Wall clock time and date at job start Tue Mar 31 2020 07:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 119.99645 * 2 1 4 4 O 1.21690 * 119.99712 * 180.02562 * 3 2 1 5 5 C 1.46368 * 120.00592 * 359.97438 * 3 2 1 6 6 H 1.08005 * 119.99700 * 0.02562 * 5 3 2 7 7 C 1.40046 * 120.00386 * 180.27720 * 5 3 2 8 8 N 1.30674 * 119.99704 * 359.72473 * 7 5 3 9 9 Si 1.86797 * 120.00279 * 179.72791 * 7 5 3 10 10 H 1.48507 * 109.47063 * 59.99610 * 9 7 5 11 11 H 1.48496 * 109.47456 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47060 * 299.99789 * 9 7 5 13 13 C 1.46497 * 120.00124 * 180.02562 * 2 1 3 14 14 H 1.08995 * 112.85055 * 137.10617 * 13 2 1 15 15 C 1.53782 * 113.61234 * 5.91313 * 13 2 1 16 16 C 1.53785 * 87.08217 * 270.88198 * 15 13 2 17 17 H 1.09007 * 113.60792 * 89.11782 * 16 15 13 18 18 O 1.42901 * 113.61695 * 220.01649 * 16 15 13 19 19 C 1.35894 * 117.00115 * 274.36119 * 18 16 15 20 20 C 1.38735 * 120.05496 * 184.85894 * 19 18 16 21 21 C 1.38148 * 119.94122 * 179.69852 * 20 19 18 22 22 C 1.38257 * 120.05606 * 0.60372 * 21 20 19 23 23 C 1.38264 * 120.11428 * 359.67449 * 22 21 20 24 24 C 1.38145 * 120.05515 * 0.02562 * 23 22 21 25 25 C 1.53782 * 113.61377 * 268.30749 * 13 2 1 26 26 C 1.52999 * 113.61329 * 203.66156 * 25 13 2 27 27 C 1.52998 * 113.61307 * 334.56440 * 25 13 2 28 28 H 1.08995 * 109.47020 * 84.77787 * 1 2 3 29 29 H 1.09003 * 109.47223 * 204.78032 * 1 2 3 30 30 H 1.09007 * 109.47153 * 324.77713 * 1 2 3 31 31 H 0.96996 * 119.99672 * 180.02562 * 8 7 5 32 32 H 1.08998 * 113.61926 * 25.43125 * 15 13 2 33 33 H 1.09006 * 113.61469 * 156.25334 * 15 13 2 34 34 H 1.08003 * 120.02739 * 0.02562 * 20 19 18 35 35 H 1.08008 * 119.97013 * 180.27614 * 21 20 19 36 36 H 1.08005 * 119.94191 * 179.69540 * 22 21 20 37 37 H 1.08000 * 119.97425 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.03059 * 180.02562 * 24 23 22 39 39 H 1.09006 * 109.46918 * 59.99878 * 26 25 13 40 40 H 1.09003 * 109.47010 * 179.97438 * 26 25 13 41 41 H 1.08998 * 109.47566 * 300.00107 * 26 25 13 42 42 H 1.09004 * 109.47179 * 60.00432 * 27 25 13 43 43 H 1.09005 * 109.47001 * 180.02562 * 27 25 13 44 44 H 1.08997 * 109.47234 * 299.99817 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1673 -0.0005 5 6 1.4071 2.4349 -0.0006 6 1 0.3270 2.4348 -0.0006 7 6 2.1073 3.6477 -0.0064 8 7 3.4140 3.6477 -0.0060 9 14 1.1733 5.2654 -0.0148 10 1 0.3191 5.3501 1.1970 11 1 2.1382 6.3941 -0.0196 12 1 0.3199 5.3380 -1.2280 13 6 2.1976 -1.2687 -0.0006 14 1 3.0464 -1.2670 -0.6842 15 6 1.2918 -2.5029 -0.1463 16 6 1.1819 -2.5058 1.3876 17 1 0.3591 -1.9000 1.7675 18 8 1.2209 -3.8137 1.9619 19 6 0.0441 -4.4888 2.0395 20 6 -0.0098 -5.7203 2.6761 21 6 -1.2087 -6.4017 2.7591 22 6 -2.3516 -5.8632 2.1976 23 6 -2.2994 -4.6387 1.5576 24 6 -1.1043 -3.9504 1.4773 25 6 2.5416 -1.7820 1.4076 26 6 3.7409 -2.7316 1.4378 27 6 2.6329 -0.6738 2.4585 28 1 -0.3633 0.0935 -1.0234 29 1 -0.3634 -0.9331 0.4307 30 1 -0.3634 0.8396 0.5927 31 1 3.8989 4.4877 -0.0097 32 1 0.3484 -2.2951 -0.6512 33 1 1.8047 -3.3757 -0.5502 34 1 0.8836 -6.1435 3.1110 35 1 -1.2521 -7.3584 3.2585 36 1 -3.2869 -6.3998 2.2593 37 1 -3.1934 -4.2203 1.1195 38 1 -1.0640 -2.9938 0.9777 39 1 4.6219 -2.2164 1.0550 40 1 3.9247 -3.0522 2.4632 41 1 3.5307 -3.6022 0.8166 42 1 1.6755 -0.1569 2.5257 43 1 2.8791 -1.1103 3.4265 44 1 3.4094 0.0355 2.1722 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366184927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:36 Heat of formation + Delta-G solvation = -36.524874 kcal Electronic energy + Delta-G solvation = -25595.145221 eV Core-core repulsion = 22092.179282 eV Total energy + Delta-G solvation = -3502.965938 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 4.48 seconds Orbital eigenvalues (eV) -42.15745 -40.33123 -38.73242 -37.39499 -34.88077 -34.56042 -32.01617 -31.40578 -30.64715 -28.64174 -28.28825 -27.75726 -25.54669 -23.64641 -23.39574 -22.78399 -21.51245 -19.27634 -19.12760 -18.44041 -17.69725 -17.01645 -16.76487 -16.55249 -16.26933 -15.92438 -15.75351 -15.28365 -15.00658 -14.53163 -14.29034 -14.24903 -14.09403 -13.94228 -13.58742 -13.44707 -13.18054 -13.01690 -12.95642 -12.83252 -12.69819 -12.61154 -12.40726 -12.21365 -12.16832 -12.03651 -11.78787 -11.61972 -11.34588 -11.05444 -10.88668 -9.88535 -9.74184 -9.08244 -9.01542 -8.26192 -6.81242 0.45938 0.56204 1.39544 1.42323 1.53365 2.22658 2.25038 2.48913 2.75282 2.91349 3.30251 3.36826 3.56925 3.78041 3.83443 4.00444 4.04029 4.22370 4.27037 4.34209 4.43089 4.49236 4.56084 4.59516 4.67559 4.72469 4.75862 4.79969 4.88757 4.89853 4.99897 5.01528 5.04894 5.12264 5.15499 5.35358 5.37103 5.41330 5.46953 5.56091 5.66368 5.76655 5.95043 6.15445 6.43632 6.54730 6.90588 7.45214 8.52141 8.71165 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023270 B = 0.003782 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.966693 B = 7401.390367 C = 8160.464477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.629 5.629 3 C 0.550 3.450 4 O -0.620 6.620 5 C -0.570 4.570 6 H 0.090 0.910 7 C 0.031 3.969 8 N -0.820 5.820 9 Si 0.990 3.010 10 H -0.255 1.255 11 H -0.277 1.277 12 H -0.255 1.255 13 C 0.137 3.863 14 H 0.058 0.942 15 C -0.149 4.149 16 C 0.085 3.915 17 H 0.096 0.904 18 O -0.309 6.309 19 C 0.109 3.891 20 C -0.171 4.171 21 C -0.083 4.083 22 C -0.165 4.165 23 C -0.087 4.087 24 C -0.219 4.219 25 C -0.082 4.082 26 C -0.110 4.110 27 C -0.116 4.116 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.272 0.728 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.127 0.873 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.060 0.940 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.412 -17.039 4.023 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.365 5.365 3 C 0.355 3.645 4 O -0.506 6.506 5 C -0.606 4.606 6 H 0.108 0.892 7 C -0.184 4.184 8 N -0.450 5.450 9 Si 0.810 3.190 10 H -0.179 1.179 11 H -0.202 1.202 12 H -0.179 1.179 13 C 0.032 3.968 14 H 0.076 0.924 15 C -0.187 4.187 16 C 0.029 3.971 17 H 0.113 0.887 18 O -0.223 6.223 19 C 0.064 3.936 20 C -0.189 4.189 21 C -0.101 4.101 22 C -0.183 4.183 23 C -0.105 4.105 24 C -0.238 4.238 25 C -0.084 4.084 26 C -0.168 4.168 27 C -0.174 4.174 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.150 0.850 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.407 -17.001 4.066 20.873 hybrid contribution 0.084 1.289 -0.193 1.306 sum -11.323 -15.712 3.873 19.750 Atomic orbital electron populations 1.21689 0.80093 1.02088 1.01190 1.47547 1.06249 1.03976 1.78748 1.18434 0.86586 0.83570 0.75868 1.90558 1.16019 1.87325 1.56717 1.21483 0.94756 0.89926 1.54429 0.89240 1.26903 0.95430 1.04696 0.91370 1.70185 1.09381 1.28734 1.36677 0.85186 0.78319 0.75295 0.80247 1.17893 1.20225 1.17869 1.21460 0.95237 0.84428 0.95686 0.92396 1.23846 1.01252 0.97444 0.96114 1.24185 0.98421 0.81519 0.92945 0.88670 1.86112 1.29379 1.29117 1.77664 1.19394 0.85287 0.92955 0.95951 1.20705 1.00222 0.94113 1.03903 1.21300 0.91240 1.00010 0.97575 1.21409 0.99604 0.96648 1.00642 1.21286 0.97240 0.94803 0.97146 1.21493 0.93584 1.02618 1.06104 1.22570 0.94562 0.94867 0.96393 1.21346 0.95066 0.97694 1.02650 1.21465 1.01007 0.97235 0.97674 0.93455 0.90469 0.91946 0.91805 0.88787 0.87265 0.84951 0.82975 0.83541 0.83917 0.85548 0.93574 0.91483 0.90978 0.93766 0.92081 0.94917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.14 8.88 127.77 1.13 4.28 16 2 N -0.63 -27.57 2.23 -824.73 -1.84 -29.41 16 3 C 0.55 30.99 6.65 86.36 0.57 31.56 16 4 O -0.62 -40.47 13.89 -4.32 -0.06 -40.53 16 5 C -0.57 -31.56 8.73 24.83 0.22 -31.34 16 6 H 0.09 4.43 6.11 -2.91 -0.02 4.41 16 7 C 0.03 1.72 5.50 85.30 0.47 2.19 16 8 N -0.82 -49.93 11.83 21.84 0.26 -49.67 16 9 Si 0.99 40.69 29.56 68.60 2.03 42.72 16 10 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 11 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16 12 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 13 C 0.14 5.31 3.51 45.52 0.16 5.47 16 14 H 0.06 2.56 7.93 -2.39 -0.02 2.54 16 15 C -0.15 -4.22 6.19 31.12 0.19 -4.03 16 16 C 0.09 2.49 2.11 31.21 0.07 2.56 16 17 H 0.10 2.80 5.35 -2.38 -0.01 2.79 16 18 O -0.31 -8.70 9.24 -92.35 -0.85 -9.56 16 19 C 0.11 2.73 6.67 22.51 0.15 2.88 16 20 C -0.17 -3.64 9.99 22.37 0.22 -3.42 16 21 C -0.08 -1.38 10.04 22.25 0.22 -1.16 16 22 C -0.17 -2.61 10.04 22.28 0.22 -2.39 16 23 C -0.09 -1.57 10.04 22.25 0.22 -1.35 16 24 C -0.22 -4.92 8.92 22.37 0.20 -4.73 16 25 C -0.08 -2.88 1.35 -51.56 -0.07 -2.95 16 26 C -0.11 -3.44 8.46 71.98 0.61 -2.83 16 27 C -0.12 -4.68 7.98 71.98 0.57 -4.11 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 2.08 3.96 -2.39 -0.01 2.07 16 30 H 0.06 2.22 6.40 -2.38 -0.02 2.20 16 31 H 0.27 15.15 8.29 -92.71 -0.77 14.39 16 32 H 0.09 2.38 6.21 -2.39 -0.01 2.37 16 33 H 0.11 2.83 7.66 -2.38 -0.02 2.81 16 34 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.13 2.76 5.23 -2.91 -0.02 2.75 16 39 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 1.99 7.19 -2.39 -0.02 1.98 16 42 H 0.04 1.82 7.58 -2.38 -0.02 1.80 16 43 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 44 H 0.03 1.60 6.96 -2.39 -0.02 1.58 16 Total: -1.00 -74.01 346.81 5.71 -68.29 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 1.01 Total: 27.52 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.17 Total: -9.36 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -1.58 Total: -79.08 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.91 Total: -50.09 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -74.01 5.71 -68.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366184927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.769 kcal (2) G-P(sol) polarization free energy of solvation -74.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.48 seconds