Wall clock time and date at job start Tue Mar 31 2020 07:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 119.99645 * 2 1 4 4 O 1.21690 * 119.99712 * 180.02562 * 3 2 1 5 5 C 1.46368 * 120.00592 * 359.97438 * 3 2 1 6 6 H 1.08005 * 119.99700 * 0.02562 * 5 3 2 7 7 C 1.40046 * 120.00386 * 180.27720 * 5 3 2 8 8 N 1.30674 * 119.99704 * 359.72473 * 7 5 3 9 9 Si 1.86797 * 120.00279 * 179.72791 * 7 5 3 10 10 H 1.48507 * 109.47063 * 59.99610 * 9 7 5 11 11 H 1.48496 * 109.47456 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47060 * 299.99789 * 9 7 5 13 13 C 1.46497 * 120.00124 * 180.02562 * 2 1 3 14 14 H 1.08995 * 112.85055 * 137.10617 * 13 2 1 15 15 C 1.53782 * 113.61234 * 5.91313 * 13 2 1 16 16 C 1.53785 * 87.08217 * 270.88198 * 15 13 2 17 17 H 1.09007 * 113.60792 * 89.11782 * 16 15 13 18 18 O 1.42901 * 113.61695 * 220.01649 * 16 15 13 19 19 C 1.35894 * 117.00115 * 274.36119 * 18 16 15 20 20 C 1.38735 * 120.05496 * 184.85894 * 19 18 16 21 21 C 1.38148 * 119.94122 * 179.69852 * 20 19 18 22 22 C 1.38257 * 120.05606 * 0.60372 * 21 20 19 23 23 C 1.38264 * 120.11428 * 359.67449 * 22 21 20 24 24 C 1.38145 * 120.05515 * 0.02562 * 23 22 21 25 25 C 1.53782 * 113.61377 * 268.30749 * 13 2 1 26 26 C 1.52999 * 113.61329 * 203.66156 * 25 13 2 27 27 C 1.52998 * 113.61307 * 334.56440 * 25 13 2 28 28 H 1.08995 * 109.47020 * 84.77787 * 1 2 3 29 29 H 1.09003 * 109.47223 * 204.78032 * 1 2 3 30 30 H 1.09007 * 109.47153 * 324.77713 * 1 2 3 31 31 H 0.96996 * 119.99672 * 180.02562 * 8 7 5 32 32 H 1.08998 * 113.61926 * 25.43125 * 15 13 2 33 33 H 1.09006 * 113.61469 * 156.25334 * 15 13 2 34 34 H 1.08003 * 120.02739 * 0.02562 * 20 19 18 35 35 H 1.08008 * 119.97013 * 180.27614 * 21 20 19 36 36 H 1.08005 * 119.94191 * 179.69540 * 22 21 20 37 37 H 1.08000 * 119.97425 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.03059 * 180.02562 * 24 23 22 39 39 H 1.09006 * 109.46918 * 59.99878 * 26 25 13 40 40 H 1.09003 * 109.47010 * 179.97438 * 26 25 13 41 41 H 1.08998 * 109.47566 * 300.00107 * 26 25 13 42 42 H 1.09004 * 109.47179 * 60.00432 * 27 25 13 43 43 H 1.09005 * 109.47001 * 180.02562 * 27 25 13 44 44 H 1.08997 * 109.47234 * 299.99817 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1673 -0.0005 5 6 1.4071 2.4349 -0.0006 6 1 0.3270 2.4348 -0.0006 7 6 2.1073 3.6477 -0.0064 8 7 3.4140 3.6477 -0.0060 9 14 1.1733 5.2654 -0.0148 10 1 0.3191 5.3501 1.1970 11 1 2.1382 6.3941 -0.0196 12 1 0.3199 5.3380 -1.2280 13 6 2.1976 -1.2687 -0.0006 14 1 3.0464 -1.2670 -0.6842 15 6 1.2918 -2.5029 -0.1463 16 6 1.1819 -2.5058 1.3876 17 1 0.3591 -1.9000 1.7675 18 8 1.2209 -3.8137 1.9619 19 6 0.0441 -4.4888 2.0395 20 6 -0.0098 -5.7203 2.6761 21 6 -1.2087 -6.4017 2.7591 22 6 -2.3516 -5.8632 2.1976 23 6 -2.2994 -4.6387 1.5576 24 6 -1.1043 -3.9504 1.4773 25 6 2.5416 -1.7820 1.4076 26 6 3.7409 -2.7316 1.4378 27 6 2.6329 -0.6738 2.4585 28 1 -0.3633 0.0935 -1.0234 29 1 -0.3634 -0.9331 0.4307 30 1 -0.3634 0.8396 0.5927 31 1 3.8989 4.4877 -0.0097 32 1 0.3484 -2.2951 -0.6512 33 1 1.8047 -3.3757 -0.5502 34 1 0.8836 -6.1435 3.1110 35 1 -1.2521 -7.3584 3.2585 36 1 -3.2869 -6.3998 2.2593 37 1 -3.1934 -4.2203 1.1195 38 1 -1.0640 -2.9938 0.9777 39 1 4.6219 -2.2164 1.0550 40 1 3.9247 -3.0522 2.4632 41 1 3.5307 -3.6022 0.8166 42 1 1.6755 -0.1569 2.5257 43 1 2.8791 -1.1103 3.4265 44 1 3.4094 0.0355 2.1722 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366184927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:40 Heat of formation + Delta-G solvation = -18.291083 kcal Electronic energy + Delta-G solvation = -25594.354544 eV Core-core repulsion = 22092.179282 eV Total energy + Delta-G solvation = -3502.175262 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87010 -39.21906 -37.20945 -35.99122 -33.14905 -32.48850 -31.11371 -30.05449 -29.74426 -26.97467 -26.76275 -26.02101 -24.20381 -22.65547 -22.03421 -21.75716 -19.82911 -18.25964 -17.63412 -16.65255 -16.12069 -15.86111 -15.42420 -15.27228 -14.90203 -14.51808 -14.21257 -14.06492 -13.76996 -13.45562 -13.03831 -12.92285 -12.65540 -12.42227 -12.21085 -11.93781 -11.71896 -11.66677 -11.56670 -11.37548 -11.25861 -11.13009 -10.94858 -10.90802 -10.58595 -10.47070 -10.28968 -10.14551 -9.96314 -9.70695 -9.06775 -8.87401 -8.16284 -7.62850 -7.23651 -6.22908 -4.68568 1.27614 1.41476 3.12478 3.18118 3.19225 3.33487 3.74724 4.02633 4.38174 4.50544 4.60495 4.70454 4.82033 4.87541 5.02816 5.06948 5.13515 5.31235 5.36526 5.54398 5.61447 5.70955 5.75176 5.81148 5.83485 5.93218 6.03544 6.06549 6.16256 6.27036 6.29411 6.34423 6.37177 6.43665 6.45061 6.46885 6.50308 6.57924 6.72821 6.84017 7.04205 7.40332 7.52417 7.58160 8.08858 8.30300 8.98587 9.37615 10.54088 10.72816 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023270 B = 0.003782 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.966693 B = 7401.390367 C = 8160.464477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.631 5.631 3 C 0.562 3.438 4 O -0.570 6.570 5 C -0.543 4.543 6 H 0.070 0.930 7 C 0.088 3.912 8 N -0.766 5.766 9 Si 0.905 3.095 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.268 1.268 13 C 0.155 3.845 14 H 0.088 0.912 15 C -0.171 4.171 16 C 0.065 3.935 17 H 0.097 0.903 18 O -0.300 6.300 19 C 0.139 3.861 20 C -0.160 4.160 21 C -0.084 4.084 22 C -0.168 4.168 23 C -0.081 4.081 24 C -0.207 4.207 25 C -0.076 4.076 26 C -0.116 4.116 27 C -0.127 4.127 28 H 0.035 0.965 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.269 0.731 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.054 -15.341 3.650 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.369 5.369 3 C 0.368 3.632 4 O -0.452 6.452 5 C -0.580 4.580 6 H 0.088 0.912 7 C -0.132 4.132 8 N -0.394 5.394 9 Si 0.730 3.270 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.193 1.193 13 C 0.049 3.951 14 H 0.106 0.894 15 C -0.209 4.209 16 C 0.009 3.991 17 H 0.114 0.886 18 O -0.213 6.213 19 C 0.093 3.907 20 C -0.179 4.179 21 C -0.102 4.102 22 C -0.186 4.186 23 C -0.099 4.099 24 C -0.226 4.226 25 C -0.078 4.078 26 C -0.174 4.174 27 C -0.184 4.184 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.995 -15.247 3.692 17.607 hybrid contribution -0.908 0.924 -0.117 1.300 sum -8.903 -14.323 3.576 17.240 Atomic orbital electron populations 1.21515 0.82647 1.00476 1.00250 1.47812 1.04613 1.04370 1.80067 1.18151 0.86978 0.81764 0.76294 1.90604 1.13870 1.86059 1.54674 1.20952 0.93621 0.89209 1.54219 0.91175 1.25709 0.94605 1.00227 0.92625 1.70001 1.07000 1.27407 1.35016 0.86473 0.79888 0.81206 0.79452 1.19286 1.20560 1.19289 1.21346 0.94912 0.83921 0.94888 0.89389 1.23948 1.01559 0.99497 0.95936 1.24626 1.00486 0.81011 0.92942 0.88595 1.86162 1.28188 1.29706 1.77221 1.19129 0.85475 0.92084 0.94049 1.20459 0.99054 0.94417 1.03941 1.20923 0.91965 0.99172 0.98141 1.21000 0.98525 0.97013 1.02095 1.20962 0.97127 0.94506 0.97281 1.21394 0.93138 1.02339 1.05721 1.22564 0.92132 0.94833 0.98305 1.21393 0.96455 0.97831 1.01724 1.21620 1.03412 0.97453 0.95961 0.94626 0.93885 0.91272 0.92039 0.90418 0.88714 0.85480 0.85760 0.86278 0.86013 0.85410 0.92004 0.92559 0.92602 0.92603 0.94042 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 8.88 59.85 0.53 2.21 16 2 N -0.63 -13.51 2.23 -174.66 -0.39 -13.89 16 3 C 0.56 15.16 6.65 -12.99 -0.09 15.07 16 4 O -0.57 -17.45 13.89 5.20 0.07 -17.37 16 5 C -0.54 -14.72 8.73 -35.64 -0.31 -15.03 16 6 H 0.07 1.74 6.11 -52.48 -0.32 1.42 16 7 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16 8 N -0.77 -22.31 11.83 55.55 0.66 -21.66 16 9 Si 0.91 19.69 29.56 -169.99 -5.02 14.67 16 10 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.16 2.93 3.51 -67.12 -0.24 2.70 16 14 H 0.09 1.83 7.93 -51.93 -0.41 1.42 16 15 C -0.17 -2.55 6.19 -25.92 -0.16 -2.71 16 16 C 0.06 0.99 2.11 -25.77 -0.05 0.93 16 17 H 0.10 1.48 5.35 -51.93 -0.28 1.21 16 18 O -0.30 -4.46 9.24 -19.41 -0.18 -4.64 16 19 C 0.14 1.88 6.67 -39.21 -0.26 1.62 16 20 C -0.16 -1.90 9.99 -39.43 -0.39 -2.29 16 21 C -0.08 -0.84 10.04 -39.61 -0.40 -1.24 16 22 C -0.17 -1.66 10.04 -39.56 -0.40 -2.06 16 23 C -0.08 -0.87 10.04 -39.61 -0.40 -1.26 16 24 C -0.21 -2.59 8.92 -39.43 -0.35 -2.94 16 25 C -0.08 -1.32 1.35 -153.55 -0.21 -1.53 16 26 C -0.12 -1.80 8.46 37.16 0.31 -1.49 16 27 C -0.13 -2.45 7.98 37.16 0.30 -2.15 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.62 3.96 -51.93 -0.21 0.42 16 30 H 0.07 1.26 6.40 -51.93 -0.33 0.92 16 31 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 32 H 0.08 1.08 6.21 -51.93 -0.32 0.76 16 33 H 0.09 1.32 7.66 -51.93 -0.40 0.92 16 34 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 35 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.13 1.56 5.23 -52.49 -0.27 1.29 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.79 7.19 -51.93 -0.37 0.42 16 42 H 0.05 1.11 7.58 -51.93 -0.39 0.72 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.81 6.96 -51.93 -0.36 1.45 16 LS Contribution 346.81 15.07 5.23 5.23 Total: -1.00 -31.96 346.81 -8.03 -39.99 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.19 Total: 5.58 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -2.21 Total: -7.89 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.27 Total: -35.55 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.11 Total: -22.02 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.96 -8.03 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366184927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.699 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds