Wall clock time and date at job start Tue Mar 31 2020 09:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47121 * 2 1 4 4 C 1.38541 * 119.80621 * 269.98090 * 3 2 1 5 5 C 1.37789 * 120.30199 * 179.72100 * 4 3 2 6 6 C 1.39708 * 119.90341 * 0.57583 * 5 4 3 7 7 C 1.47533 * 120.18908 * 179.72489 * 6 5 4 8 8 O 1.21588 * 119.99928 * 132.30702 * 7 6 5 9 9 N 1.34777 * 120.00256 * 312.30321 * 7 6 5 10 10 C 1.46924 * 120.63264 * 174.97227 * 9 7 6 11 11 C 1.53195 * 108.77544 * 126.37029 * 10 9 7 12 12 C 1.53046 * 109.30871 * 54.63744 * 11 10 9 13 13 C 1.50702 * 109.44807 * 178.62076 * 12 11 10 14 14 H 1.08003 * 120.00004 * 120.05695 * 13 12 11 15 15 C 1.37880 * 119.99595 * 300.06376 * 13 12 11 16 16 N 1.31511 * 120.00586 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99603 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47000 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47183 * 119.99675 * 17 15 13 20 20 H 1.48503 * 109.47001 * 239.99953 * 17 15 13 21 21 C 1.53039 * 109.53692 * 298.63481 * 12 11 10 22 22 C 1.46923 * 120.62936 * 354.95472 * 9 7 6 23 23 C 1.40140 * 119.61833 * 359.44956 * 6 5 4 24 24 O 1.35652 * 120.14799 * 180.22896 * 23 6 5 25 25 C 1.38057 * 119.80366 * 90.00519 * 3 2 1 26 26 H 1.08999 * 109.47290 * 299.99713 * 1 2 3 27 27 H 1.09003 * 109.47790 * 59.99788 * 1 2 3 28 28 H 1.08995 * 109.47614 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46886 * 240.00578 * 2 1 3 30 30 H 1.08994 * 109.47623 * 120.00359 * 2 1 3 31 31 H 1.08001 * 119.85349 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.04941 * 180.30480 * 5 4 3 33 33 H 1.08997 * 109.59089 * 246.15834 * 10 9 7 34 34 H 1.09000 * 109.58777 * 6.58460 * 10 9 7 35 35 H 1.08995 * 109.49951 * 174.58552 * 11 10 9 36 36 H 1.08997 * 109.49912 * 294.68891 * 11 10 9 37 37 H 1.08995 * 109.45821 * 58.65808 * 12 11 10 38 38 H 0.97003 * 120.00092 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.49492 * 301.41202 * 21 12 11 40 40 H 1.08998 * 109.52114 * 181.33646 * 21 12 11 41 41 H 1.09004 * 109.58722 * 353.41748 * 22 9 7 42 42 H 1.09001 * 109.58930 * 113.69592 * 22 9 7 43 43 H 0.96702 * 113.99591 * 90.00637 * 24 23 6 44 44 H 1.08000 * 119.95853 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0700 -1.2021 5 6 2.7160 3.3709 -1.2141 6 6 2.9572 4.0355 -0.0091 7 6 3.4490 5.4265 -0.0145 8 8 2.9216 6.2605 0.6958 9 7 4.4829 5.7727 -0.8068 10 6 4.9133 7.1739 -0.9064 11 6 6.4127 7.2520 -0.6019 12 6 7.1675 6.2953 -1.5278 13 6 8.6462 6.3945 -1.2542 14 1 9.1955 5.5222 -0.9322 15 6 9.2976 7.5991 -1.4147 16 7 8.6288 8.6613 -1.8071 17 14 11.1307 7.7219 -1.0762 18 1 11.6455 6.3954 -0.6513 19 1 11.8340 8.1542 -2.3105 20 1 11.3694 8.7139 0.0028 21 6 6.6974 4.8610 -1.2750 22 6 5.2013 4.7559 -1.5870 23 6 2.7239 3.3753 1.2048 24 8 2.9500 4.0119 2.3811 25 6 2.2611 2.0677 1.1980 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.0803 1.5557 -2.1342 32 1 2.8892 3.8747 -2.1536 33 1 4.7255 7.5432 -1.9145 34 1 4.3621 7.7776 -0.1853 35 1 6.7647 8.2704 -0.7660 36 1 6.5885 6.9685 0.4357 37 1 6.9715 6.5642 -2.5657 38 1 9.0872 9.5086 -1.9204 39 1 6.8705 4.6001 -0.2309 40 1 7.2520 4.1773 -1.9177 41 1 4.8401 3.7640 -1.3151 42 1 5.0348 4.9264 -2.6507 43 1 2.1828 4.4915 2.7225 44 1 2.0795 1.5551 2.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335102806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:42 Heat of formation + Delta-G solvation = -86.577247 kcal Electronic energy + Delta-G solvation = -25008.655171 eV Core-core repulsion = 21503.518798 eV Total energy + Delta-G solvation = -3505.136372 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74904 -40.13020 -38.44267 -37.94365 -35.52288 -34.75034 -32.92909 -32.06373 -31.05531 -30.28240 -28.06767 -25.80825 -24.56369 -24.11492 -23.46761 -22.44404 -21.55204 -20.25699 -18.81141 -18.65483 -18.21199 -17.41715 -16.88762 -16.55535 -16.44520 -15.88041 -15.65538 -15.10482 -14.93435 -14.83225 -14.61540 -14.48718 -14.40833 -14.04706 -13.89441 -13.52578 -13.39448 -13.08274 -12.85002 -12.79764 -12.52146 -12.40133 -12.28568 -12.19684 -11.99232 -11.73739 -11.63618 -11.47416 -11.15465 -10.88331 -10.77848 -10.43435 -9.83544 -9.68324 -9.51444 -8.09696 -6.23460 -0.11751 0.26456 1.38687 1.41514 1.51895 1.62791 2.03628 2.42338 2.60522 3.16866 3.19605 3.42863 3.83008 3.85066 4.05604 4.22554 4.26932 4.29860 4.32754 4.44882 4.45667 4.54681 4.56475 4.60022 4.67265 4.83754 4.84716 4.92122 4.96674 5.11877 5.13218 5.14676 5.18974 5.27147 5.27570 5.41452 5.44893 5.49851 5.57861 5.64861 5.80806 5.94944 6.07088 6.36352 6.44109 6.70840 6.87240 7.07661 7.44604 8.94095 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.003348 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.671840 B = 8361.265141 C = 8705.321414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.041 4.041 4 C -0.126 4.126 5 C -0.069 4.069 6 C -0.182 4.182 7 C 0.557 3.443 8 O -0.585 6.585 9 N -0.597 5.597 10 C 0.120 3.880 11 C -0.111 4.111 12 C 0.047 3.953 13 C -0.533 4.533 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.915 5.915 17 Si 0.951 3.049 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.285 1.285 21 C -0.117 4.117 22 C 0.109 3.891 23 C 0.140 3.860 24 O -0.510 6.510 25 C -0.152 4.152 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.163 0.837 32 H 0.144 0.856 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.015 0.985 37 H 0.010 0.990 38 H 0.261 0.739 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.407 0.593 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.752 -18.138 0.229 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.041 4.041 4 C -0.144 4.144 5 C -0.088 4.088 6 C -0.186 4.186 7 C 0.348 3.652 8 O -0.467 6.467 9 N -0.328 5.328 10 C -0.002 4.002 11 C -0.150 4.150 12 C 0.029 3.971 13 C -0.571 4.571 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.554 5.554 17 Si 0.777 3.223 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.211 1.211 21 C -0.155 4.155 22 C -0.013 4.013 23 C 0.094 3.906 24 O -0.323 6.323 25 C -0.170 4.170 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.180 0.820 32 H 0.162 0.838 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.034 0.966 37 H 0.028 0.972 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.104 0.896 43 H 0.267 0.733 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.421 -17.737 0.489 24.176 hybrid contribution 0.931 1.278 0.547 1.673 sum -15.490 -16.459 1.037 22.625 Atomic orbital electron populations 1.21749 0.93811 1.02724 1.02093 1.20687 0.96715 0.90287 1.04580 1.20306 0.94640 0.97320 0.91880 1.21320 1.00050 0.93713 0.99316 1.21418 0.96057 0.95191 0.96107 1.20285 1.08616 0.93791 0.95860 1.18678 0.79612 0.88451 0.78506 1.90674 1.60034 1.53275 1.42754 1.48182 1.30909 1.09220 1.44456 1.21604 0.95961 0.81466 1.01183 1.21776 0.92174 1.03470 0.97596 1.18603 0.93484 0.90899 0.94161 1.21598 0.94884 0.95329 1.45279 0.93118 1.25711 1.02162 0.95679 0.94994 1.69973 1.36944 1.00711 1.47819 0.85611 0.80892 0.78037 0.77742 1.19295 1.20329 1.21069 1.21881 0.94639 0.98794 1.00198 1.22116 0.91744 0.91573 0.95848 1.18677 0.96006 0.91931 0.84001 1.84659 1.42374 1.69741 1.35507 1.21408 1.01932 0.93476 1.00176 0.93114 0.92434 0.90826 0.88882 0.89959 0.81953 0.83838 0.91133 0.91463 0.90609 0.96616 0.97218 0.92987 0.94523 0.90554 0.88036 0.89642 0.73323 0.83389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 71.98 0.71 -0.56 16 2 C -0.09 -0.83 6.05 29.85 0.18 -0.65 16 3 C -0.04 -0.65 5.14 -19.83 -0.10 -0.76 16 4 C -0.13 -2.02 9.67 22.24 0.22 -1.80 16 5 C -0.07 -1.51 7.50 22.52 0.17 -1.34 16 6 C -0.18 -5.38 4.88 -20.01 -0.10 -5.48 16 7 C 0.56 21.10 6.98 86.69 0.60 21.70 16 8 O -0.59 -25.74 15.88 6.34 0.10 -25.64 16 9 N -0.60 -22.57 2.97 -822.68 -2.44 -25.02 16 10 C 0.12 5.09 6.44 86.36 0.56 5.65 16 11 C -0.11 -5.53 5.15 30.67 0.16 -5.37 16 12 C 0.05 2.32 2.06 -11.51 -0.02 2.30 16 13 C -0.53 -29.36 8.56 25.60 0.22 -29.14 16 14 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 15 C 0.01 0.73 5.30 84.66 0.45 1.18 16 16 N -0.91 -52.57 11.31 21.45 0.24 -52.33 16 17 Si 0.95 43.94 29.54 68.60 2.03 45.96 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 C -0.12 -4.69 5.30 30.67 0.16 -4.53 16 22 C 0.11 3.53 5.21 86.36 0.45 3.98 16 23 C 0.14 3.84 6.69 22.84 0.15 3.99 16 24 O -0.51 -15.20 12.50 -79.33 -0.99 -16.19 16 25 C -0.15 -3.05 9.62 22.34 0.21 -2.83 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.65 8.08 -2.39 -0.02 0.63 16 30 H 0.08 0.71 8.08 -2.39 -0.02 0.70 16 31 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.14 2.78 7.25 -2.91 -0.02 2.75 16 33 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.07 2.95 6.99 -2.39 -0.02 2.94 16 35 H 0.08 4.18 6.03 -2.39 -0.01 4.17 16 36 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.10 2.79 5.06 -2.39 -0.01 2.78 16 42 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.41 9.31 9.06 -74.06 -0.67 8.64 16 44 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -70.65 353.96 3.29 -67.36 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.33 Total: 19.50 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.02 Total: -13.65 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -2.20 Total: -77.34 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.89 Total: -41.83 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -70.65 3.29 -67.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335102806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.216 kcal (2) G-P(sol) polarization free energy of solvation -70.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds