Wall clock time and date at job start Tue Mar 31 2020 09:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47121 * 2 1 4 4 C 1.38541 * 119.80621 * 269.98090 * 3 2 1 5 5 C 1.37789 * 120.30199 * 179.72100 * 4 3 2 6 6 C 1.39708 * 119.90341 * 0.57583 * 5 4 3 7 7 C 1.47533 * 120.18908 * 179.72489 * 6 5 4 8 8 O 1.21588 * 119.99928 * 132.30702 * 7 6 5 9 9 N 1.34777 * 120.00256 * 312.30321 * 7 6 5 10 10 C 1.46924 * 120.63264 * 174.97227 * 9 7 6 11 11 C 1.53195 * 108.77544 * 126.37029 * 10 9 7 12 12 C 1.53046 * 109.30871 * 54.63744 * 11 10 9 13 13 C 1.50702 * 109.44807 * 178.62076 * 12 11 10 14 14 H 1.08003 * 120.00004 * 120.05695 * 13 12 11 15 15 C 1.37880 * 119.99595 * 300.06376 * 13 12 11 16 16 N 1.31511 * 120.00586 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99603 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47000 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47183 * 119.99675 * 17 15 13 20 20 H 1.48503 * 109.47001 * 239.99953 * 17 15 13 21 21 C 1.53039 * 109.53692 * 298.63481 * 12 11 10 22 22 C 1.46923 * 120.62936 * 354.95472 * 9 7 6 23 23 C 1.40140 * 119.61833 * 359.44956 * 6 5 4 24 24 O 1.35652 * 120.14799 * 180.22896 * 23 6 5 25 25 C 1.38057 * 119.80366 * 90.00519 * 3 2 1 26 26 H 1.08999 * 109.47290 * 299.99713 * 1 2 3 27 27 H 1.09003 * 109.47790 * 59.99788 * 1 2 3 28 28 H 1.08995 * 109.47614 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46886 * 240.00578 * 2 1 3 30 30 H 1.08994 * 109.47623 * 120.00359 * 2 1 3 31 31 H 1.08001 * 119.85349 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.04941 * 180.30480 * 5 4 3 33 33 H 1.08997 * 109.59089 * 246.15834 * 10 9 7 34 34 H 1.09000 * 109.58777 * 6.58460 * 10 9 7 35 35 H 1.08995 * 109.49951 * 174.58552 * 11 10 9 36 36 H 1.08997 * 109.49912 * 294.68891 * 11 10 9 37 37 H 1.08995 * 109.45821 * 58.65808 * 12 11 10 38 38 H 0.97003 * 120.00092 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.49492 * 301.41202 * 21 12 11 40 40 H 1.08998 * 109.52114 * 181.33646 * 21 12 11 41 41 H 1.09004 * 109.58722 * 353.41748 * 22 9 7 42 42 H 1.09001 * 109.58930 * 113.69592 * 22 9 7 43 43 H 0.96702 * 113.99591 * 90.00637 * 24 23 6 44 44 H 1.08000 * 119.95853 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0700 -1.2021 5 6 2.7160 3.3709 -1.2141 6 6 2.9572 4.0355 -0.0091 7 6 3.4490 5.4265 -0.0145 8 8 2.9216 6.2605 0.6958 9 7 4.4829 5.7727 -0.8068 10 6 4.9133 7.1739 -0.9064 11 6 6.4127 7.2520 -0.6019 12 6 7.1675 6.2953 -1.5278 13 6 8.6462 6.3945 -1.2542 14 1 9.1955 5.5222 -0.9322 15 6 9.2976 7.5991 -1.4147 16 7 8.6288 8.6613 -1.8071 17 14 11.1307 7.7219 -1.0762 18 1 11.6455 6.3954 -0.6513 19 1 11.8340 8.1542 -2.3105 20 1 11.3694 8.7139 0.0028 21 6 6.6974 4.8610 -1.2750 22 6 5.2013 4.7559 -1.5870 23 6 2.7239 3.3753 1.2048 24 8 2.9500 4.0119 2.3811 25 6 2.2611 2.0677 1.1980 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.0803 1.5557 -2.1342 32 1 2.8892 3.8747 -2.1536 33 1 4.7255 7.5432 -1.9145 34 1 4.3621 7.7776 -0.1853 35 1 6.7647 8.2704 -0.7660 36 1 6.5885 6.9685 0.4357 37 1 6.9715 6.5642 -2.5657 38 1 9.0872 9.5086 -1.9204 39 1 6.8705 4.6001 -0.2309 40 1 7.2520 4.1773 -1.9177 41 1 4.8401 3.7640 -1.3151 42 1 5.0348 4.9264 -2.6507 43 1 2.1828 4.4915 2.7225 44 1 2.0795 1.5551 2.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335102806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:45 Heat of formation + Delta-G solvation = -67.826221 kcal Electronic energy + Delta-G solvation = -25007.842065 eV Core-core repulsion = 21503.518798 eV Total energy + Delta-G solvation = -3504.323267 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -40.56057 -38.87464 -37.20736 -36.57889 -34.22889 -33.37581 -31.14292 -30.66219 -30.02974 -29.23224 -26.28833 -24.71985 -23.09381 -22.86869 -22.16309 -21.44505 -20.10970 -18.70846 -17.80431 -17.14825 -16.39908 -16.25670 -15.59208 -15.48437 -14.68656 -14.54342 -14.43092 -14.11951 -13.91360 -13.77600 -13.31471 -13.09247 -12.82286 -12.72262 -12.53204 -12.34422 -11.98525 -11.84669 -11.65249 -11.52192 -11.23388 -11.14056 -10.94212 -10.67947 -10.59273 -10.39406 -10.07005 -9.56379 -9.55946 -9.23349 -8.92155 -8.84924 -8.67154 -8.36187 -7.98219 -6.00831 -4.07198 0.85138 1.14079 2.95373 3.28888 3.33991 3.37350 3.41047 3.66336 4.11733 4.42557 4.46659 4.60979 4.73241 4.89945 5.01464 5.08132 5.23366 5.26461 5.29029 5.47106 5.54633 5.58567 5.66283 5.77767 5.80842 5.88369 5.93950 6.02858 6.10816 6.20804 6.28662 6.34093 6.43179 6.47061 6.61136 6.65312 6.86364 6.98849 7.22025 7.35587 7.64499 7.71180 7.89257 7.95176 8.07810 8.41798 8.53665 8.96276 9.57871 11.04668 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.003348 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.671840 B = 8361.265141 C = 8705.321414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.052 4.052 4 C -0.135 4.135 5 C -0.068 4.068 6 C -0.152 4.152 7 C 0.561 3.439 8 O -0.550 6.550 9 N -0.592 5.592 10 C 0.109 3.891 11 C -0.123 4.123 12 C 0.049 3.951 13 C -0.512 4.512 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.124 4.124 22 C 0.101 3.899 23 C 0.159 3.841 24 O -0.489 6.489 25 C -0.152 4.152 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.398 0.602 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.896 -15.049 1.232 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.087 4.087 6 C -0.155 4.155 7 C 0.349 3.651 8 O -0.429 6.429 9 N -0.323 5.323 10 C -0.012 4.012 11 C -0.161 4.161 12 C 0.030 3.970 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.162 4.162 22 C -0.021 4.021 23 C 0.113 3.887 24 O -0.300 6.300 25 C -0.170 4.170 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.255 0.745 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.558 -14.622 1.500 21.404 hybrid contribution 0.715 0.377 0.211 0.835 sum -14.843 -14.246 1.711 20.644 Atomic orbital electron populations 1.21750 0.94493 1.01810 1.02388 1.20596 0.96308 0.92268 1.03257 1.19883 0.96708 0.96104 0.92555 1.20943 1.01797 0.94742 0.97797 1.21261 0.96170 0.94315 0.96961 1.20436 1.05636 0.95439 0.94021 1.18045 0.80298 0.87044 0.79746 1.90712 1.58959 1.51762 1.41473 1.48148 1.30450 1.09849 1.43851 1.21920 0.98509 0.79762 1.00998 1.22013 0.89783 1.05210 0.99121 1.18643 0.94571 0.88318 0.95428 1.21229 0.93188 0.95331 1.45243 0.92668 1.24968 0.98095 0.95885 0.95062 1.69851 1.35494 1.00390 1.47238 0.86562 0.85669 0.78066 0.77856 1.19838 1.21062 1.21052 1.22010 0.91938 1.01344 1.00913 1.22047 0.94437 0.90731 0.94901 1.18383 0.94916 0.90778 0.84617 1.84705 1.41102 1.69252 1.34914 1.21215 1.02524 0.94704 0.98591 0.92495 0.92392 0.92284 0.90596 0.90773 0.85314 0.84868 0.92157 0.90530 0.87790 0.94269 0.95469 0.93019 0.92856 0.92051 0.90747 0.91846 0.74469 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 2 C -0.09 -0.61 6.05 -27.88 -0.17 -0.78 16 3 C -0.05 -0.51 5.14 -104.57 -0.54 -1.05 16 4 C -0.13 -1.35 9.67 -39.63 -0.38 -1.73 16 5 C -0.07 -0.84 7.50 -39.20 -0.29 -1.13 16 6 C -0.15 -2.31 4.88 -104.84 -0.51 -2.82 16 7 C 0.56 10.52 6.98 -12.47 -0.09 10.43 16 8 O -0.55 -11.69 15.88 -5.52 -0.09 -11.78 16 9 N -0.59 -11.17 2.97 -174.00 -0.52 -11.69 16 10 C 0.11 2.25 6.44 -3.71 -0.02 2.22 16 11 C -0.12 -2.92 5.15 -26.61 -0.14 -3.06 16 12 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 13 C -0.51 -13.85 8.56 -34.44 -0.29 -14.15 16 14 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -25.01 11.31 55.43 0.63 -24.38 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 22 C 0.10 1.72 5.21 -3.71 -0.02 1.70 16 23 C 0.16 2.25 6.69 -38.70 -0.26 1.99 16 24 O -0.49 -7.16 12.50 -29.46 -0.37 -7.53 16 25 C -0.15 -1.70 9.62 -39.48 -0.38 -2.08 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.49 7.25 -52.49 -0.38 1.11 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.61 6.99 -51.93 -0.36 1.24 16 35 H 0.10 2.73 6.03 -51.93 -0.31 2.41 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.12 5.06 -51.93 -0.26 0.85 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.40 4.32 9.06 45.56 0.41 4.74 16 44 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -31.65 353.96 -9.12 -40.78 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.94 Total: 4.15 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -3.15 Total: -11.07 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.11 Total: -36.07 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.46 Total: -19.30 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.65 -9.12 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335102806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.048 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds