Wall clock time and date at job start Tue Mar 31 2020 07:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.54591 * 2 1 4 4 N 1.46509 * 109.46756 * 59.99771 * 3 2 1 5 5 C 1.34770 * 119.99586 * 180.02562 * 4 3 2 6 6 O 1.21548 * 120.00647 * 0.02562 * 5 4 3 7 7 C 1.47886 * 119.99843 * 179.97438 * 5 4 3 8 8 C 1.39918 * 120.02440 * 359.73239 * 7 5 4 9 9 C 1.38331 * 120.36095 * 179.71291 * 8 7 5 10 10 C 1.37749 * 120.40915 * 0.55882 * 9 8 7 11 11 C 1.40750 * 120.03955 * 359.71896 * 10 9 8 12 12 C 1.41440 * 120.17815 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00120 * 334.92995 * 12 11 10 14 14 C 1.39937 * 119.99910 * 154.92724 * 12 11 10 15 15 N 1.30829 * 120.00056 * 342.58723 * 14 12 11 16 16 Si 1.86801 * 119.99915 * 162.58836 * 14 12 11 17 17 H 1.48502 * 109.47085 * 90.00113 * 16 14 12 18 18 H 1.48502 * 109.46900 * 210.00032 * 16 14 12 19 19 H 1.48503 * 109.46930 * 330.00019 * 16 14 12 20 20 C 1.38999 * 120.02637 * 179.97438 * 7 5 4 21 21 C 1.53172 * 109.54208 * 120.17761 * 2 1 3 22 22 C 1.53102 * 109.15757 * 63.06884 * 21 2 1 23 23 O 1.42896 * 109.49232 * 57.47096 * 22 21 2 24 24 C 1.42903 * 114.09788 * 298.89250 * 23 22 21 25 25 C 1.53092 * 109.41412 * 61.15670 * 24 23 22 26 26 H 1.09000 * 109.46927 * 60.00107 * 1 2 3 27 27 H 1.08998 * 109.47240 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47486 * 300.00041 * 1 2 3 29 29 H 1.09001 * 109.46884 * 300.00293 * 3 2 1 30 30 H 1.08997 * 109.47259 * 179.97438 * 3 2 1 31 31 H 0.97002 * 119.99886 * 0.27619 * 4 3 2 32 32 H 1.07999 * 119.82135 * 359.97025 * 8 7 5 33 33 H 1.07999 * 119.79787 * 180.25407 * 9 8 7 34 34 H 1.07998 * 119.98217 * 179.74251 * 10 9 8 35 35 H 0.97001 * 119.99771 * 180.02562 * 15 14 12 36 36 H 1.07999 * 120.20211 * 359.97438 * 20 7 5 37 37 H 1.09005 * 109.52483 * 182.87907 * 21 2 1 38 38 H 1.08999 * 109.52347 * 303.07102 * 21 2 1 39 39 H 1.09010 * 109.40380 * 297.48909 * 22 21 2 40 40 H 1.09000 * 109.49436 * 177.50902 * 22 21 2 41 41 H 1.09003 * 109.48090 * 301.17315 * 24 23 22 42 42 H 1.09001 * 109.49159 * 181.14454 * 24 23 22 43 43 H 1.09005 * 109.52407 * 182.48861 * 25 24 23 44 44 H 1.08998 * 109.57523 * 62.32960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0419 1.4418 0.0000 4 7 1.5543 2.1331 1.1962 5 6 1.8811 3.4231 1.4092 6 8 2.5800 4.0132 0.6088 7 6 1.3886 4.1210 2.6164 8 6 0.5786 3.4442 3.5349 9 6 0.1189 4.0885 4.6694 10 6 0.4434 5.4068 4.9024 11 6 1.2523 6.1057 3.9868 12 6 1.5878 7.4592 4.2234 13 1 0.9461 8.0756 4.8355 14 6 2.7513 7.9997 3.6645 15 7 3.6930 7.2072 3.2207 16 14 2.9599 9.8526 3.5520 17 1 3.6182 10.3524 4.7858 18 1 3.7996 10.1855 2.3733 19 1 1.6278 10.4928 3.4075 20 6 1.7257 5.4513 2.8369 21 6 2.0423 -0.7256 1.2479 22 6 1.5931 -2.1884 1.1984 23 8 2.0771 -2.7956 -0.0012 24 6 1.5913 -2.1878 -1.1998 25 6 2.0425 -0.7256 -1.2479 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6791 1.9561 -0.8900 30 1 3.1318 1.4404 0.0005 31 1 0.9993 1.6611 1.8367 32 1 0.3143 2.4119 3.3593 33 1 -0.5024 3.5562 5.3743 34 1 0.0773 5.9043 5.7883 35 1 4.4997 7.5819 2.8336 36 1 2.3478 5.9787 2.1289 37 1 3.1312 -0.6811 1.2739 38 1 1.6359 -0.2482 2.1395 39 1 0.5041 -2.2336 1.2149 40 1 1.9921 -2.7208 2.0618 41 1 0.5023 -2.2329 -1.2147 42 1 1.9890 -2.7195 -2.0642 43 1 1.6360 -0.2481 -2.1395 44 1 3.1312 -0.6800 -1.2745 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346987163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:55 Heat of formation + Delta-G solvation = -81.238588 kcal Electronic energy + Delta-G solvation = -24682.935414 eV Core-core repulsion = 21178.030543 eV Total energy + Delta-G solvation = -3504.904871 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.39180 -38.98193 -37.09012 -36.01978 -33.79234 -33.01687 -31.35639 -30.22804 -29.45024 -28.08118 -26.97525 -25.27533 -23.92200 -23.27071 -21.82793 -20.92627 -19.56638 -18.83992 -17.82765 -16.61134 -16.23242 -15.85609 -15.59417 -15.32641 -15.03619 -14.91030 -14.64667 -14.28200 -14.00885 -13.65826 -13.39638 -13.15579 -12.65378 -12.62588 -12.48598 -12.27599 -12.16118 -11.65728 -11.57529 -11.50347 -11.24840 -11.14808 -11.06590 -10.77560 -10.65091 -10.50565 -10.42498 -10.04636 -9.71295 -9.63226 -9.22259 -9.02108 -8.64522 -7.63948 -7.53231 -6.80894 -4.42629 2.20446 2.80248 3.07146 3.09907 3.15425 3.62476 3.70975 3.86533 3.91759 4.40390 4.43956 4.52751 4.63812 4.79412 4.96831 4.98903 5.06289 5.33508 5.35366 5.41160 5.51024 5.56778 5.58259 5.62605 5.70109 5.79273 5.82504 5.87856 5.94778 6.03279 6.10954 6.20636 6.24821 6.70569 6.86088 6.96629 6.97738 7.00595 7.19995 7.36898 7.68509 7.74645 7.91197 8.08676 8.18145 8.49392 8.79207 8.82229 8.95558 10.13835 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027282 B = 0.003081 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.082461 B = 9086.107909 C = 9707.761844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.074 4.074 3 C 0.134 3.866 4 N -0.735 5.735 5 C 0.563 3.437 6 O -0.547 6.547 7 C -0.128 4.128 8 C -0.219 4.219 9 C -0.097 4.097 10 C -0.212 4.212 11 C 0.099 3.901 12 C -0.460 4.460 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.783 5.783 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.092 4.092 21 C -0.147 4.147 22 C 0.060 3.940 23 O -0.384 6.384 24 C 0.061 3.939 25 C -0.143 4.143 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.285 0.715 36 H 0.133 0.867 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 -15.190 -5.953 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.074 4.074 3 C 0.010 3.990 4 N -0.390 5.390 5 C 0.353 3.647 6 O -0.425 6.425 7 C -0.131 4.131 8 C -0.239 4.239 9 C -0.116 4.116 10 C -0.232 4.232 11 C 0.097 3.903 12 C -0.489 4.489 13 H 0.099 0.901 14 C -0.146 4.146 15 N -0.407 5.407 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.184 1.184 20 C -0.112 4.112 21 C -0.185 4.185 22 C -0.017 4.017 23 O -0.303 6.303 24 C -0.016 4.016 25 C -0.181 4.181 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.234 0.766 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.151 0.849 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.575 -14.916 -6.650 16.718 hybrid contribution -0.215 0.816 0.322 0.903 sum -3.790 -14.100 -6.328 15.913 Atomic orbital electron populations 1.22002 0.93975 1.01809 1.02796 1.20826 0.96232 0.94626 0.95741 1.21243 0.98989 0.90092 0.88712 1.45977 1.55233 1.12618 1.25126 1.18846 0.79055 0.80660 0.86114 1.90695 1.38149 1.66357 1.47293 1.19478 1.02868 0.95940 0.94814 1.20308 1.07028 0.98085 0.98472 1.20427 0.99658 0.95063 0.96411 1.21097 1.07758 0.94291 1.00070 1.17603 0.89948 0.93102 0.89682 1.19580 1.06067 0.95497 1.27742 0.90088 1.25968 0.94998 1.00713 0.92931 1.69789 1.05222 1.37526 1.28203 0.86286 0.79441 0.82211 0.78688 1.19436 1.19942 1.18384 1.21635 0.99983 0.92104 0.97470 1.22270 1.02407 0.95873 0.97940 1.22622 0.98402 0.93046 0.87586 1.87926 1.71903 1.56614 1.13824 1.22590 0.98394 0.92836 0.87755 1.22183 1.02256 0.96046 0.97635 0.92041 0.92273 0.92021 0.91760 0.91798 0.76607 0.89453 0.88935 0.88619 0.90431 0.84887 0.90595 0.90504 0.92933 0.88881 0.92943 0.88963 0.90474 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.76 37.16 0.29 -1.08 16 2 C -0.07 -0.75 0.53 -154.33 -0.08 -0.83 16 3 C 0.13 1.84 4.58 -4.04 -0.02 1.82 16 4 N -0.73 -11.93 4.94 -61.23 -0.30 -12.23 16 5 C 0.56 12.29 7.77 -12.31 -0.10 12.20 16 6 O -0.55 -13.81 16.33 5.32 0.09 -13.72 16 7 C -0.13 -3.01 5.87 -105.04 -0.62 -3.63 16 8 C -0.22 -4.55 9.55 -38.92 -0.37 -4.92 16 9 C -0.10 -2.06 10.01 -39.73 -0.40 -2.45 16 10 C -0.21 -5.02 9.78 -38.81 -0.38 -5.40 16 11 C 0.10 2.62 5.57 -106.87 -0.59 2.02 16 12 C -0.46 -12.07 9.05 -37.73 -0.34 -12.42 16 13 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 14 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 15 N -0.78 -20.79 10.97 55.55 0.61 -20.18 16 16 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 20 C -0.09 -2.45 8.23 -38.44 -0.32 -2.77 16 21 C -0.15 -1.47 4.70 -26.59 -0.13 -1.60 16 22 C 0.06 0.54 6.56 37.21 0.24 0.79 16 23 O -0.38 -4.02 10.77 -35.23 -0.38 -4.40 16 24 C 0.06 0.51 6.57 37.21 0.24 0.75 16 25 C -0.14 -1.27 4.92 -26.59 -0.13 -1.40 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.47 5.02 -51.93 -0.26 0.21 16 28 H 0.06 0.60 6.87 -51.93 -0.36 0.24 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.40 5.62 4.22 -40.82 -0.17 5.45 16 32 H 0.09 1.49 6.38 -52.49 -0.33 1.15 16 33 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 36 H 0.13 3.85 5.76 -52.49 -0.30 3.55 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.77 6.97 -51.93 -0.36 0.40 16 39 H 0.05 0.42 6.61 -51.92 -0.34 0.08 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.39 6.60 -51.93 -0.34 0.05 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -30.15 346.40 -8.83 -38.98 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.25 Total: 9.75 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.78 Total: -17.15 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.31 Total: -32.41 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.29 Total: -18.13 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.15 -8.83 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346987163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.261 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds