Wall clock time and date at job start Tue Mar 31 2020 10:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47298 * 2 1 4 4 C 1.53000 * 109.46921 * 239.99794 * 2 1 3 5 5 C 1.50702 * 109.46878 * 119.99845 * 2 1 3 6 6 C 1.37976 * 120.07428 * 3.44038 * 5 2 1 7 7 C 1.38340 * 120.14239 * 179.97438 * 6 5 2 8 8 C 1.38378 * 120.29457 * 0.02562 * 7 6 5 9 9 C 1.37936 * 120.14261 * 359.74677 * 8 7 6 10 10 C 1.39563 * 120.07146 * 183.42121 * 5 2 1 11 11 C 1.47843 * 120.14377 * 0.02562 * 10 5 2 12 12 O 1.21552 * 120.00146 * 353.17943 * 11 10 5 13 13 N 1.34778 * 119.99944 * 173.18297 * 11 10 5 14 14 C 1.47578 * 134.49353 * 173.31601 * 13 11 10 15 15 C 1.53948 * 86.11806 * 155.35491 * 14 13 11 16 16 O 1.42899 * 113.73896 * 269.15624 * 15 14 13 17 17 C 1.50695 * 113.74226 * 137.95245 * 15 14 13 18 18 H 1.08002 * 120.00129 * 252.20466 * 17 15 14 19 19 C 1.37877 * 119.99903 * 72.48349 * 17 15 14 20 20 N 1.31520 * 119.99992 * 188.51131 * 19 17 15 21 21 Si 1.86800 * 120.00309 * 8.50600 * 19 17 15 22 22 H 1.48502 * 109.46875 * 94.88330 * 21 19 17 23 23 H 1.48494 * 109.47294 * 214.88471 * 21 19 17 24 24 H 1.48504 * 109.47045 * 334.89050 * 21 19 17 25 25 C 1.47811 * 134.45676 * 353.17329 * 13 11 10 26 26 H 1.08999 * 109.47238 * 300.00335 * 1 2 3 27 27 H 1.09001 * 109.46736 * 59.99982 * 1 2 3 28 28 H 1.08995 * 109.47296 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47488 * 149.05096 * 3 2 1 30 30 H 1.09001 * 109.46980 * 269.05072 * 3 2 1 31 31 H 1.08998 * 109.47238 * 29.04705 * 3 2 1 32 32 H 1.08999 * 109.47071 * 335.12487 * 4 2 1 33 33 H 1.08997 * 109.47121 * 95.13041 * 4 2 1 34 34 H 1.09004 * 109.46635 * 215.12483 * 4 2 1 35 35 H 1.08000 * 119.93077 * 359.97438 * 6 5 2 36 36 H 1.08004 * 119.85081 * 180.02562 * 7 6 5 37 37 H 1.07996 * 119.92918 * 179.97438 * 8 7 6 38 38 H 1.08003 * 120.07099 * 180.27784 * 9 8 7 39 39 H 1.09003 * 113.76911 * 41.05163 * 14 13 11 40 40 H 1.08999 * 113.87089 * 269.66775 * 14 13 11 41 41 H 0.96697 * 114.00004 * 175.46619 * 16 15 14 42 42 H 0.96997 * 120.00015 * 179.97438 * 20 19 17 43 43 H 1.09006 * 113.76354 * 90.38393 * 25 13 11 44 44 H 1.09007 * 113.83601 * 318.92913 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1390 -1.2970 2.1033 7 6 1.5986 -1.9499 3.2330 8 6 2.9554 -2.0190 3.4959 9 6 3.8592 -1.4408 2.6291 10 6 3.4020 -0.7767 1.4896 11 6 4.3648 -0.1503 0.5588 12 8 3.9767 0.3150 -0.4949 13 7 5.6730 -0.0953 0.8786 14 6 6.8950 0.3256 0.1663 15 6 7.4940 0.5817 1.5611 16 8 7.2903 1.9129 2.0390 17 6 8.9209 0.1184 1.7031 18 1 9.1484 -0.7561 2.2948 19 6 9.9366 0.8141 1.0824 20 7 11.1559 0.3213 1.0646 21 14 9.5811 2.4565 0.2666 22 1 9.8840 3.5569 1.2167 23 1 10.4278 2.6011 -0.9447 24 1 8.1487 2.5171 -0.1205 25 6 6.4587 -0.4300 2.0850 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.9920 1.4913 0.5285 30 1 2.1772 1.7793 -1.0275 31 1 1.3142 2.0845 0.4989 32 1 1.2820 -1.4223 -1.5988 33 1 2.2477 0.0091 -2.0311 34 1 2.9535 -1.2645 -1.0075 35 1 0.0787 -1.2463 1.9041 36 1 0.8952 -2.4078 3.9128 37 1 3.3076 -2.5298 4.3798 38 1 4.9182 -1.4993 2.8331 39 1 6.7670 1.2292 -0.4297 40 1 7.3855 -0.4791 -0.3815 41 1 7.6036 2.0588 2.9421 42 1 11.8704 0.8106 0.6276 43 1 6.8195 -1.4584 2.1028 44 1 5.9829 -0.1285 3.0182 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334203742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:52 Heat of formation + Delta-G solvation = -9.031047 kcal Electronic energy + Delta-G solvation = -25990.192281 eV Core-core repulsion = 22488.418565 eV Total energy + Delta-G solvation = -3501.773717 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06334 -40.52809 -38.77046 -37.18941 -35.80852 -34.53835 -32.55654 -31.08887 -30.27155 -28.18641 -28.15819 -27.42561 -27.17738 -24.20730 -23.70948 -21.66821 -20.76972 -19.85269 -19.54215 -18.33778 -17.57454 -17.09190 -16.69020 -16.49697 -16.24357 -15.80428 -15.38959 -15.26473 -15.12989 -15.00317 -14.73325 -14.63848 -14.29765 -13.86875 -13.78246 -13.26442 -13.19337 -12.99621 -12.85038 -12.74297 -12.56975 -12.54333 -12.39822 -12.08562 -11.83968 -11.74090 -11.61475 -11.40014 -11.05469 -10.90977 -10.64480 -10.21834 -9.89849 -9.70055 -9.39860 -8.39744 -6.53438 -0.06288 0.44261 1.38197 1.44179 1.63654 1.88126 1.95842 2.35651 2.89637 2.94261 3.28520 3.56747 3.65519 3.74608 3.91633 4.09603 4.19754 4.24067 4.36370 4.42128 4.43500 4.51975 4.55971 4.64516 4.67494 4.76685 4.78786 4.80415 4.88761 4.93735 5.00029 5.09890 5.15212 5.17568 5.19066 5.27249 5.41342 5.43110 5.48415 5.48439 5.56606 5.74758 6.01604 6.03323 6.58882 6.82286 7.10547 7.19264 7.27195 8.73005 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022124 B = 0.004573 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.300164 B = 6121.398448 C = 6884.411533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.024 4.024 3 C -0.115 4.115 4 C -0.104 4.104 5 C -0.029 4.029 6 C -0.136 4.136 7 C -0.086 4.086 8 C -0.135 4.135 9 C -0.106 4.106 10 C -0.151 4.151 11 C 0.553 3.447 12 O -0.549 6.549 13 N -0.634 5.634 14 C 0.112 3.888 15 C 0.197 3.803 16 O -0.568 6.568 17 C -0.543 4.543 18 H 0.063 0.937 19 C 0.048 3.952 20 N -0.924 5.924 21 Si 0.944 3.056 22 H -0.277 1.277 23 H -0.310 1.310 24 H -0.248 1.248 25 C 0.092 3.908 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.386 0.614 42 H 0.269 0.731 43 H 0.101 0.899 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.306 -4.290 5.135 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 C -0.172 4.172 4 C -0.161 4.161 5 C -0.030 4.030 6 C -0.153 4.153 7 C -0.104 4.104 8 C -0.153 4.153 9 C -0.124 4.124 10 C -0.154 4.154 11 C 0.346 3.654 12 O -0.431 6.431 13 N -0.368 5.368 14 C -0.011 4.011 15 C 0.156 3.844 16 O -0.376 6.376 17 C -0.580 4.580 18 H 0.081 0.919 19 C -0.154 4.154 20 N -0.562 5.562 21 Si 0.773 3.227 22 H -0.203 1.203 23 H -0.238 1.238 24 H -0.173 1.173 25 C -0.030 4.030 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.174 0.826 36 H 0.179 0.821 37 H 0.171 0.829 38 H 0.155 0.845 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.236 0.764 42 H 0.078 0.922 43 H 0.118 0.882 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.796 -3.955 3.888 22.490 hybrid contribution 1.298 0.779 -0.218 1.529 sum -20.498 -3.176 3.669 21.065 Atomic orbital electron populations 1.22027 0.92045 1.02741 1.02587 1.19465 0.96353 0.94535 0.92053 1.22007 0.99525 0.94630 1.01026 1.21817 0.99095 0.99237 0.95995 1.20222 0.91290 0.95501 0.95996 1.21467 1.00736 0.98609 0.94500 1.21779 0.96022 0.96082 0.96505 1.21463 0.93423 1.00222 1.00154 1.22019 1.01803 0.95667 0.92915 1.19757 0.93549 1.04512 0.97573 1.18398 0.80822 0.79505 0.86650 1.90825 1.77020 1.48240 1.26985 1.50032 1.04359 1.64075 1.18357 1.23633 0.81576 0.98635 0.97247 1.20401 0.91988 0.80909 0.91107 1.86320 1.84971 1.30646 1.35692 1.21323 0.89959 1.13591 1.33171 0.91873 1.25548 0.94555 1.00215 0.95106 1.70033 1.02224 1.39689 1.44217 0.85831 0.78816 0.80736 0.77365 1.20308 1.23825 1.17252 1.24066 0.89186 1.00748 0.89039 0.91386 0.91931 0.90926 0.94269 0.93822 0.93555 0.93001 0.93843 0.94646 0.82593 0.82120 0.82851 0.84473 0.92581 0.88995 0.76422 0.92165 0.88157 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 6.75 71.98 0.49 -2.05 16 2 C -0.02 -0.64 0.75 -52.93 -0.04 -0.68 16 3 C -0.11 -3.59 7.52 71.98 0.54 -3.05 16 4 C -0.10 -3.11 7.60 71.98 0.55 -2.56 16 5 C -0.03 -0.78 4.72 -19.61 -0.09 -0.87 16 6 C -0.14 -2.64 8.98 22.23 0.20 -2.44 16 7 C -0.09 -1.41 10.04 22.33 0.22 -1.19 16 8 C -0.13 -2.58 10.03 22.23 0.22 -2.35 16 9 C -0.11 -2.75 9.08 22.52 0.20 -2.54 16 10 C -0.15 -4.71 5.31 -20.09 -0.11 -4.82 16 11 C 0.55 21.13 6.22 86.79 0.54 21.67 16 12 O -0.55 -22.85 9.52 -3.88 -0.04 -22.89 16 13 N -0.63 -24.70 3.59 -843.02 -3.03 -27.73 16 14 C 0.11 4.85 7.10 86.49 0.61 5.47 16 15 C 0.20 8.33 0.92 -10.88 -0.01 8.32 16 16 O -0.57 -23.39 10.63 -148.98 -1.58 -24.97 16 17 C -0.54 -27.13 9.13 25.60 0.23 -26.89 16 18 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 19 C 0.05 2.56 5.47 84.65 0.46 3.03 16 20 N -0.92 -53.29 13.96 21.45 0.30 -52.99 16 21 Si 0.94 44.75 25.94 68.60 1.78 46.53 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.31 -14.93 7.11 99.48 0.71 -14.23 16 24 H -0.25 -11.78 4.74 99.48 0.47 -11.31 16 25 C 0.09 3.17 5.58 86.44 0.48 3.66 16 26 H 0.07 1.09 7.65 -2.39 -0.02 1.07 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.10 7.33 -2.39 -0.02 1.08 16 29 H 0.04 1.46 4.76 -2.39 -0.01 1.45 16 30 H 0.04 1.44 7.18 -2.39 -0.02 1.42 16 31 H 0.05 1.24 7.80 -2.39 -0.02 1.22 16 32 H 0.05 1.27 7.75 -2.39 -0.02 1.25 16 33 H 0.04 1.39 7.00 -2.39 -0.02 1.38 16 34 H 0.03 1.23 5.54 -2.38 -0.01 1.22 16 35 H 0.16 2.17 5.90 -2.91 -0.02 2.15 16 36 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 38 H 0.14 3.50 4.15 -2.91 -0.01 3.49 16 39 H 0.06 2.62 6.74 -2.39 -0.02 2.60 16 40 H 0.09 3.97 8.09 -2.39 -0.02 3.95 16 41 H 0.39 13.05 9.07 -74.06 -0.67 12.38 16 42 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 43 H 0.10 3.28 7.96 -2.38 -0.02 3.26 16 44 H 0.10 2.94 7.00 -2.38 -0.02 2.92 16 Total: -1.00 -66.45 332.34 2.06 -64.39 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.12 Total: 24.98 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 4.51 Total: -7.32 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -2.73 Total: -80.72 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -1.62 Total: -47.86 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.78 Total: 46.53 kcal Total: -66.45 2.06 -64.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334203742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.363 kcal (2) G-P(sol) polarization free energy of solvation -66.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds