Wall clock time and date at job start Tue Mar 31 2020 09:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46931 * 2 1 4 4 N 1.46505 * 109.53931 * 306.19383 * 3 2 1 5 5 C 1.34775 * 119.99577 * 297.01412 * 4 3 2 6 6 O 1.21548 * 120.00354 * 5.23477 * 5 4 3 7 7 C 1.47895 * 119.99528 * 185.23387 * 5 4 3 8 8 C 1.39916 * 120.02338 * 359.97438 * 7 5 4 9 9 C 1.38327 * 120.35535 * 180.02562 * 8 7 5 10 10 C 1.37757 * 120.41400 * 359.97438 * 9 8 7 11 11 C 1.40750 * 120.03763 * 359.97438 * 10 9 8 12 12 C 1.41433 * 120.17958 * 179.74585 * 11 10 9 13 13 H 1.08009 * 119.99702 * 327.09316 * 12 11 10 14 14 C 1.39935 * 120.00309 * 147.09920 * 12 11 10 15 15 N 1.30827 * 119.99992 * 359.49203 * 14 12 11 16 16 Si 1.86801 * 120.00059 * 179.50085 * 14 12 11 17 17 H 1.48494 * 109.47775 * 89.99415 * 16 14 12 18 18 H 1.48506 * 109.46935 * 209.99748 * 16 14 12 19 19 H 1.48507 * 109.46839 * 329.99189 * 16 14 12 20 20 C 1.38993 * 120.01995 * 179.97438 * 7 5 4 21 21 C 1.53179 * 109.54252 * 66.36601 * 3 2 1 22 22 C 1.53284 * 109.06163 * 176.85331 * 21 3 2 23 23 O 1.42902 * 109.46038 * 302.44915 * 22 21 3 24 24 C 1.42905 * 114.10099 * 61.15720 * 23 22 21 25 25 C 1.53095 * 109.41256 * 298.84390 * 24 23 22 26 26 H 1.09003 * 109.46619 * 183.68388 * 1 2 3 27 27 H 1.08995 * 109.47370 * 303.68587 * 1 2 3 28 28 H 1.08997 * 109.46943 * 63.68718 * 1 2 3 29 29 H 1.08995 * 109.47505 * 240.00029 * 2 1 3 30 30 H 1.08998 * 109.46763 * 119.99465 * 2 1 3 31 31 H 0.97001 * 119.99963 * 117.02599 * 4 3 2 32 32 H 1.07998 * 119.82441 * 359.97438 * 8 7 5 33 33 H 1.08004 * 119.79865 * 179.97438 * 9 8 7 34 34 H 1.08000 * 119.98315 * 179.97438 * 10 9 8 35 35 H 0.96989 * 120.00111 * 180.02562 * 15 14 12 36 36 H 1.07993 * 120.20642 * 0.04093 * 20 7 5 37 37 H 1.08995 * 109.52491 * 296.84378 * 21 3 2 38 38 H 1.09004 * 109.51982 * 57.03594 * 21 3 2 39 39 H 1.08998 * 109.45799 * 182.45448 * 22 21 3 40 40 H 1.08996 * 109.46673 * 62.44978 * 22 21 3 41 41 H 1.08995 * 109.48026 * 178.85950 * 24 23 22 42 42 H 1.08992 * 109.48805 * 58.82697 * 24 23 22 43 43 H 1.09005 * 109.52175 * 297.69860 * 25 24 23 44 44 H 1.09004 * 109.57154 * 177.54414 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4346 2.1763 -1.1142 5 6 1.6822 1.7978 -2.3839 6 8 2.3291 0.7925 -2.6033 7 6 1.1666 2.6059 -3.5101 8 6 0.4214 3.7630 -3.2581 9 6 -0.0645 4.5236 -4.3063 10 6 0.1797 4.1515 -5.6099 11 6 0.9283 2.9912 -5.8829 12 6 1.1763 2.6034 -7.2203 13 1 0.4410 2.8033 -7.9857 14 6 2.3743 1.9606 -7.5517 15 7 3.2692 1.7272 -6.6263 16 14 2.6958 1.4358 -9.3154 17 1 3.3745 2.5376 -10.0439 18 1 3.5624 0.2299 -9.3229 19 1 1.4060 1.1227 -9.9816 20 6 1.4221 2.2164 -4.8197 21 6 1.6652 2.1185 1.3225 22 6 2.2486 3.5358 1.3432 23 8 3.6652 3.4701 1.1670 24 6 4.0726 2.8891 -0.0735 25 6 3.5642 1.4472 -0.1513 26 1 -0.3633 -1.0256 0.0660 27 1 -0.3634 0.5699 0.8551 28 1 -0.3633 0.4555 -0.9212 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.8558 2.9345 -0.9382 32 1 0.2239 4.0635 -2.2397 33 1 -0.6391 5.4149 -4.1014 34 1 -0.2034 4.7503 -6.4230 35 1 4.0997 1.2820 -6.8561 36 1 1.9962 1.3237 -5.0188 37 1 0.5800 2.1677 1.4117 38 1 2.0743 1.5443 2.1538 39 1 2.0229 4.0075 2.2996 40 1 1.8087 4.1216 0.5362 41 1 5.1606 2.8950 -0.1376 42 1 3.6566 3.4662 -0.8992 43 1 4.0116 0.8594 0.6504 44 1 3.8360 1.0156 -1.1146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342054397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:06 Heat of formation + Delta-G solvation = -91.468121 kcal Electronic energy + Delta-G solvation = -25728.230558 eV Core-core repulsion = 22222.882101 eV Total energy + Delta-G solvation = -3505.348456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.84532 -39.87980 -38.69403 -36.84911 -35.56876 -33.63484 -32.27651 -31.76951 -31.35791 -31.16258 -27.23627 -26.33590 -24.86774 -24.30046 -22.80259 -22.60552 -21.43893 -20.20906 -19.52686 -18.06277 -17.24095 -17.00667 -16.94765 -16.54788 -16.43673 -16.17878 -15.69334 -15.43328 -15.05535 -14.91045 -14.58915 -14.37085 -14.24885 -14.03530 -13.54733 -13.47279 -13.27027 -12.89938 -12.83427 -12.79430 -12.52972 -12.44539 -12.25244 -12.18185 -12.03712 -11.85630 -11.52623 -11.45629 -11.29078 -11.13530 -10.66121 -10.40624 -9.94437 -9.43498 -9.29528 -8.54327 -6.43348 0.39800 1.02113 1.36192 1.45596 1.50467 2.14917 2.21513 2.27474 2.84319 2.93295 3.55065 3.66501 3.77097 3.82896 4.00556 4.07313 4.24227 4.34924 4.38621 4.44273 4.50599 4.56079 4.58654 4.65017 4.78400 4.84275 4.90506 4.93562 5.03036 5.08810 5.10189 5.12280 5.14066 5.19631 5.28242 5.34765 5.41820 5.53902 5.68687 5.86405 5.91969 6.08751 6.21990 6.30351 6.54928 6.74694 6.91162 6.95712 7.41806 8.38762 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.004162 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.333957 B = 6725.679474 C = 6989.732307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.177 3.823 4 N -0.705 5.705 5 C 0.567 3.433 6 O -0.573 6.573 7 C -0.146 4.146 8 C -0.186 4.186 9 C -0.104 4.104 10 C -0.207 4.207 11 C 0.062 3.938 12 C -0.501 4.501 13 H 0.080 0.920 14 C 0.024 3.976 15 N -0.842 5.842 16 Si 0.987 3.013 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.255 1.255 20 C -0.118 4.118 21 C -0.147 4.147 22 C 0.051 3.949 23 O -0.392 6.392 24 C 0.069 3.931 25 C -0.165 4.165 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.407 0.593 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.282 0.718 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.033 0.967 43 H 0.090 0.910 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 2.128 16.001 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C 0.092 3.908 4 N -0.359 5.359 5 C 0.357 3.643 6 O -0.453 6.453 7 C -0.149 4.149 8 C -0.205 4.205 9 C -0.121 4.121 10 C -0.226 4.226 11 C 0.060 3.940 12 C -0.532 4.532 13 H 0.098 0.902 14 C -0.188 4.188 15 N -0.470 5.470 16 Si 0.808 3.192 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.179 1.179 20 C -0.138 4.138 21 C -0.184 4.184 22 C -0.025 4.025 23 O -0.311 6.311 24 C -0.008 4.008 25 C -0.203 4.203 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.245 0.755 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.052 0.948 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.914 1.391 16.051 16.373 hybrid contribution 0.145 -0.275 -1.511 1.542 sum -2.769 1.116 14.540 14.844 Atomic orbital electron populations 1.21687 0.94672 1.01871 1.01667 1.21884 0.97176 0.95555 1.02358 1.20458 0.91653 0.92354 0.86346 1.45875 1.51043 1.34809 1.04129 1.18523 0.78550 0.83689 0.83576 1.90636 1.41805 1.27321 1.85545 1.19930 1.03609 0.98361 0.92991 1.20909 1.03974 0.96616 0.99018 1.20940 0.99607 0.99568 0.92028 1.21524 1.06691 0.97523 0.96895 1.17989 0.91309 0.90963 0.93778 1.19826 1.03196 1.35576 0.94565 0.90183 1.26809 0.95111 0.93006 1.03864 1.69867 1.07514 1.33242 1.36372 0.85128 0.79224 0.78356 0.76532 1.18532 1.19880 1.17856 1.21626 1.01085 0.99977 0.91154 1.22536 1.03531 0.97167 0.95198 1.22874 0.80462 0.95950 1.03260 1.87890 1.23572 1.81845 1.37829 1.22414 1.00181 0.92319 0.85893 1.22533 0.96218 0.98220 1.03364 0.92587 0.90136 0.94954 0.93622 0.89521 0.75499 0.84698 0.84360 0.87355 0.90760 0.87745 0.87700 0.88081 0.85976 0.93164 0.88616 0.94837 0.89186 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.48 71.98 0.68 -2.57 16 2 C -0.13 -3.41 4.71 30.60 0.14 -3.26 16 3 C 0.18 4.43 0.35 3.72 0.00 4.44 16 4 N -0.71 -20.76 3.20 -425.17 -1.36 -22.12 16 5 C 0.57 23.61 7.04 86.80 0.61 24.22 16 6 O -0.57 -28.06 12.65 -3.87 -0.05 -28.11 16 7 C -0.15 -6.72 5.87 -20.13 -0.12 -6.83 16 8 C -0.19 -7.07 9.54 22.70 0.22 -6.85 16 9 C -0.10 -4.01 10.01 22.18 0.22 -3.79 16 10 C -0.21 -9.58 9.78 22.77 0.22 -9.36 16 11 C 0.06 3.35 5.54 -21.32 -0.12 3.23 16 12 C -0.50 -27.58 9.05 23.47 0.21 -27.37 16 13 H 0.08 4.17 7.85 -2.91 -0.02 4.15 16 14 C 0.02 1.28 5.38 85.25 0.46 1.74 16 15 N -0.84 -47.74 10.67 21.82 0.23 -47.50 16 16 Si 0.99 40.41 29.56 68.60 2.03 42.44 16 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 20 C -0.12 -6.50 8.20 23.01 0.19 -6.31 16 21 C -0.15 -2.41 4.68 30.75 0.14 -2.27 16 22 C 0.05 0.90 6.67 72.08 0.48 1.38 16 23 O -0.39 -9.61 10.77 -148.98 -1.60 -11.21 16 24 C 0.07 1.90 6.68 72.01 0.48 2.38 16 25 C -0.16 -4.70 4.72 30.68 0.14 -4.56 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.34 6.53 -2.39 -0.02 1.32 16 28 H 0.03 0.90 7.47 -2.39 -0.02 0.88 16 29 H 0.04 1.59 6.41 -2.39 -0.02 1.57 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.41 9.87 5.67 -92.71 -0.53 9.34 16 32 H 0.14 3.83 6.39 -2.91 -0.02 3.81 16 33 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 35 H 0.28 14.83 8.30 -92.72 -0.77 14.06 16 36 H 0.10 6.49 5.76 -2.91 -0.02 6.48 16 37 H 0.10 1.28 6.69 -2.39 -0.02 1.26 16 38 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.12 1.48 8.14 -2.39 -0.02 1.47 16 40 H 0.05 0.90 7.16 -2.39 -0.02 0.88 16 41 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.03 1.06 7.75 -2.39 -0.02 1.04 16 43 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 44 H 0.06 2.26 6.08 -2.39 -0.01 2.25 16 Total: -1.00 -68.69 342.88 3.71 -64.98 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 0.49 Total: 37.31 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 3.97 Total: -35.79 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -1.13 Total: -69.62 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -1.65 Total: -39.32 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -68.69 3.71 -64.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342054397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.490 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds