Wall clock time and date at job start Tue Mar 31 2020 07:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00106 * 2 1 4 4 C 1.52995 * 113.28206 * 313.06613 * 3 2 1 5 5 C 1.53502 * 114.20641 * 179.97438 * 3 2 1 6 6 N 1.47060 * 87.98572 * 220.34756 * 5 3 2 7 7 C 1.34780 * 136.05709 * 207.09121 * 6 5 3 8 8 O 1.21282 * 119.99705 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00116 * 179.97438 * 7 6 5 10 10 C 1.52995 * 109.47520 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.47074 * 305.00434 * 10 9 7 12 12 C 1.50699 * 109.47067 * 64.99445 * 10 9 7 13 13 H 1.08000 * 120.00683 * 234.68635 * 12 10 9 14 14 C 1.37876 * 119.99700 * 54.68999 * 12 10 9 15 15 N 1.31518 * 120.00136 * 4.67701 * 14 12 10 16 16 Si 1.86810 * 120.00103 * 184.67783 * 14 12 10 17 17 H 1.48500 * 109.46967 * 60.00014 * 16 14 12 18 18 H 1.48495 * 109.46994 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.46910 * 299.99989 * 16 14 12 20 20 C 1.50692 * 109.47700 * 185.00035 * 10 9 7 21 21 C 1.38234 * 120.00275 * 151.59636 * 20 10 9 22 22 C 1.38234 * 120.00144 * 179.97438 * 21 20 10 23 23 C 1.38240 * 120.00153 * 359.97438 * 22 21 20 24 24 C 1.38237 * 119.99733 * 0.06901 * 23 22 21 25 25 C 1.38233 * 119.99874 * 359.89250 * 24 23 22 26 26 C 1.47071 * 87.88925 * 27.34273 * 6 5 3 27 27 H 1.08998 * 109.46779 * 300.00195 * 1 2 3 28 28 H 1.08999 * 109.46464 * 59.99965 * 1 2 3 29 29 H 1.08996 * 109.46867 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46981 * 286.93579 * 4 3 2 31 31 H 1.08998 * 109.47006 * 46.93400 * 4 3 2 32 32 H 1.09002 * 109.47168 * 166.93347 * 4 3 2 33 33 H 1.08997 * 113.46379 * 105.56449 * 5 3 2 34 34 H 1.09004 * 113.51778 * 335.13779 * 5 3 2 35 35 H 1.09002 * 109.47308 * 59.99459 * 9 7 6 36 36 H 1.09004 * 109.47175 * 299.99979 * 9 7 6 37 37 H 0.97003 * 120.00145 * 179.97438 * 15 14 12 38 38 H 1.07995 * 120.00249 * 359.97438 * 21 20 10 39 39 H 1.08003 * 120.00170 * 179.72082 * 22 21 20 40 40 H 1.07995 * 120.00383 * 179.97438 * 23 22 21 41 41 H 1.07999 * 119.99780 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.99938 * 180.10710 * 25 24 23 43 43 H 1.08994 * 113.46549 * 87.43702 * 26 6 5 44 44 H 1.08994 * 113.46725 * 217.88320 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.3796 2.2482 -1.0267 5 6 3.5453 1.3110 0.0006 6 7 3.4892 2.4310 0.9519 7 6 4.2834 3.4712 1.2743 8 8 5.3408 3.6271 0.7012 9 6 3.8575 4.4404 2.3467 10 6 4.9304 5.5178 2.5159 11 1 5.8922 5.0448 2.7145 12 6 5.0243 6.3358 1.2537 13 1 5.9742 6.4480 0.7522 14 6 3.8974 6.9410 0.7391 15 7 2.7604 6.8818 1.3974 16 14 3.9856 7.8452 -0.8933 17 1 4.4045 6.9009 -1.9601 18 1 2.6496 8.4037 -1.2225 19 1 4.9728 8.9500 -0.7944 20 6 4.5640 6.4150 3.6698 21 6 5.5558 7.0508 4.3931 22 6 5.2196 7.8743 5.4513 23 6 3.8916 8.0624 5.7860 24 6 2.8999 7.4259 5.0633 25 6 3.2360 6.6031 4.0046 26 6 2.1881 1.9132 1.4012 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7003 1.9616 -2.0283 31 1 0.2936 2.1834 -0.9605 32 1 1.6956 3.2713 -0.8228 33 1 3.9787 1.5806 -0.9624 34 1 3.9833 0.4057 0.4212 35 1 3.7276 3.9065 3.2882 36 1 2.9150 4.9074 2.0609 37 1 1.9677 7.3080 1.0356 38 1 6.5932 6.9043 4.1314 39 1 5.9947 8.3674 6.0192 40 1 3.6289 8.7053 6.6129 41 1 1.8624 7.5725 5.3250 42 1 2.4611 6.1071 3.4389 43 1 2.2675 1.1665 2.1912 44 1 1.4653 2.6960 1.6313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356617714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:01 Heat of formation + Delta-G solvation = -6.242020 kcal Electronic energy + Delta-G solvation = -25451.193948 eV Core-core repulsion = 21949.541173 eV Total energy + Delta-G solvation = -3501.652775 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.44758 -38.52981 -37.68834 -36.10927 -34.19113 -31.11646 -30.39010 -29.81284 -28.65364 -27.65677 -26.46307 -25.98792 -24.96294 -22.50084 -21.41623 -20.30446 -19.51289 -18.22159 -17.03507 -16.45703 -16.14434 -15.60736 -15.54954 -15.18829 -14.95944 -14.34056 -14.21431 -13.86237 -13.61873 -13.36294 -13.30058 -12.65137 -12.57106 -12.28881 -12.21090 -12.00761 -11.76925 -11.61545 -11.47906 -11.37102 -11.29966 -10.90619 -10.81374 -10.48924 -10.44096 -10.17203 -9.95281 -9.64648 -9.31294 -9.20042 -8.82870 -8.45382 -8.18457 -7.80741 -7.44574 -5.98709 -4.08566 2.49349 2.58033 3.18414 3.31764 3.33976 3.41295 3.54994 3.86833 4.29952 4.42231 4.67992 4.97089 4.99312 5.23097 5.23578 5.27509 5.36873 5.51293 5.57670 5.63358 5.73225 5.80731 5.81237 5.85856 5.89959 5.91644 6.01073 6.13438 6.33886 6.36664 6.50100 6.57196 6.72670 6.77249 7.10789 7.13391 7.16088 7.26314 7.45734 7.53731 7.68802 7.92276 8.08069 8.17429 8.32648 8.35463 8.87698 9.12122 9.54506 10.95206 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.004809 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.218802 B = 5820.750495 C = 6577.536306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.370 6.370 3 C 0.070 3.930 4 C -0.156 4.156 5 C 0.118 3.882 6 N -0.651 5.651 7 C 0.558 3.442 8 O -0.520 6.520 9 C -0.129 4.129 10 C 0.087 3.913 11 H 0.037 0.963 12 C -0.470 4.470 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.027 4.027 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.154 4.154 24 C -0.143 4.143 25 C -0.068 4.068 26 C 0.084 3.916 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.133 0.867 37 H 0.261 0.739 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.139 0.861 43 H 0.084 0.916 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 -9.518 1.553 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.288 6.288 3 C 0.029 3.971 4 C -0.213 4.213 5 C -0.006 4.006 6 N -0.392 5.392 7 C 0.351 3.649 8 O -0.394 6.394 9 C -0.169 4.169 10 C 0.068 3.932 11 H 0.056 0.944 12 C -0.508 4.508 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.027 4.027 21 C -0.149 4.149 22 C -0.160 4.160 23 C -0.172 4.172 24 C -0.161 4.161 25 C -0.087 4.087 26 C -0.041 4.041 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.150 0.850 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.157 0.843 43 H 0.102 0.898 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.371 -9.298 1.257 11.341 hybrid contribution -0.346 0.915 -0.903 1.331 sum -6.717 -8.383 0.354 10.748 Atomic orbital electron populations 1.22771 0.81223 1.02490 1.00464 1.87926 1.19789 1.26289 1.94765 1.23293 0.94456 0.83817 0.95518 1.21969 1.00798 1.00224 0.98327 1.22814 0.92361 0.90380 0.95023 1.49524 1.22530 1.26101 1.41067 1.20853 0.82022 0.78289 0.83761 1.90638 1.22870 1.72354 1.53496 1.21891 1.06649 0.94794 0.93573 1.17652 0.92978 0.90651 0.91951 0.94413 1.20951 0.95033 1.28990 1.05811 0.92285 1.24877 0.95619 0.96207 0.97201 1.69667 1.00474 1.45328 1.37520 0.86660 0.76984 0.79993 0.84522 1.20345 1.21391 1.20327 1.20311 0.92759 0.97005 0.92666 1.20897 0.98880 0.98860 0.96311 1.20800 0.95652 1.00600 0.98922 1.20768 0.93445 1.02082 1.00903 1.21042 0.97781 0.99737 0.97584 1.21358 0.97054 0.97190 0.93088 1.23534 0.86146 0.97650 0.96766 0.93779 0.93504 0.89770 0.91373 0.91487 0.90024 0.90259 0.89823 0.92964 0.84972 0.92913 0.87636 0.88072 0.88288 0.88092 0.84308 0.89819 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.36 101.05 1.05 1.28 16 2 O -0.37 -4.45 10.71 -35.23 -0.38 -4.82 16 3 C 0.07 0.90 1.56 -89.97 -0.14 0.76 16 4 C -0.16 -1.94 8.97 37.16 0.33 -1.61 16 5 C 0.12 1.77 8.04 -8.50 -0.07 1.70 16 6 N -0.65 -11.56 3.50 -185.01 -0.65 -12.21 16 7 C 0.56 12.33 7.83 -10.99 -0.09 12.24 16 8 O -0.52 -13.40 15.76 5.56 0.09 -13.31 16 9 C -0.13 -2.82 3.91 -27.89 -0.11 -2.93 16 10 C 0.09 2.11 1.97 -92.93 -0.18 1.93 16 11 H 0.04 0.94 7.91 -51.93 -0.41 0.53 16 12 C -0.47 -12.67 7.27 -34.44 -0.25 -12.92 16 13 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 14 C 0.06 1.59 5.13 -17.82 -0.09 1.50 16 15 N -0.89 -22.50 7.97 55.43 0.44 -22.06 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 C -0.03 -0.62 4.69 -104.63 -0.49 -1.11 16 21 C -0.13 -2.82 9.71 -39.58 -0.38 -3.21 16 22 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 23 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 24 C -0.14 -2.84 10.05 -39.58 -0.40 -3.23 16 25 C -0.07 -1.50 7.46 -39.58 -0.30 -1.80 16 26 C 0.08 1.15 7.82 -8.36 -0.07 1.09 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.38 6.36 -51.93 -0.33 0.05 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.69 6.12 -51.93 -0.32 0.37 16 32 H 0.08 1.23 7.94 -51.93 -0.41 0.82 16 33 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.13 3.03 4.70 -51.93 -0.24 2.79 16 37 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 38 H 0.11 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.14 3.11 5.17 -52.48 -0.27 2.84 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.08 8.13 -51.93 -0.42 0.65 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -29.69 355.27 -8.74 -38.43 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.60 Total: 4.95 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.98 Total: -12.73 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: -0.21 Total: -34.27 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.29 Total: -18.14 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.69 -8.74 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356617714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.190 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds