.82967 -13.62170 -13.38015 -13.03615 -12.84720 -12.40926 -12.24233 -12.10494 -12.05552 -11.87261 -11.60874 -11.45600 -11.20395 -10.91973 -10.85853 -10.64580 -10.58253 -10.50839 -10.31857 -10.01196 -9.37673 -9.05383 -8.90802 -8.80574 -8.71033 -8.60613 -7.88862 -6.33030 -4.47243 0.98068 1.38976 3.15784 3.31474 3.33645 3.41995 3.58441 3.98488 4.34694 4.63023 4.67328 4.78910 4.91385 4.97337 5.08400 5.11772 5.19358 5.30344 5.42211 5.46495 5.56215 5.71192 5.80031 5.83127 5.88280 5.95054 5.98890 6.05458 6.07763 6.13638 6.24561 6.25338 6.33715 6.40115 6.42169 6.46456 6.53536 6.58215 6.71060 6.78192 6.83633 6.93954 7.27976 8.03014 8.27349 8.60275 8.64446 8.74487 9.28515 10.76073 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022124 B = 0.004573 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.300164 B = 6121.398448 C = 6884.411533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.022 4.022 3 C -0.121 4.121 4 C -0.111 4.111 5 C -0.015 4.015 6 C -0.138 4.138 7 C -0.099 4.099 8 C -0.138 4.138 9 C -0.094 4.094 10 C -0.123 4.123 11 C 0.560 3.440 12 O -0.528 6.528 13 N -0.628 5.628 14 C 0.117 3.883 15 C 0.201 3.799 16 O -0.561 6.561 17 C -0.556 4.556 18 H 0.084 0.916 19 C 0.089 3.911 20 N -0.880 5.880 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.302 1.302 24 H -0.246 1.246 25 C 0.073 3.927 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.141 0.859 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.371 0.629 42 H 0.269 0.731 43 H 0.091 0.909 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.871 -3.441 3.192 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 C -0.178 4.178 4 C -0.168 4.168 5 C -0.016 4.016 6 C -0.156 4.156 7 C -0.117 4.117 8 C -0.156 4.156 9 C -0.112 4.112 10 C -0.126 4.126 11 C 0.351 3.649 12 O -0.408 6.408 13 N -0.362 5.362 14 C -0.004 4.004 15 C 0.160 3.840 16 O -0.367 6.367 17 C -0.593 4.593 18 H 0.102 0.898 19 C -0.118 4.118 20 N -0.515 5.515 21 Si 0.722 3.278 22 H -0.207 1.207 23 H -0.231 1.231 24 H -0.170 1.170 25 C -0.049 4.049 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.158 0.842 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.219 0.781 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.342 -3.107 1.920 18.702 hybrid contribution 0.301 0.569 0.343 0.729 sum -18.041 -2.538 2.263 18.359 Atomic orbital electron populations 1.22070 0.94937 1.01320 1.01665 1.19451 0.94100 0.96121 0.92510 1.22110 1.00613 0.92650 1.02388 1.21917 0.99682 0.99497 0.95655 1.20089 0.91540 0.94662 0.95290 1.21130 0.99844 0.99638 0.94951 1.21299 0.95725 0.97833 0.96829 1.21096 0.93245 1.01204 1.00027 1.21950 1.01250 0.95140 0.92876 1.19859 0.93406 1.02501 0.96866 1.17792 0.80869 0.79973 0.86245 1.90842 1.76741 1.47393 1.25826 1.50068 1.04395 1.63433 1.18314 1.23800 0.79870 0.99396 0.97378 1.20506 0.93166 0.79876 0.90423 1.86363 1.84987 1.31034 1.34327 1.21115 0.88200 1.14902 1.35078 0.89837 1.24983 0.94633 0.97922 0.94258 1.69945 1.01257 1.38247 1.42073 0.86634 0.79502 0.83319 0.78369 1.20696 1.23051 1.17036 1.24180 0.90845 1.01378 0.88545 0.92702 0.92362 0.92666 0.91118 0.92297 0.95160 0.95092 0.92105 0.91882 0.85283 0.86005 0.85721 0.84204 0.90658 0.88609 0.78148 0.92161 0.89096 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 6.75 37.16 0.25 -1.30 16 2 C -0.02 -0.31 0.75 -155.66 -0.12 -0.42 16 3 C -0.12 -1.88 7.52 37.16 0.28 -1.60 16 4 C -0.11 -1.65 7.60 37.16 0.28 -1.36 16 5 C -0.01 -0.21 4.72 -104.22 -0.49 -0.71 16 6 C -0.14 -1.64 8.98 -39.64 -0.36 -2.00 16 7 C -0.10 -1.06 10.04 -39.49 -0.40 -1.46 16 8 C -0.14 -1.60 10.03 -39.64 -0.40 -2.00 16 9 C -0.09 -1.32 9.08 -39.19 -0.36 -1.68 16 10 C -0.12 -1.98 5.31 -104.97 -0.56 -2.54 16 11 C 0.56 10.50 6.22 -12.33 -0.08 10.43 16 12 O -0.53 -10.53 9.52 5.32 0.05 -10.48 16 13 N -0.63 -12.10 3.59 -179.22 -0.64 -12.74 16 14 C 0.12 2.48 7.10 -2.97 -0.02 2.46 16 15 C 0.20 4.25 0.92 -90.85 -0.08 4.17 16 16 O -0.56 -11.72 10.63 -35.23 -0.37 -12.09 16 17 C -0.56 -13.73 9.13 -34.44 -0.31 -14.05 16 18 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 19 C 0.09 2.33 5.47 -17.82 -0.10 2.24 16 20 N -0.88 -24.81 13.96 55.43 0.77 -24.04 16 21 Si 0.89 21.23 25.94 -169.99 -4.41 16.82 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.25 -5.84 4.74 56.52 0.27 -5.57 16 25 C 0.07 1.30 5.58 -2.84 -0.02 1.28 16 26 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.54 7.33 -51.93 -0.38 0.16 16 29 H 0.07 1.30 4.76 -51.93 -0.25 1.05 16 30 H 0.06 0.94 7.18 -51.93 -0.37 0.57 16 31 H 0.03 0.42 7.80 -51.93 -0.41 0.01 16 32 H 0.03 0.40 7.75 -51.93 -0.40 -0.01 16 33 H 0.06 0.94 7.00 -51.93 -0.36 0.58 16 34 H 0.06 1.07 5.54 -51.93 -0.29 0.79 16 35 H 0.13 1.25 5.90 -52.49 -0.31 0.94 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.14 1.91 4.15 -52.48 -0.22 1.70 16 39 H 0.08 1.69 6.74 -51.93 -0.35 1.34 16 40 H 0.10 1.99 8.09 -51.93 -0.42 1.57 16 41 H 0.37 6.49 9.07 45.56 0.41 6.91 16 42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.09 1.52 7.96 -51.93 -0.41 1.11 16 44 H 0.07 1.17 7.00 -51.92 -0.36 0.80 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -29.61 332.34 -7.54 -37.15 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.48 Total: 8.93 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.47 Total: -8.55 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.13 Total: -36.78 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.32 Total: -22.58 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.41 Total: 16.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.61 -7.54 -37.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334203742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.707 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.32 seconds