Wall clock time and date at job start Tue Mar 31 2020 07:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00090 * 2 1 4 4 H 1.09008 * 112.85049 * 18.80279 * 3 2 1 5 5 C 1.53778 * 113.61190 * 247.49774 * 3 2 1 6 6 C 1.53780 * 87.08168 * 270.87931 * 5 3 2 7 7 H 1.08996 * 113.68992 * 89.12656 * 6 5 3 8 8 N 1.46497 * 113.61676 * 220.01713 * 6 5 3 9 9 C 1.34776 * 120.00133 * 252.22511 * 8 6 5 10 10 O 1.21580 * 120.00098 * 0.27152 * 9 8 6 11 11 C 1.47646 * 119.99732 * 180.27787 * 9 8 6 12 12 C 1.40009 * 119.89614 * 359.72233 * 11 9 8 13 13 C 1.36320 * 120.10574 * 179.71768 * 12 11 9 14 14 C 1.40896 * 119.88861 * 0.58178 * 13 12 11 15 15 C 1.41107 * 120.10296 * 179.71703 * 14 13 12 16 16 H 1.08001 * 120.00056 * 150.12623 * 15 14 13 17 17 C 1.40231 * 119.99995 * 330.13572 * 15 14 13 18 18 N 1.30643 * 120.00215 * 161.75065 * 17 15 14 19 19 Si 1.86800 * 119.99786 * 341.74730 * 17 15 14 20 20 H 1.48500 * 109.47118 * 95.41440 * 19 17 15 21 21 H 1.48500 * 109.46955 * 215.41637 * 19 17 15 22 22 H 1.48499 * 109.47295 * 335.41245 * 19 17 15 23 23 C 1.40884 * 119.79246 * 359.69018 * 14 13 12 24 24 C 1.36318 * 119.89441 * 0.02562 * 23 14 13 25 25 C 1.53775 * 113.61656 * 149.99848 * 3 2 1 26 26 C 1.52995 * 113.61642 * 334.56489 * 25 3 2 27 27 C 1.53003 * 113.69199 * 203.67150 * 25 3 2 28 28 H 1.09004 * 109.47521 * 299.99989 * 1 2 3 29 29 H 1.08995 * 109.47213 * 59.99940 * 1 2 3 30 30 H 1.09000 * 109.47445 * 180.02562 * 1 2 3 31 31 H 1.09008 * 113.61241 * 156.33083 * 5 3 2 32 32 H 1.09000 * 113.61614 * 25.43355 * 5 3 2 33 33 H 0.97003 * 119.99860 * 72.50231 * 8 6 5 34 34 H 1.07999 * 119.95071 * 0.02562 * 12 11 9 35 35 H 1.07993 * 120.05594 * 180.29699 * 13 12 11 36 36 H 0.97001 * 120.00217 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.05314 * 180.02562 * 23 14 13 38 38 H 1.08001 * 119.94917 * 179.97438 * 24 23 14 39 39 H 1.08997 * 109.47262 * 157.49375 * 26 25 3 40 40 H 1.09003 * 109.47420 * 277.49744 * 26 25 3 41 41 H 1.08998 * 109.46773 * 37.49743 * 26 25 3 42 42 H 1.08997 * 109.47079 * 322.47192 * 27 25 3 43 43 H 1.09007 * 109.47035 * 82.46596 * 27 25 3 44 44 H 1.08997 * 109.47487 * 202.46553 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 0.3238 5 6 2.7534 1.6487 -1.3018 6 6 4.0061 1.0330 -0.6565 7 1 4.1098 -0.0372 -0.8353 8 7 5.2363 1.7781 -0.9352 9 6 6.1547 1.2705 -1.7810 10 8 5.9599 0.1965 -2.3166 11 6 7.3973 2.0186 -2.0570 12 6 7.6167 3.2578 -1.4434 13 6 8.7650 3.9495 -1.6908 14 6 9.7263 3.4211 -2.5750 15 6 10.9139 4.1360 -2.8389 16 1 11.8213 3.6041 -3.0842 17 6 10.9160 5.5372 -2.7825 18 7 12.0450 6.1847 -2.6695 19 14 9.3044 6.4778 -2.8691 20 1 8.8363 6.7853 -1.4938 21 1 9.5100 7.7442 -3.6168 22 1 8.2858 5.6516 -3.5655 23 6 9.4984 2.1764 -3.1944 24 6 8.3496 1.4893 -2.9364 25 6 3.3755 1.3719 0.7045 26 6 3.5741 0.2826 1.7603 27 6 3.7359 2.7680 1.2163 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 2.8388 2.7197 -1.4863 32 1 2.3926 1.0962 -2.1693 33 1 5.3918 2.6349 -0.5078 34 1 6.8773 3.6641 -0.7693 35 1 8.9356 4.9030 -1.2134 36 1 12.0465 7.1540 -2.6309 37 1 10.2326 1.7672 -3.8726 38 1 8.1738 0.5353 -3.4110 39 1 4.6401 0.1267 1.9255 40 1 3.1030 0.5909 2.6937 41 1 3.1205 -0.6461 1.4139 42 1 3.3915 3.5166 0.5028 43 1 3.2557 2.9368 2.1802 44 1 4.8171 2.8453 1.3305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340308860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:01 Heat of formation + Delta-G solvation = -67.324092 kcal Electronic energy + Delta-G solvation = -24629.005984 eV Core-core repulsion = 21124.704491 eV Total energy + Delta-G solvation = -3504.301493 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.89 seconds Orbital eigenvalues (eV) -41.74538 -40.35901 -38.94684 -37.40586 -35.66727 -34.41377 -32.46177 -31.73330 -31.37796 -28.50507 -28.01064 -27.31481 -25.34007 -23.53884 -23.28260 -23.10555 -21.29817 -19.95501 -19.47306 -18.53639 -17.79862 -17.32960 -16.56348 -16.49560 -16.16210 -15.80721 -15.68039 -15.49521 -15.36406 -14.84718 -14.57893 -14.41539 -14.30924 -13.99097 -13.97494 -13.63849 -13.27868 -13.02670 -13.01803 -12.78879 -12.69495 -12.60666 -12.39613 -12.20438 -11.98438 -11.87316 -11.67158 -11.54640 -11.16993 -11.06344 -10.69805 -10.38968 -9.96174 -9.71452 -9.52358 -9.03541 -6.63177 0.26153 0.88506 1.25543 1.39583 1.50396 1.97086 2.11461 2.38011 2.68020 2.69597 3.39461 3.46891 3.54553 3.85091 3.98272 4.12200 4.16247 4.24720 4.26418 4.32924 4.51428 4.56517 4.61003 4.65945 4.73505 4.77846 4.84338 4.88623 4.91509 4.94752 4.99689 5.01516 5.09983 5.13976 5.16736 5.38055 5.46461 5.46606 5.58434 5.64827 5.77758 5.82444 6.10956 6.25171 6.31740 6.59470 6.67132 6.72481 7.42131 8.02485 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025078 B = 0.003274 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.266593 B = 8551.101603 C = 9044.410009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.389 6.389 3 C 0.083 3.917 4 H 0.106 0.894 5 C -0.170 4.170 6 C 0.126 3.874 7 H 0.082 0.918 8 N -0.710 5.710 9 C 0.570 3.430 10 O -0.603 6.603 11 C -0.282 4.282 12 C -0.027 4.027 13 C -0.257 4.257 14 C 0.095 3.905 15 C -0.463 4.463 16 H 0.064 0.936 17 C 0.049 3.951 18 N -0.823 5.823 19 Si 0.967 3.033 20 H -0.243 1.243 21 H -0.275 1.275 22 H -0.253 1.253 23 C -0.233 4.233 24 C -0.026 4.026 25 C -0.084 4.084 26 C -0.131 4.131 27 C -0.136 4.136 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.409 0.591 34 H 0.138 0.862 35 H 0.113 0.887 36 H 0.301 0.699 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.966 -0.996 9.392 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.308 6.308 3 C 0.024 3.976 4 H 0.124 0.876 5 C -0.209 4.209 6 C 0.021 3.979 7 H 0.100 0.900 8 N -0.362 5.362 9 C 0.363 3.637 10 O -0.487 6.487 11 C -0.286 4.286 12 C -0.045 4.045 13 C -0.275 4.275 14 C 0.091 3.909 15 C -0.490 4.490 16 H 0.082 0.918 17 C -0.169 4.169 18 N -0.447 5.447 19 Si 0.789 3.211 20 H -0.168 1.168 21 H -0.202 1.202 22 H -0.177 1.177 23 C -0.252 4.252 24 C -0.045 4.045 25 C -0.085 4.085 26 C -0.188 4.188 27 C -0.193 4.193 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.248 0.752 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.779 -1.692 9.051 23.645 hybrid contribution 0.336 0.580 -0.372 0.767 sum -21.442 -1.112 8.679 23.159 Atomic orbital electron populations 1.22994 0.79389 1.03720 1.00988 1.87866 1.21427 1.27016 1.94471 1.22995 0.94026 0.85635 0.94935 0.87614 1.23972 0.96158 1.02299 0.98422 1.22557 0.82377 0.96305 0.96623 0.89963 1.45792 1.19477 1.24317 1.46609 1.18429 0.83252 0.84188 0.77804 1.90637 1.80023 1.24395 1.53686 1.19285 0.98068 0.99732 1.11521 1.20744 0.95764 0.92317 0.95724 1.20869 0.98204 1.02921 1.05553 1.18017 0.91660 0.92437 0.88762 1.19707 0.96167 0.92302 1.40865 0.91808 1.27038 1.01578 0.98578 0.89730 1.69617 1.30521 1.11855 1.32705 0.85465 0.78073 0.76998 0.80606 1.16774 1.20163 1.17685 1.20866 0.99256 0.98960 1.06161 1.20602 0.92527 0.97371 0.94036 1.22532 0.94214 0.98104 0.93658 1.21577 1.01039 0.98083 0.98130 1.21670 1.02348 0.92692 1.02611 0.92373 0.93428 0.88880 0.87429 0.91987 0.75217 0.84413 0.86915 0.88757 0.87514 0.87340 0.93596 0.90817 0.92552 0.90694 0.89726 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.85 113.37 1.23 1.54 16 2 O -0.39 -7.79 9.17 -148.98 -1.37 -9.16 16 3 C 0.08 1.44 3.79 31.12 0.12 1.56 16 4 H 0.11 1.26 7.83 -2.38 -0.02 1.24 16 5 C -0.17 -3.66 7.36 31.12 0.23 -3.43 16 6 C 0.13 3.36 3.63 45.52 0.17 3.52 16 7 H 0.08 2.78 7.42 -2.39 -0.02 2.76 16 8 N -0.71 -20.91 5.17 -443.10 -2.29 -23.20 16 9 C 0.57 22.50 7.76 86.73 0.67 23.18 16 10 O -0.60 -27.99 15.92 -3.97 -0.06 -28.06 16 11 C -0.28 -11.75 5.89 -19.93 -0.12 -11.86 16 12 C -0.03 -1.02 9.47 22.25 0.21 -0.81 16 13 C -0.26 -11.20 7.11 22.47 0.16 -11.04 16 14 C 0.09 4.65 5.11 -21.28 -0.11 4.54 16 15 C -0.46 -24.53 9.56 23.46 0.22 -24.31 16 16 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 17 C 0.05 2.45 5.40 85.35 0.46 2.91 16 18 N -0.82 -41.67 13.92 21.87 0.30 -41.37 16 19 Si 0.97 38.67 24.52 68.60 1.68 40.36 16 20 H -0.24 -8.76 6.71 99.48 0.67 -8.10 16 21 H -0.28 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.25 -10.56 6.87 99.48 0.68 -9.88 16 23 C -0.23 -11.01 9.73 22.47 0.22 -10.79 16 24 C -0.03 -1.18 9.52 22.25 0.21 -0.96 16 25 C -0.08 -1.58 1.35 -51.66 -0.07 -1.65 16 26 C -0.13 -2.56 9.04 71.98 0.65 -1.91 16 27 C -0.14 -1.88 8.05 71.98 0.58 -1.30 16 28 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.11 1.96 7.66 -2.38 -0.02 1.95 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.41 9.82 4.66 -92.71 -0.43 9.38 16 34 H 0.14 3.94 6.37 -2.91 -0.02 3.92 16 35 H 0.11 4.69 4.73 -2.91 -0.01 4.67 16 36 H 0.30 13.47 8.29 -92.71 -0.77 12.70 16 37 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.11 4.77 7.63 -2.91 -0.02 4.75 16 39 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 1.24 6.96 -2.39 -0.02 1.23 16 42 H 0.07 0.86 7.35 -2.39 -0.02 0.85 16 43 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.06 0.97 7.10 -2.39 -0.02 0.95 16 Total: -1.00 -64.17 352.12 3.62 -60.56 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.51 Total: 31.68 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 4.84 Total: -30.81 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -1.99 Total: -64.57 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.43 Total: -37.21 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.68 Total: 40.36 kcal Total: -64.17 3.62 -60.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340308860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.768 kcal (2) G-P(sol) polarization free energy of solvation -64.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.89 seconds