Wall clock time and date at job start Tue Mar 31 2020 07:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99952 * 2 1 4 4 C 1.52998 * 113.28314 * 313.06959 * 3 2 1 5 5 C 1.53497 * 114.20647 * 180.02562 * 3 2 1 6 6 N 1.47067 * 87.98394 * 220.34271 * 5 3 2 7 7 C 1.34776 * 136.05816 * 207.08110 * 6 5 3 8 8 O 1.21279 * 120.00275 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00308 * 180.02562 * 7 6 5 10 10 C 1.52994 * 109.47500 * 180.02562 * 9 7 6 11 11 H 1.09006 * 109.47161 * 54.05111 * 10 9 7 12 12 C 1.50705 * 109.46958 * 294.05716 * 10 9 7 13 13 H 1.08001 * 119.99673 * 330.07741 * 12 10 9 14 14 C 1.37874 * 119.99735 * 150.08462 * 12 10 9 15 15 N 1.31506 * 120.00441 * 6.56154 * 14 12 10 16 16 Si 1.86806 * 119.99498 * 186.56721 * 14 12 10 17 17 H 1.48501 * 109.47018 * 269.99324 * 16 14 12 18 18 H 1.48495 * 109.47509 * 29.99808 * 16 14 12 19 19 H 1.48502 * 109.47060 * 149.99826 * 16 14 12 20 20 C 1.50697 * 109.47396 * 174.05264 * 10 9 7 21 21 C 1.38240 * 119.99558 * 64.30176 * 20 10 9 22 22 C 1.38233 * 119.99699 * 179.81077 * 21 20 10 23 23 C 1.38239 * 120.00485 * 0.39662 * 22 21 20 24 24 C 1.38243 * 119.99212 * 359.85622 * 23 22 21 25 25 C 1.38224 * 120.00292 * 359.95752 * 24 23 22 26 26 C 1.47066 * 87.88512 * 27.34462 * 6 5 3 27 27 H 1.09003 * 109.46536 * 299.99958 * 1 2 3 28 28 H 1.08995 * 109.46815 * 59.99895 * 1 2 3 29 29 H 1.09000 * 109.46744 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47030 * 286.93374 * 4 3 2 31 31 H 1.09000 * 109.47192 * 46.93076 * 4 3 2 32 32 H 1.08994 * 109.47497 * 166.93556 * 4 3 2 33 33 H 1.09000 * 113.46842 * 105.56744 * 5 3 2 34 34 H 1.09000 * 113.46698 * 335.12413 * 5 3 2 35 35 H 1.08993 * 109.47032 * 59.99613 * 9 7 6 36 36 H 1.09003 * 109.46794 * 299.99903 * 9 7 6 37 37 H 0.97000 * 120.00571 * 354.73144 * 15 14 12 38 38 H 1.07995 * 120.00408 * 359.97438 * 21 20 10 39 39 H 1.08009 * 120.00178 * 180.23121 * 22 21 20 40 40 H 1.07990 * 120.00623 * 179.83645 * 23 22 21 41 41 H 1.08001 * 119.99479 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.99914 * 179.97438 * 25 24 23 43 43 H 1.08999 * 113.46796 * 87.43884 * 26 6 5 44 44 H 1.09003 * 113.46717 * 217.87835 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.3795 2.2483 -1.0267 5 6 3.5452 1.3110 -0.0006 6 7 3.4898 2.4309 0.9511 7 6 4.2842 3.4708 1.2732 8 8 5.3409 3.6275 0.6989 9 6 3.8596 4.4392 2.3471 10 6 4.9321 5.5173 2.5147 11 1 5.1356 5.9806 1.5493 12 6 6.1950 4.8910 3.0475 13 1 6.1392 4.0188 3.6819 14 6 7.4217 5.4317 2.7252 15 7 7.4868 6.5653 2.0618 16 14 8.9912 4.5537 3.2306 17 1 9.4133 5.0280 4.5731 18 1 8.7466 3.0898 3.2771 19 1 10.0615 4.8456 2.2435 20 6 4.4442 6.5651 3.4818 21 6 4.2054 6.2299 4.8015 22 6 3.7616 7.1919 5.6894 23 6 3.5488 8.4872 5.2560 24 6 3.7827 8.8211 3.9350 25 6 4.2302 7.8601 3.0480 26 6 2.1891 1.9127 1.4012 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.7002 1.9617 -2.0283 31 1 0.2934 2.1834 -0.9605 32 1 1.6954 3.2713 -0.8228 33 1 3.9779 1.5811 -0.9639 34 1 3.9827 0.4054 0.4196 35 1 3.7311 3.9046 3.2882 36 1 2.9167 4.9063 2.0629 37 1 6.6751 6.9821 1.7327 38 1 4.3679 5.2171 5.1393 39 1 3.5785 6.9309 6.7214 40 1 3.1996 9.2381 5.9491 41 1 3.6161 9.8330 3.5962 42 1 4.4125 8.1209 2.0159 43 1 2.2692 1.1658 2.1910 44 1 1.4665 2.6954 1.6322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356617712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:51 Heat of formation + Delta-G solvation = -36.562722 kcal Electronic energy + Delta-G solvation = -24980.739639 eV Core-core repulsion = 21477.772059 eV Total energy + Delta-G solvation = -3502.967580 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79860 -40.28206 -39.37804 -37.36727 -36.09625 -33.36949 -31.76571 -31.61167 -30.43734 -28.82303 -27.49043 -27.22243 -26.24714 -24.48184 -23.20873 -21.84542 -21.23927 -19.75149 -18.77553 -18.38883 -17.69415 -17.28799 -17.06378 -16.33918 -16.22449 -15.80295 -15.68862 -15.65558 -15.47819 -14.84015 -14.40811 -14.36101 -14.12422 -14.05110 -13.99065 -13.44603 -13.32022 -13.14859 -13.03630 -12.77878 -12.74805 -12.63455 -12.31012 -12.09776 -11.98947 -11.74618 -11.53951 -11.48816 -10.92344 -10.68173 -10.55016 -10.34483 -9.74357 -9.65490 -9.29366 -8.48350 -6.14217 0.66471 0.72056 1.44961 1.57239 1.67999 1.70922 1.79582 2.58078 2.74848 3.08703 3.17762 3.33829 3.50005 3.74532 4.01355 4.10545 4.25450 4.26832 4.36294 4.40527 4.43359 4.44048 4.49374 4.52659 4.57461 4.61229 4.66744 4.73146 4.77497 4.79189 4.82724 4.88362 4.93631 5.10833 5.14817 5.21787 5.39162 5.40010 5.73326 5.80665 5.91654 6.18913 6.21216 6.27920 6.36684 6.70913 6.74990 7.31448 7.61302 8.92104 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.004551 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.176735 B = 6150.744880 C = 7613.647340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.381 6.381 3 C 0.091 3.909 4 C -0.153 4.153 5 C 0.105 3.895 6 N -0.655 5.655 7 C 0.544 3.456 8 O -0.559 6.559 9 C -0.098 4.098 10 C 0.073 3.927 11 H 0.008 0.992 12 C -0.560 4.560 13 H 0.037 0.963 14 C -0.024 4.024 15 N -0.940 5.940 16 Si 1.102 2.898 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.290 1.290 20 C -0.054 4.054 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.144 4.144 24 C -0.124 4.124 25 C -0.152 4.152 26 C 0.082 3.918 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.258 0.742 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.136 0.864 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.318 -8.015 0.634 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.299 6.299 3 C 0.050 3.950 4 C -0.210 4.210 5 C -0.018 4.018 6 N -0.394 5.394 7 C 0.335 3.665 8 O -0.436 6.436 9 C -0.138 4.138 10 C 0.054 3.946 11 H 0.026 0.974 12 C -0.598 4.598 13 H 0.055 0.945 14 C -0.222 4.222 15 N -0.579 5.579 16 Si 0.926 3.074 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.216 1.216 20 C -0.055 4.055 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.161 4.161 24 C -0.142 4.142 25 C -0.171 4.171 26 C -0.041 4.041 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.130 0.870 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.851 -7.783 0.379 18.566 hybrid contribution -1.128 0.037 -0.373 1.188 sum -17.979 -7.746 0.006 19.577 Atomic orbital electron populations 1.23059 0.79021 1.04205 1.01515 1.87939 1.22042 1.25172 1.94782 1.22934 0.92422 0.84710 0.94904 1.21971 1.02508 0.98294 0.98251 1.23084 0.95150 0.89516 0.94045 1.49421 1.23309 1.25465 1.41248 1.20610 0.82005 0.80563 0.83293 1.90735 1.24038 1.74587 1.54210 1.21488 0.99620 0.95913 0.96775 1.17709 0.92934 0.90855 0.93086 0.97369 1.21798 0.92233 1.13664 1.32077 0.94493 1.26743 1.04846 0.95596 0.95045 1.70815 1.32097 1.17102 1.37849 0.83131 0.72949 0.74763 0.76520 1.19628 1.20791 1.21600 1.20557 0.93493 0.95244 0.96188 1.20991 1.00245 0.99966 0.92943 1.21405 0.99412 0.93398 0.99912 1.21321 1.02126 0.96927 0.95766 1.21302 0.99564 0.99136 0.94175 1.21120 1.02310 0.94111 0.99524 1.23854 0.83725 0.98398 0.98128 0.92674 0.92256 0.88085 0.90766 0.88656 0.92077 0.90960 0.89172 0.88980 0.89128 0.93126 0.87008 0.83896 0.83444 0.84624 0.88652 0.88339 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.36 113.37 1.17 1.37 16 2 O -0.38 -7.25 10.71 -148.98 -1.60 -8.85 16 3 C 0.09 1.88 1.56 -10.37 -0.02 1.86 16 4 C -0.15 -2.68 8.96 71.98 0.65 -2.03 16 5 C 0.10 2.93 8.04 83.18 0.67 3.60 16 6 N -0.66 -21.44 3.50 -858.20 -3.00 -24.44 16 7 C 0.54 23.70 7.83 87.66 0.69 24.39 16 8 O -0.56 -31.00 15.79 -3.03 -0.05 -31.05 16 9 C -0.10 -4.01 4.77 29.85 0.14 -3.87 16 10 C 0.07 3.72 1.31 -12.29 -0.02 3.70 16 11 H 0.01 0.48 6.24 -2.38 -0.01 0.46 16 12 C -0.56 -32.07 6.40 25.60 0.16 -31.91 16 13 H 0.04 2.11 7.82 -2.91 -0.02 2.09 16 14 C -0.02 -1.44 5.45 84.66 0.46 -0.98 16 15 N -0.94 -60.84 13.63 21.44 0.29 -60.54 16 16 Si 1.10 55.39 29.91 68.60 2.05 57.44 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 20 C -0.05 -2.46 4.77 -19.87 -0.09 -2.55 16 21 C -0.12 -4.93 8.88 22.27 0.20 -4.73 16 22 C -0.12 -4.03 10.05 22.27 0.22 -3.81 16 23 C -0.14 -4.41 10.05 22.27 0.22 -4.19 16 24 C -0.12 -4.29 10.05 22.27 0.22 -4.06 16 25 C -0.15 -6.49 9.67 22.27 0.22 -6.27 16 26 C 0.08 1.80 7.82 83.27 0.65 2.46 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.54 6.36 -2.39 -0.02 0.52 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.26 8.14 -2.38 -0.02 1.25 16 31 H 0.09 1.14 6.12 -2.39 -0.01 1.13 16 32 H 0.06 1.28 7.94 -2.39 -0.02 1.27 16 33 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 34 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.09 3.48 7.87 -2.39 -0.02 3.46 16 36 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.26 16.79 6.68 -92.71 -0.62 16.17 16 38 H 0.11 4.41 7.80 -2.91 -0.02 4.38 16 39 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 40 H 0.15 3.36 8.06 -2.92 -0.02 3.34 16 41 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 42 H 0.10 4.21 7.95 -2.91 -0.02 4.18 16 43 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.10 1.78 8.13 -2.39 -0.02 1.76 16 Total: -1.00 -79.16 364.85 4.38 -74.78 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 1.12 Total: 19.68 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 5.55 Total: -27.02 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -2.71 Total: -84.99 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -1.64 Total: -39.89 kcal Atomic # 14 Polarization: 55.39 SS G_CDS: 2.05 Total: 57.44 kcal Total: -79.16 4.38 -74.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356617712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.221 kcal (2) G-P(sol) polarization free energy of solvation -79.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds