Wall clock time and date at job start Tue Mar 31 2020 10:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47104 * 2 1 4 4 C 1.53004 * 109.47180 * 240.00143 * 2 1 3 5 5 C 1.50693 * 109.47027 * 60.00035 * 4 2 1 6 6 H 1.07998 * 120.00470 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99984 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99777 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00338 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47005 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47234 * 119.99550 * 9 7 5 12 12 H 1.48494 * 109.47596 * 240.00005 * 9 7 5 13 13 C 1.52999 * 109.47140 * 119.99696 * 2 1 3 14 14 N 1.46497 * 109.47355 * 300.00122 * 13 2 1 15 15 C 1.34777 * 119.99983 * 179.97438 * 14 13 2 16 16 O 1.21280 * 119.99942 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99934 * 180.02562 * 15 14 13 18 18 H 1.09001 * 110.83335 * 62.25836 * 17 15 14 19 19 C 1.54706 * 110.94018 * 298.54183 * 17 15 14 20 20 O 1.43766 * 102.79333 * 267.12120 * 19 17 15 21 21 C 1.36135 * 109.25562 * 332.33352 * 20 19 17 22 22 C 1.39295 * 129.88284 * 198.45766 * 21 20 19 23 23 C 1.37928 * 120.24031 * 180.58776 * 22 21 20 24 24 C 1.38285 * 120.35267 * 0.09038 * 23 22 21 25 25 C 1.38349 * 119.76793 * 359.85101 * 24 23 22 26 26 C 1.37748 * 119.97686 * 359.94996 * 25 24 23 27 27 H 1.08998 * 109.47286 * 300.00135 * 1 2 3 28 28 H 1.09007 * 109.46966 * 59.99946 * 1 2 3 29 29 H 1.08994 * 109.47059 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47090 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47401 * 299.99838 * 3 2 1 32 32 H 1.09003 * 109.47571 * 60.00378 * 3 2 1 33 33 H 1.08999 * 109.47224 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.46847 * 299.99947 * 4 2 1 35 35 H 0.97000 * 119.99794 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.46992 * 179.97438 * 13 2 1 37 37 H 1.09003 * 109.46928 * 60.00027 * 13 2 1 38 38 H 0.97001 * 120.00003 * 359.97438 * 14 13 2 39 39 H 1.08996 * 110.74961 * 148.79519 * 19 17 15 40 40 H 1.09002 * 110.74709 * 25.44614 * 19 17 15 41 41 H 1.08003 * 119.87603 * 0.30717 * 22 21 20 42 42 H 1.07996 * 119.82310 * 180.09513 * 23 22 21 43 43 H 1.08001 * 120.11639 * 179.82967 * 24 23 22 44 44 H 1.07996 * 120.01670 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4821 -3.7319 8 7 2.6256 -1.5520 -3.8526 9 14 1.2472 0.3980 -5.2572 10 1 0.4227 1.5652 -4.8530 11 1 2.4019 0.8646 -6.0660 12 1 0.4219 -0.5355 -6.0650 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4913 3.6695 16 8 2.5734 -1.4779 3.7808 17 6 1.3741 0.2187 4.9000 18 1 0.2851 0.1970 4.9423 19 6 1.9006 1.6725 4.9533 20 8 3.1005 1.5480 5.7354 21 6 2.9790 0.4855 6.5779 22 6 3.6943 0.1744 7.7320 23 6 3.4093 -0.9764 8.4368 24 6 2.4131 -1.8323 8.0040 25 6 1.6971 -1.5299 6.8594 26 6 1.9773 -0.3791 6.1562 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 -0.7208 -1.2495 34 1 1.6766 -1.7489 -1.2493 35 1 2.8599 -1.8834 -4.7336 36 1 3.1300 -0.7216 1.2490 37 1 1.6766 -1.7489 1.2493 38 1 0.9943 0.7583 2.3564 39 1 1.1824 2.3253 5.4494 40 1 2.1285 2.0376 3.9519 41 1 4.4780 0.8345 8.0735 42 1 3.9670 -1.2102 9.3316 43 1 2.1950 -2.7337 8.5574 44 1 0.9186 -2.1957 6.5176 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367794194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:48 Heat of formation + Delta-G solvation = -75.804619 kcal Electronic energy + Delta-G solvation = -24603.694469 eV Core-core repulsion = 21099.025233 eV Total energy + Delta-G solvation = -3504.669236 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.49460 -40.49110 -38.61018 -38.33497 -35.30495 -34.20316 -33.57550 -31.04644 -30.39625 -29.07608 -27.95884 -27.66795 -25.44703 -24.58849 -23.45686 -22.86033 -21.38455 -19.96402 -18.71336 -18.37700 -17.92825 -17.64960 -17.25878 -16.54386 -16.50320 -16.27976 -16.12736 -15.16801 -15.10124 -14.91521 -14.64675 -14.42873 -14.28311 -13.94540 -13.94182 -13.82986 -13.50854 -12.92456 -12.74805 -12.70167 -12.64287 -12.55458 -12.34698 -12.24206 -12.16726 -11.95743 -11.76657 -11.54697 -11.19551 -10.91662 -10.81523 -10.53060 -10.13198 -9.87119 -9.14840 -8.14724 -6.22610 0.29235 0.42594 1.41551 1.42666 1.49702 1.54264 2.10047 2.29351 2.44217 2.81542 3.15501 3.20072 3.51617 3.77748 3.87209 3.98063 4.06459 4.19121 4.21538 4.23115 4.39536 4.45475 4.51527 4.61172 4.67888 4.69052 4.71232 4.77814 4.96184 5.05544 5.09740 5.12913 5.35475 5.36667 5.44570 5.44791 5.50491 5.53645 5.55069 5.56336 5.65752 5.79928 5.89573 6.18921 6.29268 6.52035 6.93180 7.18962 7.45446 8.98143 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.035035 B = 0.002743 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.015398 B =10204.223878 C =10457.007633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.123 4.123 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.255 1.255 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.142 3.858 14 N -0.704 5.704 15 C 0.515 3.485 16 O -0.579 6.579 17 C -0.095 4.095 18 H 0.159 0.841 19 C 0.060 3.940 20 O -0.323 6.323 21 C 0.086 3.914 22 C -0.156 4.156 23 C -0.081 4.081 24 C -0.154 4.154 25 C -0.069 4.069 26 C -0.170 4.170 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.074 0.926 33 H -0.017 1.017 34 H -0.015 1.015 35 H 0.259 0.741 36 H 0.041 0.959 37 H 0.045 0.955 38 H 0.415 0.585 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.140 0.860 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 7.625 24.587 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.178 1.178 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.018 3.982 14 N -0.357 5.357 15 C 0.302 3.698 16 O -0.459 6.459 17 C -0.116 4.116 18 H 0.176 0.824 19 C -0.015 4.015 20 O -0.238 6.238 21 C 0.041 3.959 22 C -0.174 4.174 23 C -0.099 4.099 24 C -0.172 4.172 25 C -0.087 4.087 26 C -0.171 4.171 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.002 0.998 34 H 0.003 0.997 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.254 0.746 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.157 0.843 42 H 0.179 0.821 43 H 0.170 0.830 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.139 7.003 24.483 25.978 hybrid contribution -0.073 -0.097 -1.644 1.648 sum -5.212 6.906 22.839 24.423 Atomic orbital electron populations 1.21702 0.93274 1.01036 1.01895 1.20702 0.96911 0.96293 0.92484 1.21712 0.99820 0.94559 1.01909 1.18986 0.94165 0.94229 0.92535 1.21623 1.30268 1.12045 0.90951 0.90707 1.25972 0.95706 0.95872 1.02823 1.70135 1.38936 1.25040 1.24023 0.85482 0.78028 0.78854 0.79192 1.17830 1.21182 1.21103 1.21209 0.97563 0.95452 0.83968 1.45910 1.53143 1.32198 1.04471 1.20807 0.79734 0.84219 0.85059 1.90706 1.39396 1.28462 1.87287 1.21649 1.04950 0.95681 0.89363 0.82363 1.24163 0.85482 0.93906 0.97939 1.86803 1.39697 1.47076 1.50213 1.19906 0.96233 0.87959 0.91834 1.20599 1.02835 1.00570 0.93408 1.21274 0.96658 0.92194 0.99778 1.21401 0.97161 1.01309 0.97292 1.20591 0.99546 0.94170 0.94408 1.20425 1.01546 0.98238 0.96903 0.90752 0.92470 0.94482 0.94690 0.92414 0.90765 0.99846 0.99674 0.93211 0.94071 0.93620 0.74587 0.85548 0.86249 0.84260 0.82110 0.82973 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 8.05 71.98 0.58 -3.28 16 2 C -0.06 -2.32 0.54 -52.18 -0.03 -2.35 16 3 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 4 C 0.04 1.94 4.04 29.85 0.12 2.06 16 5 C -0.51 -27.06 7.65 25.60 0.20 -26.87 16 6 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 7 C -0.01 -0.40 5.46 84.66 0.46 0.07 16 8 N -0.94 -57.27 13.29 21.45 0.28 -56.98 16 9 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 10 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 C 0.14 5.01 4.56 86.38 0.39 5.41 16 14 N -0.70 -18.26 4.69 -463.06 -2.17 -20.43 16 15 C 0.52 14.72 7.15 87.66 0.63 15.35 16 16 O -0.58 -22.79 16.15 -3.03 -0.05 -22.84 16 17 C -0.10 -1.88 3.52 -11.40 -0.04 -1.92 16 18 H 0.16 1.91 8.14 -2.39 -0.02 1.89 16 19 C 0.06 0.96 7.53 72.56 0.55 1.51 16 20 O -0.32 -7.92 11.10 -95.08 -1.06 -8.98 16 21 C 0.09 2.12 7.04 22.68 0.16 2.28 16 22 C -0.16 -3.23 10.06 22.45 0.23 -3.00 16 23 C -0.08 -1.37 10.02 22.21 0.22 -1.15 16 24 C -0.15 -2.73 10.07 22.31 0.22 -2.51 16 25 C -0.07 -1.50 10.03 22.18 0.22 -1.27 16 26 C -0.17 -4.04 4.94 -19.53 -0.10 -4.13 16 27 H 0.07 1.67 6.86 -2.39 -0.02 1.66 16 28 H 0.06 1.95 6.62 -2.38 -0.02 1.94 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.99 6.62 -2.39 -0.02 1.98 16 32 H 0.07 1.69 6.86 -2.39 -0.02 1.67 16 33 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H -0.02 -0.86 8.14 -2.39 -0.02 -0.87 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.42 7.59 5.99 -92.71 -0.56 7.04 16 39 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.12 1.66 7.53 -2.39 -0.02 1.64 16 41 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -76.19 356.63 3.88 -72.31 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.45 Total: 14.77 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.39 Total: -23.18 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -1.89 Total: -77.42 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.10 Total: -31.82 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -76.19 3.88 -72.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367794194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.491 kcal (2) G-P(sol) polarization free energy of solvation -76.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds