Wall clock time and date at job start Tue Mar 31 2020 07:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99944 * 2 1 4 4 H 1.09001 * 112.84935 * 341.19701 * 3 2 1 5 5 C 1.53777 * 113.61432 * 112.50356 * 3 2 1 6 6 C 1.53778 * 87.08125 * 139.98434 * 5 3 2 7 7 H 1.09007 * 113.68752 * 220.00777 * 6 5 3 8 8 N 1.46498 * 113.61513 * 89.11787 * 6 5 3 9 9 C 1.34777 * 119.99994 * 107.22719 * 8 6 5 10 10 O 1.21587 * 120.00116 * 0.27311 * 9 8 6 11 11 C 1.47643 * 120.00082 * 180.27348 * 9 8 6 12 12 C 1.40015 * 119.89540 * 359.72848 * 11 9 8 13 13 C 1.36310 * 120.10723 * 179.72043 * 12 11 9 14 14 C 1.40886 * 119.89377 * 0.52466 * 13 12 11 15 15 C 1.41110 * 120.10644 * 179.76302 * 14 13 12 16 16 H 1.07995 * 120.00033 * 204.62064 * 15 14 13 17 17 C 1.40222 * 119.99568 * 24.63203 * 15 14 13 18 18 N 1.30644 * 120.00610 * 17.89388 * 17 15 14 19 19 Si 1.86804 * 119.99584 * 197.89718 * 17 15 14 20 20 H 1.48503 * 109.47252 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47298 * 119.99631 * 19 17 15 22 22 H 1.48506 * 109.47246 * 239.99581 * 19 17 15 23 23 C 1.40890 * 119.79157 * 359.74795 * 14 13 12 24 24 C 1.36320 * 119.88950 * 359.97438 * 23 14 13 25 25 C 1.53781 * 113.61450 * 210.00462 * 3 2 1 26 26 C 1.52993 * 113.61726 * 105.47248 * 25 3 2 27 27 C 1.52997 * 113.68917 * 334.57462 * 25 3 2 28 28 H 1.09006 * 109.46952 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47435 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47315 * 60.00369 * 1 2 3 31 31 H 1.08995 * 113.61253 * 25.43351 * 5 3 2 32 32 H 1.09001 * 113.61223 * 254.53296 * 5 3 2 33 33 H 0.96995 * 120.00224 * 287.50146 * 8 6 5 34 34 H 1.08004 * 119.94620 * 359.97438 * 12 11 9 35 35 H 1.08008 * 120.05795 * 180.29866 * 13 12 11 36 36 H 0.96998 * 120.00258 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.05740 * 180.02562 * 23 14 13 38 38 H 1.08004 * 119.94441 * 180.02562 * 24 23 14 39 39 H 1.09007 * 109.47280 * 157.49098 * 26 25 3 40 40 H 1.09001 * 109.47509 * 277.49352 * 26 25 3 41 41 H 1.09000 * 109.47569 * 37.49348 * 26 25 3 42 42 H 1.08996 * 109.47429 * 322.46857 * 27 25 3 43 43 H 1.08994 * 109.47215 * 82.47206 * 27 25 3 44 44 H 1.09008 * 109.47045 * 202.47059 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7534 1.6489 1.3017 6 6 3.8226 2.3182 0.4222 7 1 4.8430 2.1410 0.7621 8 7 3.5531 3.7310 0.1437 9 6 4.2897 4.6882 0.7418 10 8 5.1811 4.3791 1.5087 11 6 4.0141 6.1122 0.4657 12 6 2.9908 6.4656 -0.4222 13 6 2.7289 7.7791 -0.6758 14 6 3.4972 8.7815 -0.0514 15 6 3.2332 10.1425 -0.3146 16 1 4.0126 10.8786 -0.1846 17 6 1.9588 10.5390 -0.7446 18 7 0.9352 9.7456 -0.5732 19 14 1.7248 12.2019 -1.5629 20 1 3.0306 12.9052 -1.6373 21 1 1.1877 12.0080 -2.9337 22 1 0.7699 13.0150 -0.7676 23 6 4.5296 8.4209 0.8369 24 6 4.7803 7.1048 1.0886 25 6 3.3755 1.3720 -0.7046 26 6 3.3233 2.0390 -2.0805 27 6 4.1254 0.0385 -0.7188 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.1166 0.7740 1.8409 32 1 2.2140 2.3476 1.9411 33 1 2.8420 3.9777 -0.4681 34 1 2.4053 5.6964 -0.9037 35 1 1.9362 8.0509 -1.3571 36 1 0.0538 10.0198 -0.8711 37 1 5.1209 9.1858 1.3182 38 1 5.5712 6.8273 1.7697 39 1 4.3141 2.4108 -2.3419 40 1 3.0001 1.3115 -2.8250 41 1 2.6185 2.8702 -2.0549 42 1 3.9620 -0.4804 0.2257 43 1 3.7573 -0.5767 -1.5398 44 1 5.1915 0.2226 -0.8525 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340308854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:33 Heat of formation + Delta-G solvation = -53.136166 kcal Electronic energy + Delta-G solvation = -24582.788815 eV Core-core repulsion = 21079.102557 eV Total energy + Delta-G solvation = -3503.686258 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.65152 -38.64213 -37.13421 -36.39901 -33.89987 -32.90053 -30.67438 -29.95123 -29.46542 -27.47076 -27.04407 -26.00304 -23.99520 -22.66002 -21.79544 -20.95989 -19.66181 -18.68809 -17.55139 -16.94798 -16.54141 -15.71006 -15.50692 -15.33306 -15.23940 -14.31869 -14.07149 -13.98285 -13.61475 -13.29875 -13.20361 -13.12864 -12.79101 -12.59699 -12.24881 -12.17285 -12.10192 -11.95145 -11.65385 -11.49162 -11.39249 -11.30347 -11.00488 -10.96654 -10.74054 -10.61542 -10.20583 -10.06013 -9.59388 -9.43304 -9.37946 -8.99714 -8.58307 -7.75306 -7.57302 -7.06815 -4.63159 2.19765 2.88129 2.93128 2.98688 3.00896 3.62795 3.71526 3.74000 3.81888 4.31746 4.44732 4.55515 4.78429 4.88624 5.12566 5.17424 5.25672 5.30170 5.48286 5.54599 5.59740 5.65566 5.66332 5.79822 5.80093 5.93392 5.96414 5.97060 6.03101 6.18998 6.27665 6.29458 6.35208 6.74106 6.79880 6.92495 7.03388 7.10466 7.14564 7.40773 7.62599 7.75980 7.83314 8.04233 8.21342 8.37012 8.60342 8.72329 9.05709 9.85177 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.003199 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.861861 B = 8750.873475 C = 9517.909218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.373 6.373 3 C 0.069 3.931 4 H 0.086 0.914 5 C -0.169 4.169 6 C 0.137 3.863 7 H 0.106 0.894 8 N -0.724 5.724 9 C 0.574 3.426 10 O -0.573 6.573 11 C -0.285 4.285 12 C -0.063 4.063 13 C -0.178 4.178 14 C 0.129 3.871 15 C -0.442 4.442 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.772 5.772 19 Si 0.913 3.087 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.239 4.239 24 C -0.021 4.021 25 C -0.090 4.090 26 C -0.137 4.137 27 C -0.115 4.115 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.396 0.604 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.286 0.714 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 -12.948 -3.324 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.011 3.989 4 H 0.104 0.896 5 C -0.208 4.208 6 C 0.030 3.970 7 H 0.123 0.877 8 N -0.376 5.376 9 C 0.370 3.630 10 O -0.455 6.455 11 C -0.289 4.289 12 C -0.082 4.082 13 C -0.197 4.197 14 C 0.125 3.875 15 C -0.469 4.469 16 H 0.104 0.896 17 C -0.147 4.147 18 N -0.395 5.395 19 Si 0.736 3.264 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.258 4.258 24 C -0.040 4.040 25 C -0.091 4.091 26 C -0.194 4.194 27 C -0.172 4.172 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.232 0.768 34 H 0.104 0.896 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.429 -13.332 -2.811 13.839 hybrid contribution -1.044 1.079 -0.598 1.616 sum -3.473 -12.253 -3.409 13.184 Atomic orbital electron populations 1.22769 0.81599 1.02416 0.99971 1.87917 1.19185 1.27475 1.94584 1.23983 0.93325 0.84906 0.96665 0.89635 1.23950 0.98489 1.01061 0.97289 1.21589 0.99707 0.80961 0.94757 0.87651 1.45652 1.38402 1.04333 1.49192 1.18601 0.79978 0.85974 0.78492 1.90632 1.33243 1.83801 1.37785 1.18879 1.07136 0.90300 1.12590 1.20446 0.95304 0.96028 0.96405 1.20968 1.03597 0.91232 1.03925 1.17790 0.89291 0.93431 0.86946 1.19887 0.96458 0.93767 1.36827 0.89649 1.26102 0.95460 0.99807 0.93316 1.69748 1.00588 1.37014 1.32120 0.86175 0.79766 0.80986 0.79449 1.18034 1.19370 1.19661 1.20723 1.05239 0.94610 1.05263 1.20362 0.95751 0.92352 0.95551 1.22569 0.94883 0.96550 0.95143 1.21701 1.02492 0.99975 0.95253 1.21363 0.98965 0.94257 1.02632 0.89935 0.94099 0.94139 0.88684 0.90796 0.76756 0.89550 0.86216 0.90283 0.88361 0.88082 0.91714 0.92343 0.92624 0.91857 0.92074 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.36 16 2 O -0.37 -4.32 9.81 -35.23 -0.35 -4.67 16 3 C 0.07 0.81 3.60 -25.92 -0.09 0.72 16 4 H 0.09 0.97 7.69 -51.93 -0.40 0.57 16 5 C -0.17 -2.19 7.36 -25.92 -0.19 -2.38 16 6 C 0.14 1.96 3.77 -67.12 -0.25 1.71 16 7 H 0.11 1.68 7.42 -51.92 -0.39 1.30 16 8 N -0.72 -11.95 4.72 -54.02 -0.26 -12.21 16 9 C 0.57 12.08 7.76 -12.42 -0.10 11.98 16 10 O -0.57 -13.55 15.92 5.29 0.08 -13.46 16 11 C -0.28 -6.43 5.89 -104.73 -0.62 -7.04 16 12 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 13 C -0.18 -4.29 8.64 -39.27 -0.34 -4.63 16 14 C 0.13 3.24 5.58 -106.80 -0.60 2.65 16 15 C -0.44 -10.88 9.04 -37.75 -0.34 -11.22 16 16 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 18 N -0.77 -18.23 10.95 55.56 0.61 -17.62 16 19 Si 0.91 17.05 29.60 -169.99 -5.03 12.02 16 20 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 21 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 22 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 23 C -0.24 -5.74 9.73 -39.27 -0.38 -6.12 16 24 C -0.02 -0.49 9.52 -39.61 -0.38 -0.87 16 25 C -0.09 -1.06 1.33 -153.70 -0.21 -1.27 16 26 C -0.14 -1.52 8.58 37.15 0.32 -1.21 16 27 C -0.11 -1.21 8.46 37.16 0.31 -0.90 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 1.16 7.66 -51.93 -0.40 0.76 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.40 5.93 5.17 -40.82 -0.21 5.71 16 34 H 0.09 1.59 6.37 -52.48 -0.33 1.26 16 35 H 0.12 2.92 6.15 -52.48 -0.32 2.60 16 36 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 37 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.10 2.30 7.63 -52.48 -0.40 1.89 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.61 6.63 -51.93 -0.34 0.27 16 42 H 0.06 0.68 7.19 -51.93 -0.37 0.30 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -27.89 358.37 -8.29 -36.18 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.52 Total: 11.70 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.23 Total: -17.34 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.35 Total: -29.83 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.26 Total: -18.13 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.89 -8.29 -36.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340308854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.955 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds