Wall clock time and date at job start Tue Mar 31 2020 10:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.52996 * 109.47460 * 239.99823 * 2 1 3 5 5 C 1.50709 * 109.47079 * 59.99964 * 4 2 1 6 6 H 1.08001 * 119.99331 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00242 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00295 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99886 * 0.02562 * 7 5 4 10 10 H 1.48491 * 109.47410 * 89.99542 * 9 7 5 11 11 H 1.48504 * 109.46876 * 209.99820 * 9 7 5 12 12 H 1.48506 * 109.47254 * 329.99302 * 9 7 5 13 13 C 1.52998 * 109.47254 * 119.99772 * 2 1 3 14 14 N 1.46506 * 109.47237 * 300.00146 * 13 2 1 15 15 C 1.34773 * 119.99969 * 179.72043 * 14 13 2 16 16 O 1.21281 * 120.00220 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00080 * 180.02562 * 15 14 13 18 18 H 1.09003 * 110.66476 * 306.76639 * 17 15 14 19 19 C 1.54710 * 110.74766 * 70.18251 * 17 15 14 20 20 C 1.51647 * 101.92768 * 93.04762 * 19 17 15 21 21 C 1.37739 * 132.17131 * 195.85912 * 20 19 17 22 22 C 1.38353 * 119.97476 * 179.02889 * 21 20 19 23 23 C 1.38287 * 119.76812 * 359.97438 * 22 21 20 24 24 C 1.37934 * 120.34962 * 0.23029 * 23 22 21 25 25 C 1.38890 * 107.03612 * 15.35336 * 20 19 17 26 26 O 1.36128 * 111.23408 * 1.11738 * 25 20 19 27 27 H 1.09002 * 109.47712 * 299.99691 * 1 2 3 28 28 H 1.08995 * 109.47426 * 60.00418 * 1 2 3 29 29 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46786 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46766 * 299.99987 * 3 2 1 32 32 H 1.09002 * 109.47164 * 59.99980 * 3 2 1 33 33 H 1.09000 * 109.47441 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.47235 * 299.99931 * 4 2 1 35 35 H 0.96994 * 119.99926 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47671 * 180.02562 * 13 2 1 37 37 H 1.08998 * 109.47454 * 60.00483 * 13 2 1 38 38 H 0.97005 * 119.99811 * 0.02562 * 14 13 2 39 39 H 1.08992 * 110.93689 * 211.20706 * 19 17 15 40 40 H 1.09004 * 110.93925 * 334.88826 * 19 17 15 41 41 H 1.07995 * 120.01552 * 358.99664 * 21 20 19 42 42 H 1.08001 * 120.11775 * 180.02562 * 22 21 20 43 43 H 1.08001 * 119.82669 * 180.20016 * 23 22 21 44 44 H 1.07998 * 119.87808 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 1.4324 0.1381 -4.8058 9 14 2.9452 -2.0003 -3.9033 10 1 2.0868 -3.2111 -3.9492 11 1 3.7376 -1.9074 -5.1558 12 1 3.8653 -2.0897 -2.7410 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0305 2.4455 15 6 1.8726 -0.4943 3.6695 16 8 2.5661 -1.4830 3.7808 17 6 1.3698 0.2158 4.9000 18 1 1.6247 1.2750 4.8641 19 6 -0.1566 0.0205 5.0603 20 6 -0.2238 -1.1971 5.9618 21 6 -1.2480 -2.0656 6.2679 22 6 -1.0211 -3.1271 7.1258 23 6 0.2356 -3.3115 7.6725 24 6 1.2616 -2.4404 7.3706 25 6 1.0404 -1.3666 6.5116 26 8 1.8954 -0.3945 6.0909 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 -0.7209 -1.2494 34 1 1.6767 -1.7489 -1.2492 35 1 1.6668 -0.1933 -5.6867 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2493 38 1 0.9936 0.7579 2.3564 39 1 -0.6117 0.8865 5.5407 40 1 -0.6267 -0.1811 4.0977 41 1 -2.2280 -1.9179 5.8388 42 1 -1.8225 -3.8097 7.3671 43 1 0.4146 -4.1416 8.3398 44 1 2.2401 -2.5914 7.8022 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377107085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:46 Heat of formation + Delta-G solvation = -52.767926 kcal Electronic energy + Delta-G solvation = -24644.462077 eV Core-core repulsion = 21140.791787 eV Total energy + Delta-G solvation = -3503.670290 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68297 -39.38130 -37.68647 -36.98067 -33.91999 -32.92976 -32.09801 -30.26510 -29.86531 -27.85482 -26.62085 -26.47236 -24.44999 -22.75961 -22.27467 -21.85663 -20.50825 -18.73968 -17.65553 -17.18106 -17.07975 -16.78798 -16.01574 -15.62557 -15.06412 -14.87461 -14.35230 -14.08575 -13.87485 -13.65928 -13.60889 -13.43262 -13.26696 -12.87608 -12.77917 -12.44396 -12.30711 -12.03772 -11.86283 -11.82580 -11.29167 -11.18247 -11.05076 -11.03867 -10.66158 -10.54777 -10.02389 -9.98509 -9.77546 -9.51357 -9.11842 -9.03748 -8.92991 -8.56450 -8.33428 -6.07259 -4.04827 1.05434 1.16280 2.46821 2.82364 3.27801 3.29612 3.37839 3.41788 3.53901 4.09222 4.18465 4.43133 4.56277 4.61274 4.81800 4.88513 4.99265 5.15970 5.22120 5.25139 5.33040 5.36928 5.42303 5.46608 5.57104 5.77666 6.03545 6.04852 6.08439 6.11266 6.16743 6.24460 6.25063 6.34077 6.38459 6.53831 6.60242 6.83649 6.93481 6.96464 6.99957 7.15641 7.32172 7.50501 7.75357 8.18894 8.49305 8.96372 9.55472 11.05421 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025108 B = 0.002970 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.911805 B = 9426.823678 C = 9588.126586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.126 3.874 14 N -0.715 5.715 15 C 0.492 3.508 16 O -0.524 6.524 17 C 0.063 3.937 18 H 0.141 0.859 19 C -0.099 4.099 20 C -0.175 4.175 21 C -0.068 4.068 22 C -0.150 4.150 23 C -0.086 4.086 24 C -0.133 4.133 25 C 0.114 3.886 26 O -0.275 6.275 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.263 0.737 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.400 0.600 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.364 -0.324 23.849 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.003 3.997 14 N -0.369 5.369 15 C 0.275 3.725 16 O -0.400 6.400 17 C 0.003 3.997 18 H 0.159 0.841 19 C -0.136 4.136 20 C -0.176 4.176 21 C -0.087 4.087 22 C -0.169 4.169 23 C -0.104 4.104 24 C -0.152 4.152 25 C 0.069 3.931 26 O -0.188 6.188 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.236 0.764 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.617 -0.975 23.818 24.281 hybrid contribution 0.271 -0.435 -0.516 0.727 sum -4.346 -1.410 23.302 23.746 Atomic orbital electron populations 1.21780 0.94757 1.01288 1.00790 1.20696 0.95843 0.95950 0.93824 1.21782 1.00530 0.95507 1.00806 1.19593 0.96327 0.95499 0.92576 1.21066 1.31913 1.13378 0.88594 0.90372 1.24992 0.95675 0.96735 0.95982 1.69896 1.45876 1.40576 0.97902 0.86865 0.81346 0.83915 0.77691 1.20357 1.21467 1.19001 1.21687 0.99034 0.96058 0.82894 1.46099 1.53275 1.32010 1.05476 1.20769 0.81391 0.85406 0.84895 1.90741 1.37235 1.25490 1.86501 1.23360 0.93550 0.98739 0.84076 0.84135 1.21765 0.93990 0.97001 1.00833 1.20715 0.94593 0.98978 1.03324 1.20298 0.97961 0.93400 0.96996 1.21034 0.97522 0.98940 0.99354 1.20885 0.92391 0.98173 0.98926 1.20283 1.00551 0.92903 1.01469 1.19559 0.88250 0.89567 0.95747 1.86919 1.46491 1.46672 1.38674 0.95056 0.90773 0.93388 0.93337 0.90778 0.95013 0.96335 0.96807 0.92760 0.91648 0.91740 0.76423 0.87840 0.88310 0.85675 0.85448 0.85150 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.05 37.15 0.30 -1.81 16 2 C -0.06 -1.10 0.54 -154.51 -0.08 -1.18 16 3 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.46 8.20 -34.44 -0.28 -13.74 16 6 H 0.08 2.17 5.92 -52.49 -0.31 1.86 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 9 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 13 C 0.13 2.05 4.56 -4.04 -0.02 2.03 16 14 N -0.71 -9.38 4.96 -60.29 -0.30 -9.67 16 15 C 0.49 7.08 7.03 -10.98 -0.08 7.00 16 16 O -0.52 -10.02 16.46 -13.48 -0.22 -10.24 16 17 C 0.06 0.68 4.11 -26.98 -0.11 0.57 16 18 H 0.14 1.04 8.14 -51.93 -0.42 0.61 16 19 C -0.10 -0.88 6.64 -26.52 -0.18 -1.06 16 20 C -0.18 -1.98 6.26 -104.10 -0.65 -2.63 16 21 C -0.07 -0.67 10.03 -39.72 -0.40 -1.07 16 22 C -0.15 -1.36 10.07 -39.52 -0.40 -1.76 16 23 C -0.09 -0.81 10.02 -39.67 -0.40 -1.21 16 24 C -0.13 -1.54 10.06 -39.30 -0.40 -1.93 16 25 C 0.11 1.48 6.83 -38.95 -0.27 1.22 16 26 O -0.28 -3.76 10.43 -39.19 -0.41 -4.17 16 27 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 28 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 32 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 33 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 34 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.40 4.15 6.16 -40.82 -0.25 3.90 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.82 7.91 -51.93 -0.41 0.41 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -33.35 354.17 -8.86 -42.21 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.53 Total: 1.77 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.84 Total: -15.75 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.47 Total: -35.85 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.63 Total: -14.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.35 -8.86 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377107085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.558 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds