Wall clock time and date at job start Tue Mar 31 2020 07:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00090 * 2 1 4 4 H 1.09008 * 112.85049 * 18.80279 * 3 2 1 5 5 C 1.53778 * 113.61190 * 247.49774 * 3 2 1 6 6 C 1.53780 * 87.08168 * 270.87931 * 5 3 2 7 7 H 1.08996 * 113.68992 * 89.12656 * 6 5 3 8 8 N 1.46497 * 113.61676 * 220.01713 * 6 5 3 9 9 C 1.34776 * 120.00133 * 252.22511 * 8 6 5 10 10 O 1.21580 * 120.00098 * 0.27152 * 9 8 6 11 11 C 1.47646 * 119.99732 * 180.27787 * 9 8 6 12 12 C 1.40009 * 119.89614 * 359.72233 * 11 9 8 13 13 C 1.36320 * 120.10574 * 179.71768 * 12 11 9 14 14 C 1.40896 * 119.88861 * 0.58178 * 13 12 11 15 15 C 1.41107 * 120.10296 * 179.71703 * 14 13 12 16 16 H 1.08001 * 120.00056 * 150.12623 * 15 14 13 17 17 C 1.40231 * 119.99995 * 330.13572 * 15 14 13 18 18 N 1.30643 * 120.00215 * 161.75065 * 17 15 14 19 19 Si 1.86800 * 119.99786 * 341.74730 * 17 15 14 20 20 H 1.48500 * 109.47118 * 95.41440 * 19 17 15 21 21 H 1.48500 * 109.46955 * 215.41637 * 19 17 15 22 22 H 1.48499 * 109.47295 * 335.41245 * 19 17 15 23 23 C 1.40884 * 119.79246 * 359.69018 * 14 13 12 24 24 C 1.36318 * 119.89441 * 0.02562 * 23 14 13 25 25 C 1.53775 * 113.61656 * 149.99848 * 3 2 1 26 26 C 1.52995 * 113.61642 * 334.56489 * 25 3 2 27 27 C 1.53003 * 113.69199 * 203.67150 * 25 3 2 28 28 H 1.09004 * 109.47521 * 299.99989 * 1 2 3 29 29 H 1.08995 * 109.47213 * 59.99940 * 1 2 3 30 30 H 1.09000 * 109.47445 * 180.02562 * 1 2 3 31 31 H 1.09008 * 113.61241 * 156.33083 * 5 3 2 32 32 H 1.09000 * 113.61614 * 25.43355 * 5 3 2 33 33 H 0.97003 * 119.99860 * 72.50231 * 8 6 5 34 34 H 1.07999 * 119.95071 * 0.02562 * 12 11 9 35 35 H 1.07993 * 120.05594 * 180.29699 * 13 12 11 36 36 H 0.97001 * 120.00217 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.05314 * 180.02562 * 23 14 13 38 38 H 1.08001 * 119.94917 * 179.97438 * 24 23 14 39 39 H 1.08997 * 109.47262 * 157.49375 * 26 25 3 40 40 H 1.09003 * 109.47420 * 277.49744 * 26 25 3 41 41 H 1.08998 * 109.46773 * 37.49743 * 26 25 3 42 42 H 1.08997 * 109.47079 * 322.47192 * 27 25 3 43 43 H 1.09007 * 109.47035 * 82.46596 * 27 25 3 44 44 H 1.08997 * 109.47487 * 202.46553 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 0.3238 5 6 2.7534 1.6487 -1.3018 6 6 4.0061 1.0330 -0.6565 7 1 4.1098 -0.0372 -0.8353 8 7 5.2363 1.7781 -0.9352 9 6 6.1547 1.2705 -1.7810 10 8 5.9599 0.1965 -2.3166 11 6 7.3973 2.0186 -2.0570 12 6 7.6167 3.2578 -1.4434 13 6 8.7650 3.9495 -1.6908 14 6 9.7263 3.4211 -2.5750 15 6 10.9139 4.1360 -2.8389 16 1 11.8213 3.6041 -3.0842 17 6 10.9160 5.5372 -2.7825 18 7 12.0450 6.1847 -2.6695 19 14 9.3044 6.4778 -2.8691 20 1 8.8363 6.7853 -1.4938 21 1 9.5100 7.7442 -3.6168 22 1 8.2858 5.6516 -3.5655 23 6 9.4984 2.1764 -3.1944 24 6 8.3496 1.4893 -2.9364 25 6 3.3755 1.3719 0.7045 26 6 3.5741 0.2826 1.7603 27 6 3.7359 2.7680 1.2163 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 2.8388 2.7197 -1.4863 32 1 2.3926 1.0962 -2.1693 33 1 5.3918 2.6349 -0.5078 34 1 6.8773 3.6641 -0.7693 35 1 8.9356 4.9030 -1.2134 36 1 12.0465 7.1540 -2.6309 37 1 10.2326 1.7672 -3.8726 38 1 8.1738 0.5353 -3.4110 39 1 4.6401 0.1267 1.9255 40 1 3.1030 0.5909 2.6937 41 1 3.1205 -0.6461 1.4139 42 1 3.3915 3.5166 0.5028 43 1 3.2557 2.9368 2.1802 44 1 4.8171 2.8453 1.3305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340308860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:03 Heat of formation + Delta-G solvation = -50.008569 kcal Electronic energy + Delta-G solvation = -24628.255126 eV Core-core repulsion = 21124.704491 eV Total energy + Delta-G solvation = -3503.550635 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -40.69601 -38.83245 -37.31472 -36.45667 -33.85174 -32.99573 -30.87216 -30.43086 -29.87637 -27.76129 -26.88028 -26.07222 -24.11836 -22.58023 -21.72146 -21.36684 -19.70367 -18.89476 -17.62657 -17.29212 -16.63017 -15.74274 -15.64602 -15.50377 -15.02019 -14.40523 -14.20188 -14.04294 -13.86758 -13.51777 -13.40848 -13.18532 -12.87151 -12.63287 -12.51514 -12.34594 -12.27227 -12.04025 -11.88608 -11.74532 -11.65136 -11.07196 -10.99909 -10.93500 -10.73072 -10.39778 -10.29486 -10.21272 -9.74440 -9.61570 -9.34450 -9.04792 -8.59626 -7.95647 -7.73665 -7.22380 -4.72784 2.01188 2.66894 2.93190 3.07196 3.16587 3.38194 3.67059 3.75465 3.80400 4.30057 4.36287 4.48228 4.79125 4.83695 4.99664 5.06547 5.11757 5.17761 5.30820 5.38629 5.46853 5.49445 5.51581 5.69208 5.75706 5.77421 5.81176 5.90403 5.95137 6.02001 6.15943 6.21044 6.35604 6.43615 6.61999 6.73528 6.91161 6.97208 7.02323 7.24594 7.37461 7.54456 7.68032 7.93798 8.10804 8.14205 8.45054 8.54542 8.97975 9.77575 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025078 B = 0.003274 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.266593 B = 8551.101603 C = 9044.410009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.073 3.927 4 H 0.076 0.924 5 C -0.173 4.173 6 C 0.145 3.855 7 H 0.116 0.884 8 N -0.731 5.731 9 C 0.572 3.428 10 O -0.570 6.570 11 C -0.284 4.284 12 C -0.036 4.036 13 C -0.248 4.248 14 C 0.107 3.893 15 C -0.425 4.425 16 H 0.096 0.904 17 C 0.082 3.918 18 N -0.787 5.787 19 Si 0.916 3.084 20 H -0.267 1.267 21 H -0.288 1.288 22 H -0.241 1.241 23 C -0.221 4.221 24 C -0.017 4.017 25 C -0.094 4.094 26 C -0.132 4.132 27 C -0.135 4.135 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.396 0.604 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.291 0.709 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.422 -2.638 7.448 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.014 3.986 4 H 0.094 0.906 5 C -0.212 4.212 6 C 0.039 3.961 7 H 0.134 0.866 8 N -0.383 5.383 9 C 0.366 3.634 10 O -0.451 6.451 11 C -0.288 4.288 12 C -0.055 4.055 13 C -0.267 4.267 14 C 0.103 3.897 15 C -0.452 4.452 16 H 0.114 0.886 17 C -0.141 4.141 18 N -0.409 5.409 19 Si 0.742 3.258 20 H -0.193 1.193 21 H -0.215 1.215 22 H -0.164 1.164 23 C -0.241 4.241 24 C -0.036 4.036 25 C -0.095 4.095 26 C -0.189 4.189 27 C -0.192 4.192 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.233 0.767 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.217 -3.349 7.071 19.826 hybrid contribution -0.648 1.310 0.219 1.478 sum -18.865 -2.039 7.290 20.327 Atomic orbital electron populations 1.22800 0.81113 1.02730 0.99876 1.87883 1.19435 1.26367 1.94465 1.23029 0.93822 0.85069 0.96660 0.90580 1.23961 0.97398 1.01786 0.98036 1.22356 0.82602 0.97993 0.93106 0.86613 1.45950 1.19878 1.24097 1.48420 1.18541 0.82912 0.84701 0.77222 1.90645 1.79354 1.22960 1.52140 1.18947 0.97924 0.99333 1.12588 1.20398 0.95661 0.93397 0.96087 1.20700 0.97936 1.02227 1.05868 1.17856 0.91409 0.92150 0.88272 1.19756 0.96520 0.91245 1.37688 0.88579 1.26369 0.98706 0.98516 0.90468 1.69608 1.28964 1.10934 1.31392 0.86225 0.82074 0.78039 0.79492 1.19296 1.21515 1.16372 1.20744 0.98741 0.98811 1.05771 1.20461 0.92450 0.97170 0.93555 1.22528 0.94514 0.96928 0.95579 1.21596 1.01738 0.98432 0.97181 1.21609 1.02376 0.94036 1.01184 0.94103 0.94033 0.89604 0.89084 0.90480 0.76732 0.88960 0.87894 0.89853 0.87642 0.87533 0.92439 0.92903 0.91223 0.92020 0.91796 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.34 16 2 O -0.36 -4.02 9.17 -35.23 -0.32 -4.34 16 3 C 0.07 0.75 3.79 -25.92 -0.10 0.66 16 4 H 0.08 0.65 7.83 -51.92 -0.41 0.24 16 5 C -0.17 -2.08 7.36 -25.92 -0.19 -2.27 16 6 C 0.15 2.05 3.63 -67.12 -0.24 1.80 16 7 H 0.12 1.94 7.42 -51.93 -0.39 1.55 16 8 N -0.73 -11.64 5.17 -54.02 -0.28 -11.92 16 9 C 0.57 11.65 7.76 -12.42 -0.10 11.55 16 10 O -0.57 -13.19 15.92 5.30 0.08 -13.11 16 11 C -0.28 -6.11 5.89 -104.73 -0.62 -6.73 16 12 C -0.04 -0.75 9.47 -39.61 -0.38 -1.12 16 13 C -0.25 -5.63 7.11 -39.27 -0.28 -5.91 16 14 C 0.11 2.60 5.11 -106.80 -0.55 2.05 16 15 C -0.43 -10.84 9.56 -37.75 -0.36 -11.20 16 16 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 17 C 0.08 2.00 5.40 -17.31 -0.09 1.91 16 18 N -0.79 -19.54 13.92 55.56 0.77 -18.77 16 19 Si 0.92 19.39 24.52 -169.99 -4.17 15.22 16 20 H -0.27 -5.40 6.71 56.52 0.38 -5.02 16 21 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.24 -5.29 6.87 56.52 0.39 -4.90 16 23 C -0.22 -5.11 9.73 -39.27 -0.38 -5.49 16 24 C -0.02 -0.38 9.52 -39.61 -0.38 -0.76 16 25 C -0.09 -1.03 1.35 -153.70 -0.21 -1.24 16 26 C -0.13 -1.43 9.04 37.15 0.34 -1.10 16 27 C -0.13 -1.24 8.05 37.16 0.30 -0.95 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 1.01 7.66 -51.92 -0.40 0.61 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 5.53 4.66 -40.82 -0.19 5.34 16 34 H 0.09 1.55 6.37 -52.49 -0.33 1.22 16 35 H 0.10 2.28 4.73 -52.49 -0.25 2.03 16 36 H 0.29 6.47 8.29 -40.82 -0.34 6.13 16 37 H 0.11 2.28 8.06 -52.48 -0.42 1.86 16 38 H 0.11 2.30 7.63 -52.49 -0.40 1.90 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.81 6.96 -51.93 -0.36 0.45 16 42 H 0.06 0.52 7.35 -51.93 -0.38 0.14 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.67 7.10 -51.93 -0.37 0.30 16 LS Contribution 352.12 15.07 5.31 5.31 Total: -1.00 -28.58 352.12 -7.19 -35.78 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.45 Total: 9.29 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.14 Total: -17.47 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.49 Total: -30.68 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.24 Total: -17.45 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.17 Total: 15.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.58 -7.19 -35.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340308860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.233 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds