Wall clock time and date at job start Tue Mar 31 2020 07:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.54591 * 2 1 4 4 N 1.46509 * 109.46756 * 59.99771 * 3 2 1 5 5 C 1.34770 * 119.99586 * 180.02562 * 4 3 2 6 6 O 1.21548 * 120.00647 * 0.02562 * 5 4 3 7 7 C 1.47886 * 119.99843 * 179.97438 * 5 4 3 8 8 C 1.39918 * 120.02440 * 359.73239 * 7 5 4 9 9 C 1.38331 * 120.36095 * 179.71291 * 8 7 5 10 10 C 1.37749 * 120.40915 * 0.55882 * 9 8 7 11 11 C 1.40750 * 120.03955 * 359.71896 * 10 9 8 12 12 C 1.41440 * 120.17815 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00120 * 334.92995 * 12 11 10 14 14 C 1.39937 * 119.99910 * 154.92724 * 12 11 10 15 15 N 1.30829 * 120.00056 * 342.58723 * 14 12 11 16 16 Si 1.86801 * 119.99915 * 162.58836 * 14 12 11 17 17 H 1.48502 * 109.47085 * 90.00113 * 16 14 12 18 18 H 1.48502 * 109.46900 * 210.00032 * 16 14 12 19 19 H 1.48503 * 109.46930 * 330.00019 * 16 14 12 20 20 C 1.38999 * 120.02637 * 179.97438 * 7 5 4 21 21 C 1.53172 * 109.54208 * 120.17761 * 2 1 3 22 22 C 1.53102 * 109.15757 * 63.06884 * 21 2 1 23 23 O 1.42896 * 109.49232 * 57.47096 * 22 21 2 24 24 C 1.42903 * 114.09788 * 298.89250 * 23 22 21 25 25 C 1.53092 * 109.41412 * 61.15670 * 24 23 22 26 26 H 1.09000 * 109.46927 * 60.00107 * 1 2 3 27 27 H 1.08998 * 109.47240 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47486 * 300.00041 * 1 2 3 29 29 H 1.09001 * 109.46884 * 300.00293 * 3 2 1 30 30 H 1.08997 * 109.47259 * 179.97438 * 3 2 1 31 31 H 0.97002 * 119.99886 * 0.27619 * 4 3 2 32 32 H 1.07999 * 119.82135 * 359.97025 * 8 7 5 33 33 H 1.07999 * 119.79787 * 180.25407 * 9 8 7 34 34 H 1.07998 * 119.98217 * 179.74251 * 10 9 8 35 35 H 0.97001 * 119.99771 * 180.02562 * 15 14 12 36 36 H 1.07999 * 120.20211 * 359.97438 * 20 7 5 37 37 H 1.09005 * 109.52483 * 182.87907 * 21 2 1 38 38 H 1.08999 * 109.52347 * 303.07102 * 21 2 1 39 39 H 1.09010 * 109.40380 * 297.48909 * 22 21 2 40 40 H 1.09000 * 109.49436 * 177.50902 * 22 21 2 41 41 H 1.09003 * 109.48090 * 301.17315 * 24 23 22 42 42 H 1.09001 * 109.49159 * 181.14454 * 24 23 22 43 43 H 1.09005 * 109.52407 * 182.48861 * 25 24 23 44 44 H 1.08998 * 109.57523 * 62.32960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0419 1.4418 0.0000 4 7 1.5543 2.1331 1.1962 5 6 1.8811 3.4231 1.4092 6 8 2.5800 4.0132 0.6088 7 6 1.3886 4.1210 2.6164 8 6 0.5786 3.4442 3.5349 9 6 0.1189 4.0885 4.6694 10 6 0.4434 5.4068 4.9024 11 6 1.2523 6.1057 3.9868 12 6 1.5878 7.4592 4.2234 13 1 0.9461 8.0756 4.8355 14 6 2.7513 7.9997 3.6645 15 7 3.6930 7.2072 3.2207 16 14 2.9599 9.8526 3.5520 17 1 3.6182 10.3524 4.7858 18 1 3.7996 10.1855 2.3733 19 1 1.6278 10.4928 3.4075 20 6 1.7257 5.4513 2.8369 21 6 2.0423 -0.7256 1.2479 22 6 1.5931 -2.1884 1.1984 23 8 2.0771 -2.7956 -0.0012 24 6 1.5913 -2.1878 -1.1998 25 6 2.0425 -0.7256 -1.2479 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6791 1.9561 -0.8900 30 1 3.1318 1.4404 0.0005 31 1 0.9993 1.6611 1.8367 32 1 0.3143 2.4119 3.3593 33 1 -0.5024 3.5562 5.3743 34 1 0.0773 5.9043 5.7883 35 1 4.4997 7.5819 2.8336 36 1 2.3478 5.9787 2.1289 37 1 3.1312 -0.6811 1.2739 38 1 1.6359 -0.2482 2.1395 39 1 0.5041 -2.2336 1.2149 40 1 1.9921 -2.7208 2.0618 41 1 0.5023 -2.2329 -1.2147 42 1 1.9890 -2.7195 -2.0642 43 1 1.6360 -0.2481 -2.1395 44 1 3.1312 -0.6800 -1.2745 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346987163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:54 Heat of formation + Delta-G solvation = -99.589156 kcal Electronic energy + Delta-G solvation = -24683.731154 eV Core-core repulsion = 21178.030543 eV Total energy + Delta-G solvation = -3505.700611 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.41797 -40.44704 -38.82559 -37.13718 -35.62964 -34.38845 -32.09586 -31.97321 -31.28360 -28.90723 -28.11635 -27.10243 -24.78993 -24.41062 -23.19152 -22.72116 -21.23280 -19.78077 -19.43432 -18.10340 -17.23709 -17.05880 -16.86084 -16.64833 -16.43520 -16.29323 -15.75727 -15.45274 -15.38194 -15.06567 -14.76858 -14.49890 -14.30394 -14.19100 -13.60761 -13.41576 -13.19215 -12.94897 -12.88804 -12.78515 -12.54977 -12.36438 -12.23291 -12.21369 -12.06505 -11.92271 -11.51993 -11.42804 -11.16160 -11.07379 -10.81085 -10.36027 -10.15978 -9.47410 -9.39021 -8.67261 -6.39089 0.37127 1.00221 1.35656 1.45686 1.51940 2.08954 2.18668 2.23678 2.78203 3.01361 3.53745 3.60624 3.69243 3.73239 4.01304 4.09482 4.18373 4.30326 4.35616 4.41041 4.57164 4.57803 4.63474 4.68402 4.70835 4.79235 4.82720 4.90750 4.96443 5.01012 5.05610 5.08005 5.16165 5.18514 5.24745 5.30481 5.44550 5.45531 5.51618 5.85527 5.91569 6.04576 6.28012 6.30418 6.49796 6.67188 6.87205 6.93957 7.29609 8.29494 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027282 B = 0.003081 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.082461 B = 9086.107909 C = 9707.761844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C 0.132 3.868 4 N -0.708 5.708 5 C 0.558 3.442 6 O -0.592 6.592 7 C -0.139 4.139 8 C -0.197 4.197 9 C -0.094 4.094 10 C -0.217 4.217 11 C 0.067 3.933 12 C -0.498 4.498 13 H 0.084 0.916 14 C 0.029 3.971 15 N -0.826 5.826 16 Si 0.982 3.018 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.255 1.255 20 C -0.131 4.131 21 C -0.148 4.148 22 C 0.061 3.939 23 O -0.403 6.403 24 C 0.060 3.940 25 C -0.142 4.142 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.411 0.589 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.109 0.891 35 H 0.286 0.714 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.511 -17.469 -5.438 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C 0.008 3.992 4 N -0.361 5.361 5 C 0.348 3.652 6 O -0.473 6.473 7 C -0.142 4.142 8 C -0.217 4.217 9 C -0.112 4.112 10 C -0.237 4.237 11 C 0.065 3.935 12 C -0.527 4.527 13 H 0.102 0.898 14 C -0.186 4.186 15 N -0.452 5.452 16 Si 0.803 3.197 17 H -0.181 1.181 18 H -0.198 1.198 19 H -0.178 1.178 20 C -0.152 4.152 21 C -0.185 4.185 22 C -0.015 4.015 23 O -0.323 6.323 24 C -0.016 4.016 25 C -0.180 4.180 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.250 0.750 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.086 0.914 42 H 0.123 0.877 43 H 0.106 0.894 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.662 -17.255 -6.116 19.163 hybrid contribution 0.341 1.304 0.165 1.358 sum -5.321 -15.951 -5.951 17.837 Atomic orbital electron populations 1.22010 0.92590 1.03102 1.02756 1.20769 0.97186 0.91840 0.96718 1.21420 0.98235 0.92276 0.87224 1.45746 1.53858 1.10663 1.25859 1.18768 0.78847 0.82173 0.85392 1.90671 1.40283 1.67802 1.48584 1.19786 1.03047 0.95279 0.96132 1.20823 1.04112 0.99867 0.96854 1.20927 0.99143 0.94116 0.97046 1.21419 1.06761 0.95640 0.99855 1.17947 0.91237 0.93891 0.90404 1.19863 1.07060 0.96289 1.29503 0.89754 1.26865 0.94242 1.05462 0.92036 1.69894 1.05893 1.39577 1.29800 0.85200 0.79477 0.76100 0.78947 1.18132 1.19795 1.17810 1.21434 1.02014 0.93869 0.97846 1.22275 1.01473 0.97005 0.97795 1.22694 0.99346 0.91932 0.87562 1.87911 1.72520 1.57126 1.14696 1.22719 0.99316 0.91991 0.87580 1.22187 1.01672 0.96772 0.97371 0.91966 0.90315 0.92226 0.92286 0.93315 0.74987 0.84697 0.84222 0.87309 0.90359 0.88506 0.92194 0.90205 0.91299 0.88065 0.91440 0.87665 0.89387 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 7.76 71.98 0.56 -1.66 16 2 C -0.06 -1.18 0.53 -52.06 -0.03 -1.20 16 3 C 0.13 3.54 4.58 86.38 0.40 3.93 16 4 N -0.71 -22.08 4.94 -465.92 -2.30 -24.38 16 5 C 0.56 24.69 7.77 86.80 0.67 25.37 16 6 O -0.59 -31.29 16.33 -3.87 -0.06 -31.36 16 7 C -0.14 -6.59 5.87 -20.13 -0.12 -6.71 16 8 C -0.20 -7.60 9.55 22.70 0.22 -7.38 16 9 C -0.09 -3.67 10.01 22.18 0.22 -3.45 16 10 C -0.22 -10.08 9.78 22.77 0.22 -9.85 16 11 C 0.07 3.68 5.57 -21.32 -0.12 3.56 16 12 C -0.50 -27.24 9.05 23.47 0.21 -27.03 16 13 H 0.08 4.34 7.90 -2.91 -0.02 4.32 16 14 C 0.03 1.52 5.14 85.25 0.44 1.95 16 15 N -0.83 -46.58 10.97 21.82 0.24 -46.34 16 16 Si 0.98 39.90 29.59 68.60 2.03 41.93 16 17 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 18 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 19 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 20 C -0.13 -7.33 8.23 23.01 0.19 -7.14 16 21 C -0.15 -2.63 4.70 30.69 0.14 -2.48 16 22 C 0.06 0.92 6.56 72.02 0.47 1.39 16 23 O -0.40 -7.42 10.77 -148.98 -1.60 -9.02 16 24 C 0.06 0.83 6.57 72.01 0.47 1.30 16 25 C -0.14 -2.25 4.92 30.69 0.15 -2.10 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 0.91 5.02 -2.39 -0.01 0.89 16 28 H 0.06 0.93 6.87 -2.39 -0.02 0.91 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.41 10.37 4.22 -92.71 -0.39 9.97 16 32 H 0.14 3.87 6.38 -2.91 -0.02 3.85 16 33 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 34 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 35 H 0.29 14.88 8.30 -92.71 -0.77 14.11 16 36 H 0.10 6.06 5.76 -2.91 -0.02 6.05 16 37 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.08 1.35 6.97 -2.39 -0.02 1.33 16 39 H 0.07 0.82 6.61 -2.38 -0.02 0.81 16 40 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 0.74 6.60 -2.39 -0.02 0.73 16 42 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -70.38 346.40 3.03 -67.35 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.62 Total: 33.32 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 4.11 Total: -31.50 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -2.06 Total: -70.72 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.67 Total: -40.38 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -70.38 3.03 -67.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346987163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.238 kcal (2) G-P(sol) polarization free energy of solvation -70.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds