Wall clock time and date at job start Tue Mar 31 2020 09:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47254 * 2 1 4 4 C 1.38168 * 120.02935 * 265.00147 * 3 2 1 5 5 C 1.38241 * 120.05948 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.10928 * 359.97434 * 5 4 3 7 7 C 1.38125 * 120.05651 * 0.02562 * 6 5 4 8 8 C 1.38710 * 120.03137 * 84.95294 * 3 2 1 9 9 O 1.35903 * 120.05436 * 0.04811 * 8 3 2 10 10 C 1.42896 * 117.00075 * 179.97438 * 9 8 3 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47305 * 180.02562 * 11 10 9 13 13 O 1.21294 * 120.00108 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00171 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00346 * 179.97438 * 14 12 11 16 16 H 1.07990 * 120.00309 * 224.48467 * 15 14 12 17 17 C 1.38956 * 119.99836 * 44.48347 * 15 14 12 18 18 N 1.31407 * 120.00049 * 17.98792 * 17 15 14 19 19 Si 1.86801 * 119.99906 * 197.99114 * 17 15 14 20 20 H 1.48501 * 109.47086 * 90.00094 * 19 17 15 21 21 H 1.48501 * 109.46949 * 209.99930 * 19 17 15 22 22 H 1.48495 * 109.47234 * 329.99809 * 19 17 15 23 23 C 1.46497 * 120.00226 * 359.97438 * 14 12 11 24 24 C 1.52993 * 117.50413 * 183.28034 * 23 14 12 25 25 C 1.52993 * 117.50082 * 114.61370 * 23 14 12 26 26 H 1.08999 * 109.46850 * 60.00090 * 1 2 3 27 27 H 1.08998 * 109.47136 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47072 * 300.00230 * 1 2 3 29 29 H 1.08998 * 109.47072 * 239.99770 * 2 1 3 30 30 H 1.09005 * 109.47184 * 120.00149 * 2 1 3 31 31 H 1.08007 * 119.96807 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.94529 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.96849 * 180.02562 * 6 5 4 34 34 H 1.07996 * 120.02562 * 179.72479 * 7 6 5 35 35 H 1.09001 * 109.47174 * 299.99411 * 10 9 8 36 36 H 1.08996 * 109.47603 * 60.00076 * 10 9 8 37 37 H 1.08997 * 109.47308 * 299.99967 * 11 10 9 38 38 H 1.09006 * 109.47217 * 59.99870 * 11 10 9 39 39 H 0.97004 * 120.00360 * 174.96377 * 18 17 15 40 40 H 1.09011 * 115.54755 * 328.94969 * 23 14 12 41 41 H 1.09007 * 117.49860 * 359.97438 * 24 23 14 42 42 H 1.08995 * 117.50281 * 145.02082 * 24 23 14 43 43 H 1.09000 * 117.50215 * 214.98048 * 25 23 14 44 44 H 1.08997 * 117.50205 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0379 -1.1917 5 6 2.8215 3.3414 -1.1924 6 6 2.9537 4.0312 -0.0011 7 6 2.6264 3.4187 1.1929 8 6 2.1642 2.1105 1.1962 9 8 1.8415 1.5057 2.3697 10 6 2.0027 2.2761 3.5624 11 6 1.5922 1.4346 4.7725 12 6 1.7616 2.2472 6.0302 13 8 2.1709 3.3871 5.9652 14 7 1.4594 1.7069 7.2274 15 6 1.6140 2.4460 8.3717 16 1 2.0742 2.0032 9.2425 17 6 1.1785 3.7650 8.4110 18 7 0.3205 4.2006 7.5161 19 14 1.8129 4.9189 9.7360 20 1 3.0411 5.5996 9.2531 21 1 0.7744 5.9338 10.0472 22 1 2.1273 4.1407 10.9611 23 6 0.9657 0.3299 7.3061 24 6 0.5674 -0.2002 8.6848 25 6 1.8500 -0.6983 8.0140 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 2.2583 1.5015 -2.1234 32 1 3.0775 3.8222 -2.1250 33 1 3.3132 5.0496 -0.0044 34 1 2.7341 3.9563 2.1233 35 1 3.0461 2.5744 3.6640 36 1 1.3742 3.1650 3.5086 37 1 0.5487 1.1366 4.6707 38 1 2.2204 0.5454 4.8266 39 1 -0.0394 5.0987 7.5861 40 1 0.3849 -0.0110 6.4488 41 1 0.6732 0.4755 9.5337 42 1 -0.2749 -0.8901 8.7348 43 1 1.8509 -1.7158 7.6230 44 1 2.7995 -0.3505 8.4210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350089617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:25 Heat of formation + Delta-G solvation = -38.494916 kcal Electronic energy + Delta-G solvation = -24628.065178 eV Core-core repulsion = 21125.013812 eV Total energy + Delta-G solvation = -3503.051366 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 18.98 seconds Orbital eigenvalues (eV) -41.30137 -40.42514 -38.53961 -37.75728 -35.06920 -34.86687 -33.21315 -32.39427 -30.97434 -29.87151 -27.45205 -25.30429 -24.71859 -23.19215 -22.88376 -22.61252 -21.91078 -20.83209 -19.23183 -18.08932 -17.75194 -17.30037 -17.13088 -16.74593 -16.47474 -16.01478 -15.63594 -15.44263 -15.10206 -14.76268 -14.69209 -14.43596 -14.17210 -14.05123 -13.78345 -13.36534 -13.05940 -12.91327 -12.84155 -12.72093 -12.54281 -12.51478 -12.31823 -12.22389 -12.06723 -11.79607 -11.68243 -11.64376 -11.51372 -11.22131 -10.76311 -10.04951 -9.79038 -9.08390 -9.01134 -8.23072 -6.02117 0.37218 0.49661 1.34423 1.42787 1.47651 2.00797 2.22896 2.38207 2.81152 3.10306 3.16739 3.34604 3.76688 3.83929 3.94652 3.95632 4.07990 4.14144 4.17019 4.25714 4.30546 4.34956 4.43779 4.53846 4.55825 4.58324 4.68480 4.73814 4.81332 4.87769 4.90552 5.04796 5.06017 5.12869 5.21020 5.28954 5.42769 5.45584 5.47026 5.49488 5.56835 5.61414 5.90124 6.17593 6.41382 6.99865 7.13976 7.65096 8.28925 8.85694 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.003681 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.829251 B = 7604.888473 C = 8852.516646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C -0.127 4.127 4 C -0.082 4.082 5 C -0.155 4.155 6 C -0.094 4.094 7 C -0.228 4.228 8 C 0.108 3.892 9 O -0.317 6.317 10 C 0.098 3.902 11 C -0.113 4.113 12 C 0.471 3.529 13 O -0.588 6.588 14 N -0.440 5.440 15 C -0.357 4.357 16 H 0.080 0.920 17 C 0.023 3.977 18 N -0.872 5.872 19 Si 0.970 3.030 20 H -0.291 1.291 21 H -0.281 1.281 22 H -0.253 1.253 23 C 0.040 3.960 24 C -0.170 4.170 25 C -0.178 4.178 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.138 0.862 34 H 0.111 0.889 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.260 0.740 40 H 0.126 0.874 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.456 -9.821 -15.143 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.127 4.127 4 C -0.100 4.100 5 C -0.173 4.173 6 C -0.112 4.112 7 C -0.247 4.247 8 C 0.063 3.937 9 O -0.231 6.231 10 C 0.022 3.978 11 C -0.153 4.153 12 C 0.260 3.740 13 O -0.470 6.470 14 N -0.160 5.160 15 C -0.484 4.484 16 H 0.097 0.903 17 C -0.184 4.184 18 N -0.508 5.508 19 Si 0.795 3.205 20 H -0.218 1.218 21 H -0.206 1.206 22 H -0.176 1.176 23 C -0.064 4.064 24 C -0.207 4.207 25 C -0.217 4.217 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.177 0.823 32 H 0.171 0.829 33 H 0.156 0.844 34 H 0.129 0.871 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.069 0.931 40 H 0.144 0.856 41 H 0.099 0.901 42 H 0.136 0.864 43 H 0.143 0.857 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.513 -9.271 -15.198 17.867 hybrid contribution 0.191 1.494 1.213 1.934 sum 1.704 -7.776 -13.985 16.092 Atomic orbital electron populations 1.21687 0.94618 1.02270 1.01305 1.20388 0.96307 0.91059 1.03262 1.19628 1.04669 0.98243 0.90198 1.21260 0.96592 0.94996 0.97107 1.21399 1.02247 0.95207 0.98486 1.21218 0.97798 1.00495 0.91735 1.21462 1.07495 0.95449 1.00276 1.19218 0.96496 0.91884 0.86125 1.85932 1.82226 1.41926 1.12988 1.22107 1.00443 0.93337 0.81915 1.21269 1.04321 0.99357 0.90371 1.20341 0.80791 0.87480 0.85349 1.90495 1.49418 1.20428 1.86701 1.42942 1.57172 1.10764 1.05137 1.19125 1.41365 0.94872 0.93064 0.90274 1.26062 0.93989 0.99824 0.98487 1.69931 1.26837 1.17853 1.36136 0.85319 0.77669 0.78605 0.78933 1.21801 1.20620 1.17642 1.22064 1.02716 0.83671 0.97980 1.23128 0.99166 1.02735 0.95698 1.23335 0.94623 0.99338 1.04399 0.92142 0.90952 0.94710 0.88830 0.91855 0.82314 0.82948 0.84407 0.87050 0.92723 0.93723 0.88549 0.87179 0.93125 0.85622 0.90053 0.86427 0.85656 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.89 71.98 0.71 -2.11 16 2 C -0.07 -1.51 5.79 29.85 0.17 -1.34 16 3 C -0.13 -3.19 5.15 -19.77 -0.10 -3.29 16 4 C -0.08 -1.63 9.68 22.25 0.22 -1.42 16 5 C -0.16 -3.12 10.04 22.28 0.22 -2.89 16 6 C -0.09 -2.35 10.04 22.26 0.22 -2.13 16 7 C -0.23 -7.16 9.04 22.37 0.20 -6.96 16 8 C 0.11 3.41 6.66 22.50 0.15 3.56 16 9 O -0.32 -10.88 9.27 -92.46 -0.86 -11.74 16 10 C 0.10 3.78 4.03 71.98 0.29 4.07 16 11 C -0.11 -4.39 4.69 29.85 0.14 -4.25 16 12 C 0.47 24.15 6.96 87.66 0.61 24.76 16 13 O -0.59 -35.51 13.76 -3.07 -0.04 -35.56 16 14 N -0.44 -22.01 2.83 -613.15 -1.74 -23.75 16 15 C -0.36 -19.67 7.91 84.04 0.66 -19.01 16 16 H 0.08 4.22 7.27 -2.92 -0.02 4.19 16 17 C 0.02 1.29 4.39 84.93 0.37 1.67 16 18 N -0.87 -53.27 11.74 21.66 0.25 -53.02 16 19 Si 0.97 45.88 29.59 68.60 2.03 47.91 16 20 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.25 -10.95 7.11 99.48 0.71 -10.24 16 23 C 0.04 1.54 5.87 44.99 0.26 1.80 16 24 C -0.17 -5.71 9.80 30.62 0.30 -5.41 16 25 C -0.18 -5.52 10.36 30.62 0.32 -5.20 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 1.42 8.05 -2.39 -0.02 1.40 16 30 H 0.06 1.47 7.69 -2.38 -0.02 1.45 16 31 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.11 3.86 6.30 -2.91 -0.02 3.84 16 35 H 0.05 2.20 7.62 -2.39 -0.02 2.18 16 36 H 0.04 1.92 7.62 -2.39 -0.02 1.90 16 37 H 0.10 3.50 7.57 -2.39 -0.02 3.48 16 38 H 0.11 3.68 8.11 -2.38 -0.02 3.66 16 39 H 0.26 15.30 8.32 -92.71 -0.77 14.53 16 40 H 0.13 4.16 6.96 -2.38 -0.02 4.14 16 41 H 0.08 3.18 6.73 -2.38 -0.02 3.16 16 42 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -73.30 364.08 5.38 -67.91 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.98 Total: 26.39 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.76 Total: -18.16 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -1.48 Total: -76.77 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -0.90 Total: -47.29 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -73.30 5.38 -67.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350089617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.418 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.98 seconds