Wall clock time and date at job start Tue Mar 31 2020 07:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00106 * 2 1 4 4 C 1.52995 * 113.28206 * 313.06613 * 3 2 1 5 5 C 1.53502 * 114.20641 * 179.97438 * 3 2 1 6 6 N 1.47060 * 87.98572 * 220.34756 * 5 3 2 7 7 C 1.34780 * 136.05709 * 207.09121 * 6 5 3 8 8 O 1.21282 * 119.99705 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00116 * 179.97438 * 7 6 5 10 10 C 1.52995 * 109.47520 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.47074 * 305.00434 * 10 9 7 12 12 C 1.50699 * 109.47067 * 64.99445 * 10 9 7 13 13 H 1.08000 * 120.00683 * 234.68635 * 12 10 9 14 14 C 1.37876 * 119.99700 * 54.68999 * 12 10 9 15 15 N 1.31518 * 120.00136 * 4.67701 * 14 12 10 16 16 Si 1.86810 * 120.00103 * 184.67783 * 14 12 10 17 17 H 1.48500 * 109.46967 * 60.00014 * 16 14 12 18 18 H 1.48495 * 109.46994 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.46910 * 299.99989 * 16 14 12 20 20 C 1.50692 * 109.47700 * 185.00035 * 10 9 7 21 21 C 1.38234 * 120.00275 * 151.59636 * 20 10 9 22 22 C 1.38234 * 120.00144 * 179.97438 * 21 20 10 23 23 C 1.38240 * 120.00153 * 359.97438 * 22 21 20 24 24 C 1.38237 * 119.99733 * 0.06901 * 23 22 21 25 25 C 1.38233 * 119.99874 * 359.89250 * 24 23 22 26 26 C 1.47071 * 87.88925 * 27.34273 * 6 5 3 27 27 H 1.08998 * 109.46779 * 300.00195 * 1 2 3 28 28 H 1.08999 * 109.46464 * 59.99965 * 1 2 3 29 29 H 1.08996 * 109.46867 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46981 * 286.93579 * 4 3 2 31 31 H 1.08998 * 109.47006 * 46.93400 * 4 3 2 32 32 H 1.09002 * 109.47168 * 166.93347 * 4 3 2 33 33 H 1.08997 * 113.46379 * 105.56449 * 5 3 2 34 34 H 1.09004 * 113.51778 * 335.13779 * 5 3 2 35 35 H 1.09002 * 109.47308 * 59.99459 * 9 7 6 36 36 H 1.09004 * 109.47175 * 299.99979 * 9 7 6 37 37 H 0.97003 * 120.00145 * 179.97438 * 15 14 12 38 38 H 1.07995 * 120.00249 * 359.97438 * 21 20 10 39 39 H 1.08003 * 120.00170 * 179.72082 * 22 21 20 40 40 H 1.07995 * 120.00383 * 179.97438 * 23 22 21 41 41 H 1.07999 * 119.99780 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.99938 * 180.10710 * 25 24 23 43 43 H 1.08994 * 113.46549 * 87.43702 * 26 6 5 44 44 H 1.08994 * 113.46725 * 217.88320 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.3796 2.2482 -1.0267 5 6 3.5453 1.3110 0.0006 6 7 3.4892 2.4310 0.9519 7 6 4.2834 3.4712 1.2743 8 8 5.3408 3.6271 0.7012 9 6 3.8575 4.4404 2.3467 10 6 4.9304 5.5178 2.5159 11 1 5.8922 5.0448 2.7145 12 6 5.0243 6.3358 1.2537 13 1 5.9742 6.4480 0.7522 14 6 3.8974 6.9410 0.7391 15 7 2.7604 6.8818 1.3974 16 14 3.9856 7.8452 -0.8933 17 1 4.4045 6.9009 -1.9601 18 1 2.6496 8.4037 -1.2225 19 1 4.9728 8.9500 -0.7944 20 6 4.5640 6.4150 3.6698 21 6 5.5558 7.0508 4.3931 22 6 5.2196 7.8743 5.4513 23 6 3.8916 8.0624 5.7860 24 6 2.8999 7.4259 5.0633 25 6 3.2360 6.6031 4.0046 26 6 2.1881 1.9132 1.4012 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7003 1.9616 -2.0283 31 1 0.2936 2.1834 -0.9605 32 1 1.6956 3.2713 -0.8228 33 1 3.9787 1.5806 -0.9624 34 1 3.9833 0.4057 0.4212 35 1 3.7276 3.9065 3.2882 36 1 2.9150 4.9074 2.0609 37 1 1.9677 7.3080 1.0356 38 1 6.5932 6.9043 4.1314 39 1 5.9947 8.3674 6.0192 40 1 3.6289 8.7053 6.6129 41 1 1.8624 7.5725 5.3250 42 1 2.4611 6.1071 3.4389 43 1 2.2675 1.1665 2.1912 44 1 1.4653 2.6960 1.6313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356617714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:56 Heat of formation + Delta-G solvation = -22.715202 kcal Electronic energy + Delta-G solvation = -25451.908279 eV Core-core repulsion = 21949.541173 eV Total energy + Delta-G solvation = -3502.367106 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 4.36 seconds Orbital eigenvalues (eV) -41.71329 -40.13395 -39.20787 -37.29952 -36.02112 -33.00428 -31.73115 -31.36346 -30.14729 -28.88015 -27.76665 -27.23659 -26.43374 -24.21627 -22.99610 -21.69782 -21.01654 -19.62224 -18.45432 -18.04740 -17.76222 -17.01941 -16.92491 -16.72219 -16.16690 -15.85512 -15.65966 -15.43794 -15.15727 -14.83441 -14.37732 -14.26803 -14.02977 -13.79621 -13.43598 -13.34470 -13.17362 -13.11852 -13.02321 -12.84500 -12.74177 -12.71741 -12.31632 -12.22015 -11.88577 -11.70599 -11.48454 -11.10365 -11.07377 -10.77378 -10.52830 -10.32637 -9.63934 -9.40475 -9.12708 -7.95774 -6.11896 0.88316 0.99532 1.35904 1.36245 1.45004 1.85558 1.90971 2.43616 2.77613 3.17984 3.22123 3.36836 3.56936 3.84593 4.08749 4.32193 4.41214 4.45631 4.48043 4.50467 4.52381 4.58096 4.61940 4.64818 4.69926 4.74528 4.79802 4.80990 4.87235 4.92969 4.98488 5.06346 5.14892 5.15215 5.39720 5.52888 5.60062 5.66957 5.87312 5.94086 6.08674 6.20245 6.34276 6.40963 6.57331 6.80668 6.83208 7.44257 7.50354 8.93389 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.004809 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.218802 B = 5820.750495 C = 6577.536306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.377 6.377 3 C 0.090 3.910 4 C -0.154 4.154 5 C 0.108 3.892 6 N -0.657 5.657 7 C 0.552 3.448 8 O -0.572 6.572 9 C -0.116 4.116 10 C 0.087 3.913 11 H 0.013 0.987 12 C -0.494 4.494 13 H 0.026 0.974 14 C 0.037 3.963 15 N -0.883 5.883 16 Si 0.928 3.072 17 H -0.290 1.290 18 H -0.272 1.272 19 H -0.282 1.282 20 C -0.051 4.051 21 C -0.152 4.152 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.081 4.081 26 C 0.083 3.917 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.263 0.737 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.105 0.895 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 -9.660 2.851 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.295 6.295 3 C 0.049 3.951 4 C -0.211 4.211 5 C -0.015 4.015 6 N -0.395 5.395 7 C 0.345 3.655 8 O -0.450 6.450 9 C -0.156 4.156 10 C 0.068 3.932 11 H 0.031 0.969 12 C -0.532 4.532 13 H 0.045 0.955 14 C -0.163 4.163 15 N -0.522 5.522 16 Si 0.755 3.245 17 H -0.217 1.217 18 H -0.197 1.197 19 H -0.208 1.208 20 C -0.051 4.051 21 C -0.171 4.171 22 C -0.158 4.158 23 C -0.166 4.166 24 C -0.164 4.164 25 C -0.099 4.099 26 C -0.040 4.040 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.143 0.857 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.123 0.877 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.963 -9.475 2.570 13.293 hybrid contribution 0.394 0.876 -1.261 1.585 sum -8.569 -8.599 1.309 12.210 Atomic orbital electron populations 1.23049 0.79199 1.04214 1.01348 1.87918 1.21874 1.24972 1.94777 1.22916 0.92862 0.84519 0.94799 1.21952 1.02434 0.98245 0.98492 1.23059 0.94624 0.89733 0.94070 1.49387 1.23299 1.25523 1.41325 1.20821 0.81828 0.79308 0.83566 1.90601 1.25140 1.74047 1.55235 1.21684 1.05085 0.94391 0.94454 1.17540 0.92675 0.91178 0.91776 0.96884 1.20902 0.94124 1.30646 1.07517 0.95523 1.25209 0.95610 0.96675 0.98803 1.69742 1.00165 1.44823 1.37462 0.86097 0.77386 0.78823 0.82150 1.21687 1.19681 1.20807 1.20259 0.93905 0.97831 0.93139 1.21073 0.98622 0.99866 0.97495 1.21158 0.97121 0.99518 0.97953 1.21209 0.92759 1.01397 1.01194 1.21366 0.99607 0.98735 0.96651 1.21309 0.96140 0.98245 0.94218 1.23804 0.84012 0.98078 0.98086 0.92864 0.92621 0.87747 0.90771 0.88915 0.92968 0.91322 0.88311 0.91174 0.85730 0.92714 0.88007 0.84985 0.84512 0.85434 0.85222 0.87713 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.36 113.37 1.17 1.42 16 2 O -0.38 -8.06 10.71 -148.98 -1.60 -9.66 16 3 C 0.09 2.19 1.56 -10.37 -0.02 2.17 16 4 C -0.15 -3.63 8.97 71.98 0.65 -2.99 16 5 C 0.11 3.22 8.04 83.19 0.67 3.89 16 6 N -0.66 -23.56 3.50 -858.12 -3.00 -26.56 16 7 C 0.55 25.39 7.83 87.66 0.69 26.07 16 8 O -0.57 -31.31 15.76 -3.04 -0.05 -31.36 16 9 C -0.12 -5.24 3.91 29.84 0.12 -5.13 16 10 C 0.09 4.46 1.97 -12.29 -0.02 4.43 16 11 H 0.01 0.69 7.91 -2.39 -0.02 0.67 16 12 C -0.49 -28.00 7.27 25.60 0.19 -27.81 16 13 H 0.03 1.62 7.82 -2.91 -0.02 1.60 16 14 C 0.04 1.97 5.13 84.65 0.43 2.40 16 15 N -0.88 -44.80 7.97 21.45 0.17 -44.63 16 16 Si 0.93 44.63 29.54 68.60 2.03 46.66 16 17 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 20 C -0.05 -2.38 4.69 -19.87 -0.09 -2.47 16 21 C -0.15 -6.58 9.71 22.27 0.22 -6.37 16 22 C -0.14 -5.07 10.05 22.27 0.22 -4.85 16 23 C -0.15 -5.04 10.05 22.27 0.22 -4.81 16 24 C -0.15 -5.39 10.05 22.27 0.22 -5.16 16 25 C -0.08 -3.49 7.46 22.27 0.17 -3.32 16 26 C 0.08 2.18 7.82 83.27 0.65 2.83 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.71 6.36 -2.39 -0.02 0.69 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.68 6.12 -2.39 -0.01 1.67 16 32 H 0.05 1.56 7.94 -2.39 -0.02 1.54 16 33 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 34 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 35 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.13 5.83 4.70 -2.39 -0.01 5.82 16 37 H 0.26 12.85 8.31 -92.71 -0.77 12.08 16 38 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 40 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 41 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.13 5.77 5.17 -2.91 -0.02 5.75 16 43 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.09 2.17 8.13 -2.39 -0.02 2.15 16 Total: -1.00 -66.59 355.27 4.02 -62.57 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.98 Total: 22.66 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 5.48 Total: -19.68 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -2.83 Total: -71.19 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.64 Total: -41.02 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -66.59 4.02 -62.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356617714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.853 kcal (2) G-P(sol) polarization free energy of solvation -66.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.36 seconds