Wall clock time and date at job start Tue Mar 31 2020 10:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47104 * 2 1 4 4 C 1.53004 * 109.47180 * 240.00143 * 2 1 3 5 5 C 1.50693 * 109.47027 * 60.00035 * 4 2 1 6 6 H 1.07998 * 120.00470 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99984 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99777 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00338 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47005 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47234 * 119.99550 * 9 7 5 12 12 H 1.48494 * 109.47596 * 240.00005 * 9 7 5 13 13 C 1.52999 * 109.47140 * 119.99696 * 2 1 3 14 14 N 1.46497 * 109.47355 * 300.00122 * 13 2 1 15 15 C 1.34777 * 119.99983 * 179.97438 * 14 13 2 16 16 O 1.21280 * 119.99942 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99934 * 180.02562 * 15 14 13 18 18 H 1.09001 * 110.83335 * 62.25836 * 17 15 14 19 19 C 1.54706 * 110.94018 * 298.54183 * 17 15 14 20 20 O 1.43766 * 102.79333 * 267.12120 * 19 17 15 21 21 C 1.36135 * 109.25562 * 332.33352 * 20 19 17 22 22 C 1.39295 * 129.88284 * 198.45766 * 21 20 19 23 23 C 1.37928 * 120.24031 * 180.58776 * 22 21 20 24 24 C 1.38285 * 120.35267 * 0.09038 * 23 22 21 25 25 C 1.38349 * 119.76793 * 359.85101 * 24 23 22 26 26 C 1.37748 * 119.97686 * 359.94996 * 25 24 23 27 27 H 1.08998 * 109.47286 * 300.00135 * 1 2 3 28 28 H 1.09007 * 109.46966 * 59.99946 * 1 2 3 29 29 H 1.08994 * 109.47059 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47090 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47401 * 299.99838 * 3 2 1 32 32 H 1.09003 * 109.47571 * 60.00378 * 3 2 1 33 33 H 1.08999 * 109.47224 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.46847 * 299.99947 * 4 2 1 35 35 H 0.97000 * 119.99794 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.46992 * 179.97438 * 13 2 1 37 37 H 1.09003 * 109.46928 * 60.00027 * 13 2 1 38 38 H 0.97001 * 120.00003 * 359.97438 * 14 13 2 39 39 H 1.08996 * 110.74961 * 148.79519 * 19 17 15 40 40 H 1.09002 * 110.74709 * 25.44614 * 19 17 15 41 41 H 1.08003 * 119.87603 * 0.30717 * 22 21 20 42 42 H 1.07996 * 119.82310 * 180.09513 * 23 22 21 43 43 H 1.08001 * 120.11639 * 179.82967 * 24 23 22 44 44 H 1.07996 * 120.01670 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4821 -3.7319 8 7 2.6256 -1.5520 -3.8526 9 14 1.2472 0.3980 -5.2572 10 1 0.4227 1.5652 -4.8530 11 1 2.4019 0.8646 -6.0660 12 1 0.4219 -0.5355 -6.0650 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4913 3.6695 16 8 2.5734 -1.4779 3.7808 17 6 1.3741 0.2187 4.9000 18 1 0.2851 0.1970 4.9423 19 6 1.9006 1.6725 4.9533 20 8 3.1005 1.5480 5.7354 21 6 2.9790 0.4855 6.5779 22 6 3.6943 0.1744 7.7320 23 6 3.4093 -0.9764 8.4368 24 6 2.4131 -1.8323 8.0040 25 6 1.6971 -1.5299 6.8594 26 6 1.9773 -0.3791 6.1562 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 -0.7208 -1.2495 34 1 1.6766 -1.7489 -1.2493 35 1 2.8599 -1.8834 -4.7336 36 1 3.1300 -0.7216 1.2490 37 1 1.6766 -1.7489 1.2493 38 1 0.9943 0.7583 2.3564 39 1 1.1824 2.3253 5.4494 40 1 2.1285 2.0376 3.9519 41 1 4.4780 0.8345 8.0735 42 1 3.9670 -1.2102 9.3316 43 1 2.1950 -2.7337 8.5574 44 1 0.9186 -2.1957 6.5176 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367794194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:49 Heat of formation + Delta-G solvation = -55.091142 kcal Electronic energy + Delta-G solvation = -24602.796265 eV Core-core repulsion = 21099.025233 eV Total energy + Delta-G solvation = -3503.771032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62914 -39.26814 -37.56559 -37.10214 -33.73728 -32.97749 -32.05974 -30.25204 -29.56057 -27.16538 -26.56533 -26.31447 -24.31430 -23.10534 -22.50114 -21.93619 -20.22507 -18.57883 -17.60679 -17.08216 -16.82152 -16.33354 -16.19106 -15.63116 -15.23358 -14.88487 -14.53278 -14.21811 -13.80765 -13.60217 -13.51634 -13.30685 -13.02031 -12.82107 -12.73703 -12.32776 -12.09990 -11.94150 -11.79889 -11.38491 -11.19112 -11.05967 -10.99764 -10.86363 -10.68599 -10.45048 -10.27803 -9.92564 -9.88735 -9.25296 -9.05675 -8.94214 -8.80950 -8.38821 -8.33212 -6.02526 -4.04008 1.09173 1.23041 2.60937 3.07053 3.20430 3.28234 3.36528 3.38531 3.67016 3.98419 4.28037 4.42844 4.59809 4.70435 4.87381 4.94566 5.09650 5.12939 5.20653 5.33027 5.35087 5.43956 5.46523 5.57658 5.69460 5.81485 6.10769 6.12165 6.16616 6.22867 6.23965 6.31171 6.33844 6.39657 6.49230 6.58189 6.69663 6.97662 7.01235 7.03076 7.08063 7.60556 7.64005 7.72869 7.96010 8.31391 8.38101 9.01016 9.59359 11.08970 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.035035 B = 0.002743 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.015398 B =10204.223878 C =10457.007633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.128 3.872 14 N -0.720 5.720 15 C 0.517 3.483 16 O -0.527 6.527 17 C -0.104 4.104 18 H 0.123 0.877 19 C 0.062 3.938 20 O -0.300 6.300 21 C 0.111 3.889 22 C -0.142 4.142 23 C -0.083 4.083 24 C -0.151 4.151 25 C -0.051 4.051 26 C -0.147 4.147 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.260 0.740 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.981 5.432 22.905 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.006 3.994 14 N -0.372 5.372 15 C 0.301 3.699 16 O -0.403 6.403 17 C -0.126 4.126 18 H 0.141 0.859 19 C -0.014 4.014 20 O -0.213 6.213 21 C 0.066 3.934 22 C -0.160 4.160 23 C -0.101 4.101 24 C -0.169 4.169 25 C -0.069 4.069 26 C -0.148 4.148 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.208 4.758 22.788 23.499 hybrid contribution -0.714 0.652 -1.203 1.543 sum -3.921 5.410 21.585 22.596 Atomic orbital electron populations 1.21763 0.95247 1.01182 1.00231 1.20909 0.95475 0.95868 0.95017 1.21766 1.00628 0.95847 1.00205 1.19096 0.96396 0.95232 0.89466 1.21206 1.31163 1.12073 0.90483 0.92195 1.25021 0.95315 0.95074 0.99125 1.69974 1.36985 1.23002 1.23371 0.86591 0.78616 0.79661 0.83437 1.19802 1.21118 1.21124 1.21660 0.99012 0.96035 0.82715 1.46182 1.53269 1.32023 1.05730 1.20042 0.80920 0.84902 0.84052 1.90727 1.37075 1.25979 1.86535 1.21608 1.03111 0.95462 0.92379 0.85932 1.23858 0.85721 0.94539 0.97259 1.86853 1.37893 1.46882 1.49707 1.19572 0.95396 0.87493 0.90962 1.20227 1.02605 0.99703 0.93491 1.20867 0.96957 0.93118 0.99176 1.21016 0.97660 1.00501 0.97712 1.20294 0.98817 0.94142 0.93663 1.20158 1.00921 0.97637 0.96117 0.95305 0.91353 0.93345 0.93297 0.91338 0.95351 0.96323 0.96334 0.93064 0.91733 0.91733 0.76737 0.89214 0.87070 0.85451 0.85175 0.85434 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 2 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 3 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.38 7.65 -34.44 -0.26 -13.65 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.13 2.23 4.56 -4.04 -0.02 2.21 16 14 N -0.72 -9.96 4.69 -60.29 -0.28 -10.25 16 15 C 0.52 7.65 7.15 -10.99 -0.08 7.57 16 16 O -0.53 -10.19 16.15 5.56 0.09 -10.10 16 17 C -0.10 -1.14 3.52 -91.56 -0.32 -1.47 16 18 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 19 C 0.06 0.59 7.53 38.05 0.29 0.87 16 20 O -0.30 -3.86 11.10 -20.17 -0.22 -4.09 16 21 C 0.11 1.42 7.04 -38.95 -0.27 1.15 16 22 C -0.14 -1.55 10.06 -39.30 -0.40 -1.95 16 23 C -0.08 -0.78 10.02 -39.68 -0.40 -1.18 16 24 C -0.15 -1.47 10.07 -39.52 -0.40 -1.87 16 25 C -0.05 -0.58 10.03 -39.72 -0.40 -0.98 16 26 C -0.15 -1.84 4.94 -104.10 -0.51 -2.35 16 27 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 28 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 32 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.40 4.40 5.99 -40.82 -0.24 4.15 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.11 0.96 7.53 -51.93 -0.39 0.57 16 41 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 42 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -32.94 356.63 -8.34 -41.28 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.54 Total: 1.87 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.47 Total: -14.54 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.45 Total: -35.79 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.13 Total: -14.19 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.94 -8.34 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367794194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.816 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds