Wall clock time and date at job start Tue Mar 31 2020 07:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99944 * 2 1 4 4 H 1.09001 * 112.84935 * 341.19701 * 3 2 1 5 5 C 1.53777 * 113.61432 * 112.50356 * 3 2 1 6 6 C 1.53778 * 87.08125 * 139.98434 * 5 3 2 7 7 H 1.09007 * 113.68752 * 220.00777 * 6 5 3 8 8 N 1.46498 * 113.61513 * 89.11787 * 6 5 3 9 9 C 1.34777 * 119.99994 * 107.22719 * 8 6 5 10 10 O 1.21587 * 120.00116 * 0.27311 * 9 8 6 11 11 C 1.47643 * 120.00082 * 180.27348 * 9 8 6 12 12 C 1.40015 * 119.89540 * 359.72848 * 11 9 8 13 13 C 1.36310 * 120.10723 * 179.72043 * 12 11 9 14 14 C 1.40886 * 119.89377 * 0.52466 * 13 12 11 15 15 C 1.41110 * 120.10644 * 179.76302 * 14 13 12 16 16 H 1.07995 * 120.00033 * 204.62064 * 15 14 13 17 17 C 1.40222 * 119.99568 * 24.63203 * 15 14 13 18 18 N 1.30644 * 120.00610 * 17.89388 * 17 15 14 19 19 Si 1.86804 * 119.99584 * 197.89718 * 17 15 14 20 20 H 1.48503 * 109.47252 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47298 * 119.99631 * 19 17 15 22 22 H 1.48506 * 109.47246 * 239.99581 * 19 17 15 23 23 C 1.40890 * 119.79157 * 359.74795 * 14 13 12 24 24 C 1.36320 * 119.88950 * 359.97438 * 23 14 13 25 25 C 1.53781 * 113.61450 * 210.00462 * 3 2 1 26 26 C 1.52993 * 113.61726 * 105.47248 * 25 3 2 27 27 C 1.52997 * 113.68917 * 334.57462 * 25 3 2 28 28 H 1.09006 * 109.46952 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47435 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47315 * 60.00369 * 1 2 3 31 31 H 1.08995 * 113.61253 * 25.43351 * 5 3 2 32 32 H 1.09001 * 113.61223 * 254.53296 * 5 3 2 33 33 H 0.96995 * 120.00224 * 287.50146 * 8 6 5 34 34 H 1.08004 * 119.94620 * 359.97438 * 12 11 9 35 35 H 1.08008 * 120.05795 * 180.29866 * 13 12 11 36 36 H 0.96998 * 120.00258 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.05740 * 180.02562 * 23 14 13 38 38 H 1.08004 * 119.94441 * 180.02562 * 24 23 14 39 39 H 1.09007 * 109.47280 * 157.49098 * 26 25 3 40 40 H 1.09001 * 109.47509 * 277.49352 * 26 25 3 41 41 H 1.09000 * 109.47569 * 37.49348 * 26 25 3 42 42 H 1.08996 * 109.47429 * 322.46857 * 27 25 3 43 43 H 1.08994 * 109.47215 * 82.47206 * 27 25 3 44 44 H 1.09008 * 109.47045 * 202.47059 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7534 1.6489 1.3017 6 6 3.8226 2.3182 0.4222 7 1 4.8430 2.1410 0.7621 8 7 3.5531 3.7310 0.1437 9 6 4.2897 4.6882 0.7418 10 8 5.1811 4.3791 1.5087 11 6 4.0141 6.1122 0.4657 12 6 2.9908 6.4656 -0.4222 13 6 2.7289 7.7791 -0.6758 14 6 3.4972 8.7815 -0.0514 15 6 3.2332 10.1425 -0.3146 16 1 4.0126 10.8786 -0.1846 17 6 1.9588 10.5390 -0.7446 18 7 0.9352 9.7456 -0.5732 19 14 1.7248 12.2019 -1.5629 20 1 3.0306 12.9052 -1.6373 21 1 1.1877 12.0080 -2.9337 22 1 0.7699 13.0150 -0.7676 23 6 4.5296 8.4209 0.8369 24 6 4.7803 7.1048 1.0886 25 6 3.3755 1.3720 -0.7046 26 6 3.3233 2.0390 -2.0805 27 6 4.1254 0.0385 -0.7188 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.1166 0.7740 1.8409 32 1 2.2140 2.3476 1.9411 33 1 2.8420 3.9777 -0.4681 34 1 2.4053 5.6964 -0.9037 35 1 1.9362 8.0509 -1.3571 36 1 0.0538 10.0198 -0.8711 37 1 5.1209 9.1858 1.3182 38 1 5.5712 6.8273 1.7697 39 1 4.3141 2.4108 -2.3419 40 1 3.0001 1.3115 -2.8250 41 1 2.6185 2.8702 -2.0549 42 1 3.9620 -0.4804 0.2257 43 1 3.7573 -0.5767 -1.5398 44 1 5.1915 0.2226 -0.8525 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340308854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:31 Heat of formation + Delta-G solvation = -67.911642 kcal Electronic energy + Delta-G solvation = -24583.429528 eV Core-core repulsion = 21079.102557 eV Total energy + Delta-G solvation = -3504.326971 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 9.49 seconds Orbital eigenvalues (eV) -41.80194 -40.21031 -38.79617 -37.44187 -35.67736 -34.35088 -32.04459 -31.36470 -31.25693 -28.41029 -28.01261 -27.49064 -25.20336 -23.82902 -23.28254 -22.76200 -21.28420 -19.85362 -19.35946 -18.30764 -17.70506 -17.20287 -16.75700 -16.38429 -16.26247 -15.75691 -15.71816 -15.54624 -15.07018 -14.58642 -14.49396 -14.19047 -14.12382 -13.84541 -13.70005 -13.64980 -13.19264 -13.15993 -12.99624 -12.85516 -12.66606 -12.57696 -12.37311 -12.31959 -11.88399 -11.76470 -11.68641 -11.39495 -11.20148 -11.12045 -10.72666 -10.32680 -10.00564 -9.58128 -9.41138 -8.80219 -6.48812 0.43021 1.14569 1.38610 1.42120 1.55439 2.10664 2.17534 2.28472 2.76869 2.85456 3.30841 3.49619 3.67947 3.82427 3.86212 4.17107 4.25470 4.29001 4.34855 4.44211 4.51070 4.56360 4.60800 4.71732 4.80246 4.87467 4.88710 4.90141 4.91775 4.98577 5.02867 5.08630 5.12066 5.15476 5.29346 5.36095 5.42443 5.57318 5.64424 5.82040 5.94051 5.98953 6.22228 6.28477 6.53421 6.68547 6.76771 6.88344 7.43098 8.15150 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.003199 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.861861 B = 8750.873475 C = 9517.909218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.383 6.383 3 C 0.078 3.922 4 H 0.093 0.907 5 C -0.166 4.166 6 C 0.123 3.877 7 H 0.087 0.913 8 N -0.705 5.705 9 C 0.575 3.425 10 O -0.604 6.604 11 C -0.294 4.294 12 C -0.053 4.053 13 C -0.197 4.197 14 C 0.102 3.898 15 C -0.473 4.473 16 H 0.085 0.915 17 C 0.039 3.961 18 N -0.797 5.797 19 Si 0.987 3.013 20 H -0.258 1.258 21 H -0.259 1.259 22 H -0.264 1.264 23 C -0.254 4.254 24 C -0.032 4.032 25 C -0.079 4.079 26 C -0.138 4.138 27 C -0.113 4.113 28 H 0.099 0.901 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.406 0.594 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.297 0.703 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 -13.768 -4.698 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.302 6.302 3 C 0.019 3.981 4 H 0.110 0.890 5 C -0.205 4.205 6 C 0.017 3.983 7 H 0.105 0.895 8 N -0.356 5.356 9 C 0.369 3.631 10 O -0.488 6.488 11 C -0.298 4.298 12 C -0.072 4.072 13 C -0.216 4.216 14 C 0.099 3.901 15 C -0.500 4.500 16 H 0.103 0.897 17 C -0.180 4.180 18 N -0.420 5.420 19 Si 0.807 3.193 20 H -0.181 1.181 21 H -0.184 1.184 22 H -0.189 1.189 23 C -0.273 4.273 24 C -0.051 4.051 25 C -0.081 4.081 26 C -0.195 4.195 27 C -0.170 4.170 28 H 0.118 0.882 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.244 0.756 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.908 -14.196 -4.196 15.310 hybrid contribution -0.612 1.214 -0.120 1.365 sum -4.521 -12.981 -4.317 14.408 Atomic orbital electron populations 1.22966 0.80156 1.03792 1.00477 1.87898 1.20760 1.27002 1.94542 1.23857 0.93412 0.85461 0.95323 0.88959 1.23929 0.98010 1.00847 0.97755 1.21770 0.99329 0.79975 0.97211 0.89460 1.45437 1.37409 1.04749 1.48010 1.18406 0.80093 0.86076 0.78524 1.90614 1.34726 1.84167 1.39299 1.19152 1.07017 0.91251 1.12376 1.20690 0.94805 0.96132 0.95525 1.21005 1.03983 0.92045 1.04564 1.18133 0.90014 0.94356 0.87595 1.20140 0.97570 0.93761 1.38505 0.89737 1.26909 0.94474 1.03533 0.93112 1.69759 1.01327 1.38830 1.32124 0.85077 0.79577 0.76106 0.78570 1.18129 1.18363 1.18878 1.20859 1.05634 0.95112 1.05696 1.20503 0.96149 0.92580 0.95884 1.22515 0.94780 0.96187 0.94573 1.21719 1.02188 1.00463 0.95117 1.21367 0.99021 0.93611 1.03012 0.88236 0.93995 0.93226 0.87968 0.91918 0.75622 0.86050 0.86752 0.89157 0.87844 0.88004 0.92475 0.90650 0.92432 0.92047 0.90915 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.85 113.37 1.23 1.57 16 2 O -0.38 -7.89 9.81 -148.98 -1.46 -9.35 16 3 C 0.08 1.65 3.60 31.12 0.11 1.76 16 4 H 0.09 1.85 7.69 -2.39 -0.02 1.83 16 5 C -0.17 -4.13 7.36 31.12 0.23 -3.90 16 6 C 0.12 3.42 3.77 45.52 0.17 3.60 16 7 H 0.09 2.78 7.42 -2.38 -0.02 2.77 16 8 N -0.70 -22.56 4.72 -443.08 -2.09 -24.66 16 9 C 0.58 24.12 7.76 86.73 0.67 24.79 16 10 O -0.60 -28.89 15.92 -3.99 -0.06 -28.95 16 11 C -0.29 -13.30 5.89 -19.93 -0.12 -13.42 16 12 C -0.05 -2.26 9.47 22.25 0.21 -2.05 16 13 C -0.20 -9.56 8.64 22.47 0.19 -9.37 16 14 C 0.10 5.26 5.58 -21.28 -0.12 5.15 16 15 C -0.47 -23.66 9.04 23.46 0.21 -23.45 16 16 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 17 C 0.04 1.78 5.14 85.35 0.44 2.22 16 18 N -0.80 -37.45 10.95 21.87 0.24 -37.21 16 19 Si 0.99 34.29 29.60 68.60 2.03 36.32 16 20 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 21 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 22 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 23 C -0.25 -12.55 9.73 22.47 0.22 -12.33 16 24 C -0.03 -1.53 9.52 22.25 0.21 -1.32 16 25 C -0.08 -1.71 1.33 -51.66 -0.07 -1.78 16 26 C -0.14 -2.73 8.58 71.98 0.62 -2.11 16 27 C -0.11 -2.16 8.46 71.98 0.61 -1.55 16 28 H 0.10 1.16 8.14 -2.38 -0.02 1.15 16 29 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 2.38 7.66 -2.39 -0.02 2.36 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 33 H 0.41 11.37 5.17 -92.71 -0.48 10.89 16 34 H 0.12 4.23 6.37 -2.91 -0.02 4.21 16 35 H 0.11 5.62 6.15 -2.91 -0.02 5.60 16 36 H 0.30 12.32 8.29 -92.71 -0.77 11.56 16 37 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.10 4.77 7.63 -2.91 -0.02 4.75 16 39 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.11 6.63 -2.39 -0.02 1.09 16 42 H 0.06 1.20 7.19 -2.39 -0.02 1.18 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.06 1.11 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -60.28 358.37 4.00 -56.28 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: 0.52 Total: 39.78 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 4.82 Total: -32.21 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -1.85 Total: -61.87 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -1.53 Total: -38.31 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 2.03 Total: 36.32 kcal Total: -60.28 4.00 -56.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340308854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.632 kcal (2) G-P(sol) polarization free energy of solvation -60.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.49 seconds