Wall clock time and date at job start Tue Mar 31 2020 09:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47388 * 2 1 4 4 C 1.53002 * 109.70956 * 294.61781 * 3 2 1 5 5 C 1.53297 * 109.68460 * 55.15272 * 3 2 1 6 6 O 1.42958 * 109.22159 * 172.02347 * 5 3 2 7 7 C 1.42953 * 114.17206 * 297.42088 * 6 5 3 8 8 C 1.53294 * 109.22174 * 62.58452 * 7 6 5 9 9 N 1.47151 * 109.68390 * 174.08266 * 3 2 1 10 10 C 1.34779 * 120.98270 * 9.72105 * 9 3 2 11 11 O 1.21544 * 119.99674 * 354.45092 * 10 9 3 12 12 C 1.47891 * 120.00220 * 174.45371 * 10 9 3 13 13 C 1.39919 * 120.02377 * 327.90073 * 12 10 9 14 14 C 1.38329 * 120.35624 * 179.71261 * 13 12 10 15 15 C 1.37758 * 120.41023 * 0.56582 * 14 13 12 16 16 C 1.40747 * 120.03958 * 359.70993 * 15 14 13 17 17 C 1.41440 * 120.17905 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99961 * 330.88687 * 17 16 15 19 19 C 1.39931 * 119.99894 * 150.87735 * 17 16 15 20 20 N 1.30831 * 120.00470 * 348.78794 * 19 17 16 21 21 Si 1.86801 * 120.00029 * 168.78330 * 19 17 16 22 22 H 1.48505 * 109.47085 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47264 * 120.00127 * 21 19 17 24 24 H 1.48492 * 109.47467 * 240.00538 * 21 19 17 25 25 C 1.38989 * 120.02284 * 148.17139 * 12 10 9 26 26 H 1.08994 * 109.46673 * 60.00315 * 1 2 3 27 27 H 1.08994 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46664 * 300.00053 * 1 2 3 29 29 H 1.09001 * 109.47161 * 239.99776 * 2 1 3 30 30 H 1.09000 * 109.47233 * 120.00081 * 2 1 3 31 31 H 1.08998 * 109.47253 * 180.53599 * 4 3 2 32 32 H 1.09000 * 109.47095 * 300.53760 * 4 3 2 33 33 H 1.09007 * 109.46896 * 60.53162 * 4 3 2 34 34 H 1.08998 * 109.50437 * 52.10616 * 5 3 2 35 35 H 1.08994 * 109.51502 * 291.95565 * 5 3 2 36 36 H 1.09004 * 109.51527 * 182.50556 * 7 6 5 37 37 H 1.09001 * 109.51896 * 302.61060 * 7 6 5 38 38 H 1.08996 * 109.68822 * 67.42165 * 8 7 6 39 39 H 1.09010 * 109.68440 * 187.93870 * 8 7 6 40 40 H 1.08004 * 119.82040 * 359.97438 * 13 12 10 41 41 H 1.07999 * 119.79134 * 180.25214 * 14 13 12 42 42 H 1.07993 * 119.97905 * 179.69830 * 15 14 13 43 43 H 0.97001 * 120.00381 * 179.97438 * 20 19 17 44 44 H 1.08007 * 120.20647 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6464 2.1289 -1.3095 5 6 1.4347 2.2042 1.1846 6 8 2.0559 3.4877 1.2857 7 6 3.4600 3.4393 1.5499 8 6 4.1691 2.7409 0.3841 9 7 3.5046 1.4503 0.1428 10 6 4.2163 0.3091 0.0557 11 8 3.6435 -0.7584 -0.0426 12 6 5.6943 0.3556 0.0796 13 6 6.3690 1.4542 -0.4642 14 6 7.7511 1.5076 -0.4402 15 6 8.4794 0.4751 0.1087 16 6 7.8183 -0.6407 0.6553 17 6 8.5632 -1.7022 1.2201 18 1 9.5550 -1.9210 0.8530 19 6 8.0151 -2.4686 2.2546 20 7 6.9172 -2.0765 2.8484 21 14 8.8509 -4.0518 2.7879 22 1 10.0676 -4.2706 1.9651 23 1 9.2332 -3.9519 4.2194 24 1 7.9167 -5.1912 2.6034 25 6 6.4143 -0.6944 0.6373 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0198 3.1530 -1.3094 32 1 2.0785 1.5847 -2.1492 33 1 0.5604 2.1381 -1.4027 34 1 1.6057 1.6435 2.1035 35 1 0.3634 2.3295 1.0277 36 1 3.8458 4.4532 1.6559 37 1 3.6383 2.8839 2.4707 38 1 4.1031 3.3606 -0.5102 39 1 5.2159 2.5736 0.6382 40 1 5.8076 2.2667 -0.9013 41 1 8.2624 2.3618 -0.8589 42 1 9.5583 0.5219 0.1194 43 1 6.5370 -2.6080 3.5653 44 1 5.8977 -1.5462 1.0546 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336362006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:49 Heat of formation + Delta-G solvation = -41.464021 kcal Electronic energy + Delta-G solvation = -25986.042207 eV Core-core repulsion = 22482.862091 eV Total energy + Delta-G solvation = -3503.180116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.66312 -38.24024 -37.13713 -35.32385 -34.39051 -33.46241 -30.20778 -29.84327 -29.50041 -28.39579 -26.30032 -25.54404 -24.46719 -22.96823 -21.88155 -20.82975 -20.05724 -18.47948 -17.41080 -16.49591 -16.03817 -15.70672 -15.53301 -15.13101 -15.09192 -14.68678 -14.58404 -13.87577 -13.66387 -13.29546 -13.07730 -12.81806 -12.70164 -12.61894 -12.35242 -12.01739 -11.95313 -11.72869 -11.53939 -11.26023 -11.23844 -11.13641 -11.09532 -10.54636 -10.52168 -10.46461 -10.36818 -9.98283 -9.89790 -9.68306 -9.29286 -8.52931 -8.15289 -7.63839 -7.49427 -6.80374 -4.47655 2.20957 2.75647 3.05879 3.09033 3.10722 3.24176 3.70031 3.86557 3.89939 4.56974 4.74037 4.88542 4.98557 5.14803 5.21876 5.35959 5.41428 5.47851 5.55140 5.55813 5.64913 5.67108 5.74832 5.78990 5.88635 5.98472 6.01112 6.07847 6.13934 6.24797 6.26098 6.51266 6.60355 6.67952 6.93845 6.94496 7.02149 7.15214 7.17276 7.33778 7.61536 7.73024 7.82928 7.97050 8.12297 8.46024 8.77361 8.77845 8.85611 10.14505 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.004604 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.336911 B = 6080.445525 C = 6813.117812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C 0.140 3.860 4 C -0.151 4.151 5 C 0.058 3.942 6 O -0.383 6.383 7 C 0.044 3.956 8 C 0.060 3.940 9 N -0.610 5.610 10 C 0.572 3.428 11 O -0.538 6.538 12 C -0.128 4.128 13 C -0.223 4.223 14 C -0.101 4.101 15 C -0.207 4.207 16 C 0.101 3.899 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.072 3.928 20 N -0.797 5.797 21 Si 0.912 3.088 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.271 1.271 25 C -0.089 4.089 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.282 0.718 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.677 8.010 -2.288 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.141 4.141 3 C 0.055 3.945 4 C -0.209 4.209 5 C -0.020 4.020 6 O -0.301 6.301 7 C -0.033 4.033 8 C -0.063 4.063 9 N -0.344 5.344 10 C 0.364 3.636 11 O -0.417 6.417 12 C -0.131 4.131 13 C -0.242 4.242 14 C -0.119 4.119 15 C -0.227 4.227 16 C 0.098 3.902 17 C -0.490 4.490 18 H 0.099 0.901 19 C -0.145 4.145 20 N -0.423 5.423 21 Si 0.737 3.263 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.196 1.196 25 C -0.109 4.109 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.144 0.856 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.093 0.907 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.232 7.528 -2.158 12.106 hybrid contribution 0.543 -0.773 0.373 1.016 sum -8.689 6.755 -1.785 11.150 Atomic orbital electron populations 1.22084 0.97164 1.01680 1.01115 1.21971 0.93265 0.93290 1.05599 1.21272 0.80411 0.97368 0.95461 1.22096 1.01352 1.00921 0.96531 1.23091 0.97409 0.84510 0.96979 1.87892 1.21632 1.28060 1.92505 1.23076 0.81292 1.01645 0.97314 1.23017 1.00394 0.84587 0.98277 1.48076 1.05746 1.07427 1.73198 1.18902 0.87948 0.82480 0.74253 1.90718 1.71207 1.29711 1.50020 1.19501 0.90247 0.97892 1.05450 1.20669 0.94236 0.99029 1.10287 1.20477 0.93540 0.97811 1.00059 1.21171 0.98070 0.95091 1.08320 1.17608 0.91572 0.91444 0.89559 1.19615 1.02255 1.11835 1.15299 0.90119 1.25920 0.94525 0.98615 0.95432 1.69757 1.17818 1.36291 1.18416 0.86189 0.80182 0.81101 0.78853 1.18395 1.19931 1.19650 1.21575 0.94051 0.96798 0.98483 0.92851 0.92559 0.93133 0.89655 0.90243 0.92030 0.92391 0.91574 0.92739 0.88068 0.87944 0.92553 0.91291 0.85641 0.88005 0.88789 0.88558 0.90718 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.21 37.16 0.34 -1.58 16 2 C -0.10 -1.62 3.41 -26.73 -0.09 -1.71 16 3 C 0.14 2.07 0.80 -131.31 -0.11 1.97 16 4 C -0.15 -1.95 8.29 37.16 0.31 -1.64 16 5 C 0.06 0.77 4.89 37.31 0.18 0.95 16 6 O -0.38 -5.31 10.39 -35.23 -0.37 -5.67 16 7 C 0.04 0.58 6.98 37.31 0.26 0.84 16 8 C 0.06 0.89 4.49 -3.53 -0.02 0.87 16 9 N -0.61 -10.55 2.71 -158.59 -0.43 -10.98 16 10 C 0.57 12.27 7.34 -12.31 -0.09 12.18 16 11 O -0.54 -12.65 12.29 5.33 0.07 -12.58 16 12 C -0.13 -2.93 5.38 -105.04 -0.57 -3.50 16 13 C -0.22 -4.53 7.40 -38.92 -0.29 -4.82 16 14 C -0.10 -2.07 10.01 -39.72 -0.40 -2.46 16 15 C -0.21 -4.77 9.78 -38.81 -0.38 -5.15 16 16 C 0.10 2.60 5.54 -106.87 -0.59 2.01 16 17 C -0.46 -11.92 9.06 -37.73 -0.34 -12.26 16 18 H 0.08 2.00 7.87 -52.49 -0.41 1.58 16 19 C 0.07 1.80 5.24 -17.34 -0.09 1.71 16 20 N -0.80 -20.63 10.89 55.55 0.60 -20.03 16 21 Si 0.91 18.64 29.57 -169.99 -5.03 13.62 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 C -0.09 -2.31 8.20 -38.44 -0.32 -2.62 16 26 H 0.05 0.56 6.61 -51.93 -0.34 0.22 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.53 6.55 -51.93 -0.34 0.19 16 29 H 0.08 1.53 6.72 -51.93 -0.35 1.18 16 30 H 0.08 1.46 6.86 -51.93 -0.36 1.10 16 31 H 0.06 0.78 7.20 -51.93 -0.37 0.41 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.72 6.63 -51.93 -0.34 0.37 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.12 6.87 -51.93 -0.36 0.77 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.92 7.43 -51.93 -0.39 0.54 16 39 H 0.13 2.03 4.53 -51.92 -0.24 1.80 16 40 H 0.10 1.79 5.62 -52.48 -0.30 1.49 16 41 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 43 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 44 H 0.13 3.67 6.15 -52.48 -0.32 3.35 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -28.17 337.34 -8.46 -36.63 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -6.21 Total: 9.16 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -2.18 Total: -15.22 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.17 Total: -31.00 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.30 Total: -18.26 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.17 -8.46 -36.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336362006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.838 kcal (2) G-P(sol) polarization free energy of solvation -28.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds