Wall clock time and date at job start Tue Mar 31 2020 09:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47254 * 2 1 4 4 C 1.38168 * 120.02935 * 265.00147 * 3 2 1 5 5 C 1.38241 * 120.05948 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.10928 * 359.97434 * 5 4 3 7 7 C 1.38125 * 120.05651 * 0.02562 * 6 5 4 8 8 C 1.38710 * 120.03137 * 84.95294 * 3 2 1 9 9 O 1.35903 * 120.05436 * 0.04811 * 8 3 2 10 10 C 1.42896 * 117.00075 * 179.97438 * 9 8 3 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47305 * 180.02562 * 11 10 9 13 13 O 1.21294 * 120.00108 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00171 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00346 * 179.97438 * 14 12 11 16 16 H 1.07990 * 120.00309 * 224.48467 * 15 14 12 17 17 C 1.38956 * 119.99836 * 44.48347 * 15 14 12 18 18 N 1.31407 * 120.00049 * 17.98792 * 17 15 14 19 19 Si 1.86801 * 119.99906 * 197.99114 * 17 15 14 20 20 H 1.48501 * 109.47086 * 90.00094 * 19 17 15 21 21 H 1.48501 * 109.46949 * 209.99930 * 19 17 15 22 22 H 1.48495 * 109.47234 * 329.99809 * 19 17 15 23 23 C 1.46497 * 120.00226 * 359.97438 * 14 12 11 24 24 C 1.52993 * 117.50413 * 183.28034 * 23 14 12 25 25 C 1.52993 * 117.50082 * 114.61370 * 23 14 12 26 26 H 1.08999 * 109.46850 * 60.00090 * 1 2 3 27 27 H 1.08998 * 109.47136 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47072 * 300.00230 * 1 2 3 29 29 H 1.08998 * 109.47072 * 239.99770 * 2 1 3 30 30 H 1.09005 * 109.47184 * 120.00149 * 2 1 3 31 31 H 1.08007 * 119.96807 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.94529 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.96849 * 180.02562 * 6 5 4 34 34 H 1.07996 * 120.02562 * 179.72479 * 7 6 5 35 35 H 1.09001 * 109.47174 * 299.99411 * 10 9 8 36 36 H 1.08996 * 109.47603 * 60.00076 * 10 9 8 37 37 H 1.08997 * 109.47308 * 299.99967 * 11 10 9 38 38 H 1.09006 * 109.47217 * 59.99870 * 11 10 9 39 39 H 0.97004 * 120.00360 * 174.96377 * 18 17 15 40 40 H 1.09011 * 115.54755 * 328.94969 * 23 14 12 41 41 H 1.09007 * 117.49860 * 359.97438 * 24 23 14 42 42 H 1.08995 * 117.50281 * 145.02082 * 24 23 14 43 43 H 1.09000 * 117.50215 * 214.98048 * 25 23 14 44 44 H 1.08997 * 117.50205 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0379 -1.1917 5 6 2.8215 3.3414 -1.1924 6 6 2.9537 4.0312 -0.0011 7 6 2.6264 3.4187 1.1929 8 6 2.1642 2.1105 1.1962 9 8 1.8415 1.5057 2.3697 10 6 2.0027 2.2761 3.5624 11 6 1.5922 1.4346 4.7725 12 6 1.7616 2.2472 6.0302 13 8 2.1709 3.3871 5.9652 14 7 1.4594 1.7069 7.2274 15 6 1.6140 2.4460 8.3717 16 1 2.0742 2.0032 9.2425 17 6 1.1785 3.7650 8.4110 18 7 0.3205 4.2006 7.5161 19 14 1.8129 4.9189 9.7360 20 1 3.0411 5.5996 9.2531 21 1 0.7744 5.9338 10.0472 22 1 2.1273 4.1407 10.9611 23 6 0.9657 0.3299 7.3061 24 6 0.5674 -0.2002 8.6848 25 6 1.8500 -0.6983 8.0140 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 2.2583 1.5015 -2.1234 32 1 3.0775 3.8222 -2.1250 33 1 3.3132 5.0496 -0.0044 34 1 2.7341 3.9563 2.1233 35 1 3.0461 2.5744 3.6640 36 1 1.3742 3.1650 3.5086 37 1 0.5487 1.1366 4.6707 38 1 2.2204 0.5454 4.8266 39 1 -0.0394 5.0987 7.5861 40 1 0.3849 -0.0110 6.4488 41 1 0.6732 0.4755 9.5337 42 1 -0.2749 -0.8901 8.7348 43 1 1.8509 -1.7158 7.6230 44 1 2.7995 -0.3505 8.4210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350089617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:34 Heat of formation + Delta-G solvation = -21.559134 kcal Electronic energy + Delta-G solvation = -24627.330787 eV Core-core repulsion = 21125.013812 eV Total energy + Delta-G solvation = -3502.316975 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -40.14258 -38.67225 -37.33795 -36.09592 -34.11304 -32.95723 -31.49675 -30.66140 -29.93946 -28.81009 -25.60253 -23.95341 -23.57369 -21.79290 -21.55350 -21.15700 -20.82441 -19.04615 -17.96308 -16.31607 -16.08595 -15.92821 -15.85023 -15.57020 -14.73453 -14.46896 -14.27308 -13.98346 -13.81020 -13.64483 -13.51471 -13.07486 -12.77061 -12.73519 -12.22358 -11.90244 -11.88084 -11.55795 -11.47252 -11.18004 -11.06636 -10.91287 -10.87526 -10.83875 -10.62815 -10.43058 -10.31092 -10.18164 -9.98862 -9.75715 -8.78824 -8.74756 -8.10676 -7.98889 -7.07901 -6.14938 -3.91219 1.37850 1.53405 3.27751 3.34384 3.38078 3.39357 3.82375 4.06095 4.26032 4.74192 4.77030 4.82077 4.89080 5.09020 5.19157 5.23841 5.29466 5.43464 5.43942 5.49082 5.50572 5.58638 5.61488 5.64233 5.74917 5.77185 5.89149 5.91270 6.01476 6.09688 6.14178 6.21294 6.26477 6.30386 6.36278 6.43989 6.48603 6.55027 6.59650 6.73392 6.90523 6.91545 7.58722 7.63864 8.23129 9.01463 9.09382 9.61177 10.22117 10.94270 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.003681 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.829251 B = 7604.888473 C = 8852.516646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.121 4.121 4 C -0.085 4.085 5 C -0.164 4.164 6 C -0.085 4.085 7 C -0.205 4.205 8 C 0.142 3.858 9 O -0.316 6.316 10 C 0.080 3.920 11 C -0.130 4.130 12 C 0.488 3.512 13 O -0.536 6.536 14 N -0.425 5.425 15 C -0.350 4.350 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.834 5.834 19 Si 0.913 3.087 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.073 3.927 24 C -0.173 4.173 25 C -0.207 4.207 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.264 0.736 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 -7.501 -13.338 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.122 4.122 4 C -0.103 4.103 5 C -0.183 4.183 6 C -0.103 4.103 7 C -0.224 4.224 8 C 0.096 3.904 9 O -0.229 6.229 10 C 0.005 3.995 11 C -0.171 4.171 12 C 0.275 3.725 13 O -0.415 6.415 14 N -0.146 5.146 15 C -0.476 4.476 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.467 5.467 19 Si 0.740 3.260 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.033 4.033 24 C -0.211 4.211 25 C -0.246 4.246 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.151 0.849 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.400 -6.897 -13.415 15.149 hybrid contribution 0.184 0.841 0.751 1.143 sum 1.584 -6.056 -12.664 14.127 Atomic orbital electron populations 1.21712 0.94952 1.01391 1.02129 1.20328 0.96088 0.92152 1.02512 1.19258 1.05104 0.97290 0.90549 1.20807 0.98145 0.94841 0.96538 1.20966 1.04136 0.95243 0.97914 1.20936 0.97922 0.99506 0.91950 1.21440 1.05911 0.95105 0.99945 1.18855 0.94427 0.91157 0.85939 1.85981 1.81512 1.42364 1.13072 1.22523 1.01841 0.94167 0.80983 1.21472 1.03088 0.99608 0.92912 1.19460 0.81801 0.87561 0.83698 1.90538 1.47231 1.18047 1.85656 1.42707 1.57247 1.08889 1.05736 1.18867 1.42143 0.94287 0.92326 0.90404 1.25248 0.93780 0.98252 0.96361 1.69818 1.25037 1.17885 1.33993 0.86201 0.78920 0.80319 0.80526 1.20302 1.21260 1.19854 1.21729 1.00082 0.85646 0.95838 1.23073 0.97200 1.02838 0.97966 1.23320 0.96013 0.98554 1.06709 0.93061 0.92677 0.92171 0.91612 0.90613 0.85861 0.86311 0.86056 0.84908 0.91524 0.91160 0.89763 0.89754 0.92551 0.87880 0.87488 0.89763 0.89737 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 37.16 0.37 -1.21 16 2 C -0.07 -0.84 5.79 -27.88 -0.16 -1.00 16 3 C -0.12 -1.62 5.15 -104.47 -0.54 -2.15 16 4 C -0.09 -0.98 9.68 -39.61 -0.38 -1.37 16 5 C -0.16 -1.88 10.04 -39.56 -0.40 -2.28 16 6 C -0.08 -1.08 10.04 -39.60 -0.40 -1.48 16 7 C -0.21 -3.08 9.04 -39.43 -0.36 -3.44 16 8 C 0.14 2.20 6.66 -39.22 -0.26 1.94 16 9 O -0.32 -5.26 9.27 -19.44 -0.18 -5.44 16 10 C 0.08 1.46 4.03 37.16 0.15 1.61 16 11 C -0.13 -2.49 4.69 -27.89 -0.13 -2.62 16 12 C 0.49 12.08 6.96 -10.99 -0.08 12.00 16 13 O -0.54 -15.33 13.76 5.55 0.08 -15.26 16 14 N -0.42 -10.47 2.83 -107.74 -0.31 -10.77 16 15 C -0.35 -9.42 7.91 -14.93 -0.12 -9.54 16 16 H 0.08 2.04 7.27 -52.49 -0.38 1.66 16 17 C 0.07 2.06 4.39 -17.47 -0.08 1.99 16 18 N -0.83 -24.43 11.74 55.50 0.65 -23.78 16 19 Si 0.91 21.74 29.59 -169.99 -5.03 16.71 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C 0.07 1.44 5.87 -67.94 -0.40 1.04 16 24 C -0.17 -3.08 9.80 -26.70 -0.26 -3.34 16 25 C -0.21 -3.48 10.36 -26.70 -0.28 -3.75 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 30 H 0.08 0.93 7.69 -51.93 -0.40 0.53 16 31 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.13 2.07 6.30 -52.49 -0.33 1.74 16 35 H 0.07 1.24 7.62 -51.93 -0.40 0.84 16 36 H 0.07 1.38 7.62 -51.93 -0.40 0.99 16 37 H 0.08 1.53 7.57 -51.93 -0.39 1.14 16 38 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 39 H 0.26 7.43 8.32 -40.82 -0.34 7.09 16 40 H 0.10 1.82 6.96 -51.92 -0.36 1.46 16 41 H 0.11 2.11 6.73 -51.92 -0.35 1.76 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -31.80 364.08 -9.40 -41.21 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.79 Total: 5.44 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -3.32 Total: -13.59 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.35 Total: -34.55 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.10 Total: -20.70 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.80 -9.40 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350089617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.646 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds