Wall clock time and date at job start Tue Mar 31 2020 07:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99952 * 2 1 4 4 C 1.52998 * 113.28314 * 313.06959 * 3 2 1 5 5 C 1.53497 * 114.20647 * 180.02562 * 3 2 1 6 6 N 1.47067 * 87.98394 * 220.34271 * 5 3 2 7 7 C 1.34776 * 136.05816 * 207.08110 * 6 5 3 8 8 O 1.21279 * 120.00275 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00308 * 180.02562 * 7 6 5 10 10 C 1.52994 * 109.47500 * 180.02562 * 9 7 6 11 11 H 1.09006 * 109.47161 * 54.05111 * 10 9 7 12 12 C 1.50705 * 109.46958 * 294.05716 * 10 9 7 13 13 H 1.08001 * 119.99673 * 330.07741 * 12 10 9 14 14 C 1.37874 * 119.99735 * 150.08462 * 12 10 9 15 15 N 1.31506 * 120.00441 * 6.56154 * 14 12 10 16 16 Si 1.86806 * 119.99498 * 186.56721 * 14 12 10 17 17 H 1.48501 * 109.47018 * 269.99324 * 16 14 12 18 18 H 1.48495 * 109.47509 * 29.99808 * 16 14 12 19 19 H 1.48502 * 109.47060 * 149.99826 * 16 14 12 20 20 C 1.50697 * 109.47396 * 174.05264 * 10 9 7 21 21 C 1.38240 * 119.99558 * 64.30176 * 20 10 9 22 22 C 1.38233 * 119.99699 * 179.81077 * 21 20 10 23 23 C 1.38239 * 120.00485 * 0.39662 * 22 21 20 24 24 C 1.38243 * 119.99212 * 359.85622 * 23 22 21 25 25 C 1.38224 * 120.00292 * 359.95752 * 24 23 22 26 26 C 1.47066 * 87.88512 * 27.34462 * 6 5 3 27 27 H 1.09003 * 109.46536 * 299.99958 * 1 2 3 28 28 H 1.08995 * 109.46815 * 59.99895 * 1 2 3 29 29 H 1.09000 * 109.46744 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47030 * 286.93374 * 4 3 2 31 31 H 1.09000 * 109.47192 * 46.93076 * 4 3 2 32 32 H 1.08994 * 109.47497 * 166.93556 * 4 3 2 33 33 H 1.09000 * 113.46842 * 105.56744 * 5 3 2 34 34 H 1.09000 * 113.46698 * 335.12413 * 5 3 2 35 35 H 1.08993 * 109.47032 * 59.99613 * 9 7 6 36 36 H 1.09003 * 109.46794 * 299.99903 * 9 7 6 37 37 H 0.97000 * 120.00571 * 354.73144 * 15 14 12 38 38 H 1.07995 * 120.00408 * 359.97438 * 21 20 10 39 39 H 1.08009 * 120.00178 * 180.23121 * 22 21 20 40 40 H 1.07990 * 120.00623 * 179.83645 * 23 22 21 41 41 H 1.08001 * 119.99479 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.99914 * 179.97438 * 25 24 23 43 43 H 1.08999 * 113.46796 * 87.43884 * 26 6 5 44 44 H 1.09003 * 113.46717 * 217.87835 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.3795 2.2483 -1.0267 5 6 3.5452 1.3110 -0.0006 6 7 3.4898 2.4309 0.9511 7 6 4.2842 3.4708 1.2732 8 8 5.3409 3.6275 0.6989 9 6 3.8596 4.4392 2.3471 10 6 4.9321 5.5173 2.5147 11 1 5.1356 5.9806 1.5493 12 6 6.1950 4.8910 3.0475 13 1 6.1392 4.0188 3.6819 14 6 7.4217 5.4317 2.7252 15 7 7.4868 6.5653 2.0618 16 14 8.9912 4.5537 3.2306 17 1 9.4133 5.0280 4.5731 18 1 8.7466 3.0898 3.2771 19 1 10.0615 4.8456 2.2435 20 6 4.4442 6.5651 3.4818 21 6 4.2054 6.2299 4.8015 22 6 3.7616 7.1919 5.6894 23 6 3.5488 8.4872 5.2560 24 6 3.7827 8.8211 3.9350 25 6 4.2302 7.8601 3.0480 26 6 2.1891 1.9127 1.4012 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.7002 1.9617 -2.0283 31 1 0.2934 2.1834 -0.9605 32 1 1.6954 3.2713 -0.8228 33 1 3.9779 1.5811 -0.9639 34 1 3.9827 0.4054 0.4196 35 1 3.7311 3.9046 3.2882 36 1 2.9167 4.9063 2.0629 37 1 6.6751 6.9821 1.7327 38 1 4.3679 5.2171 5.1393 39 1 3.5785 6.9309 6.7214 40 1 3.1996 9.2381 5.9491 41 1 3.6161 9.8330 3.5962 42 1 4.4125 8.1209 2.0159 43 1 2.2692 1.1658 2.1910 44 1 1.4665 2.6954 1.6322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356617712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:52 Heat of formation + Delta-G solvation = -15.311949 kcal Electronic energy + Delta-G solvation = -24979.818136 eV Core-core repulsion = 21477.772059 eV Total energy + Delta-G solvation = -3502.046077 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.63711 -38.74679 -37.93469 -36.28184 -34.24144 -31.42304 -30.54002 -30.12384 -29.06967 -27.81612 -26.43797 -26.04540 -24.50827 -22.79707 -21.68684 -20.51635 -19.78904 -18.45661 -17.20330 -16.86118 -16.33084 -15.88103 -15.85744 -15.38907 -14.87784 -14.49507 -14.15598 -14.09980 -13.66033 -13.56344 -13.48386 -12.82085 -12.71747 -12.55366 -12.37539 -12.31789 -12.11113 -11.96340 -11.78723 -11.47206 -11.46716 -10.96476 -10.70378 -10.65188 -10.44223 -10.15965 -10.04233 -9.81116 -9.67412 -9.09396 -8.65696 -8.38307 -8.27049 -8.15409 -7.64903 -6.23983 -3.91765 2.17634 2.22961 2.98516 3.30314 3.49911 3.57295 3.70424 3.70987 4.11515 4.48472 4.59838 4.66095 4.78203 5.07625 5.10998 5.13212 5.34678 5.36851 5.44582 5.50138 5.55061 5.58465 5.61595 5.61917 5.70775 5.74715 5.74971 5.88690 5.96658 6.06719 6.08882 6.20868 6.30060 6.40182 6.68069 6.77914 6.92059 6.95550 7.17965 7.20971 7.36808 7.70282 7.84193 8.11270 8.21228 8.50373 8.89709 8.97548 9.77566 11.16455 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.004551 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.176735 B = 6150.744880 C = 7613.647340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.069 3.931 4 C -0.155 4.155 5 C 0.120 3.880 6 N -0.654 5.654 7 C 0.548 3.452 8 O -0.492 6.492 9 C -0.107 4.107 10 C 0.071 3.929 11 H 0.051 0.949 12 C -0.569 4.569 13 H 0.045 0.955 14 C 0.033 3.967 15 N -0.905 5.905 16 Si 1.066 2.934 17 H -0.291 1.291 18 H -0.290 1.290 19 H -0.285 1.285 20 C -0.030 4.030 21 C -0.108 4.108 22 C -0.129 4.129 23 C -0.153 4.153 24 C -0.124 4.124 25 C -0.130 4.130 26 C 0.082 3.918 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.270 0.730 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.419 -7.609 -1.417 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.285 6.285 3 C 0.028 3.972 4 C -0.212 4.212 5 C -0.004 4.004 6 N -0.396 5.396 7 C 0.338 3.662 8 O -0.362 6.362 9 C -0.147 4.147 10 C 0.052 3.948 11 H 0.070 0.930 12 C -0.607 4.607 13 H 0.064 0.936 14 C -0.173 4.173 15 N -0.541 5.541 16 Si 0.896 3.104 17 H -0.218 1.218 18 H -0.216 1.216 19 H -0.211 1.211 20 C -0.031 4.031 21 C -0.126 4.126 22 C -0.147 4.147 23 C -0.171 4.171 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.042 4.042 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.870 -7.328 -1.693 15.778 hybrid contribution -1.825 -0.007 0.269 1.845 sum -15.694 -7.336 -1.424 17.383 Atomic orbital electron populations 1.22786 0.81144 1.02693 1.00356 1.87956 1.19831 1.26023 1.94718 1.23271 0.94595 0.84017 0.95279 1.21960 1.00868 0.99758 0.98605 1.22828 0.92203 0.90409 0.94916 1.49577 1.22466 1.26341 1.41189 1.20530 0.82461 0.79498 0.83665 1.90770 1.21023 1.72603 1.51795 1.21638 0.99953 0.96844 0.96284 1.17893 0.92642 0.89438 0.94833 0.93044 1.21554 0.90789 1.14620 1.33717 0.93628 1.25590 1.01597 0.95319 0.94787 1.70727 1.32742 1.15472 1.35138 0.83592 0.75674 0.75165 0.76017 1.21778 1.21647 1.21055 1.20792 0.91089 0.95430 0.95769 1.20916 0.99232 0.99126 0.93338 1.21012 1.01229 0.93736 0.98749 1.20828 1.04148 0.96320 0.95807 1.20964 1.00823 0.98511 0.93925 1.21062 1.00814 0.93629 0.99301 1.23562 0.85849 0.97701 0.97090 0.93828 0.93482 0.89618 0.91102 0.91399 0.90521 0.90040 0.89554 0.90289 0.91746 0.91851 0.86771 0.87435 0.87561 0.87441 0.87163 0.89583 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.36 101.05 1.05 1.24 16 2 O -0.37 -3.96 10.71 -35.23 -0.38 -4.33 16 3 C 0.07 0.77 1.56 -89.97 -0.14 0.63 16 4 C -0.15 -1.50 8.96 37.16 0.33 -1.16 16 5 C 0.12 1.67 8.04 -8.51 -0.07 1.60 16 6 N -0.65 -10.66 3.50 -185.04 -0.65 -11.30 16 7 C 0.55 11.50 7.83 -10.98 -0.09 11.41 16 8 O -0.49 -12.78 15.79 5.56 0.09 -12.69 16 9 C -0.11 -2.14 4.77 -27.88 -0.13 -2.28 16 10 C 0.07 1.72 1.31 -92.93 -0.12 1.60 16 11 H 0.05 1.40 6.24 -51.93 -0.32 1.07 16 12 C -0.57 -15.69 6.40 -34.44 -0.22 -15.91 16 13 H 0.05 1.27 7.82 -52.49 -0.41 0.86 16 14 C 0.03 0.95 5.45 -17.82 -0.10 0.86 16 15 N -0.91 -27.84 13.63 55.43 0.76 -27.08 16 16 Si 1.07 26.71 29.91 -169.99 -5.08 21.63 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 20 C -0.03 -0.67 4.77 -104.62 -0.50 -1.17 16 21 C -0.11 -2.21 8.88 -39.58 -0.35 -2.57 16 22 C -0.13 -2.33 10.05 -39.58 -0.40 -2.72 16 23 C -0.15 -2.65 10.05 -39.58 -0.40 -3.05 16 24 C -0.12 -2.28 10.05 -39.58 -0.40 -2.67 16 25 C -0.13 -2.72 9.67 -39.59 -0.38 -3.10 16 26 C 0.08 0.99 7.82 -8.37 -0.07 0.93 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.30 6.36 -51.93 -0.33 -0.03 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.52 6.12 -51.93 -0.32 0.20 16 32 H 0.08 0.84 7.94 -51.93 -0.41 0.43 16 33 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.50 7.87 -51.93 -0.41 1.09 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.27 8.20 6.68 -40.82 -0.27 7.92 16 38 H 0.11 2.29 7.80 -52.49 -0.41 1.88 16 39 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.11 2.28 7.95 -52.49 -0.42 1.86 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -34.02 364.85 -8.49 -42.51 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.75 Total: 2.14 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -1.98 Total: -16.37 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.11 Total: -38.38 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.29 Total: -17.03 kcal Atomic # 14 Polarization: 26.71 SS G_CDS: -5.08 Total: 21.63 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.02 -8.49 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356617712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.196 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds