Wall clock time and date at job start Tue Mar 31 2020 09:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47290 * 2 1 4 4 O 1.42904 * 113.28053 * 313.07119 * 3 2 1 5 5 C 1.53490 * 114.20716 * 180.02562 * 3 2 1 6 6 N 1.47066 * 87.98289 * 220.34526 * 5 3 2 7 7 C 1.34786 * 136.05638 * 207.08436 * 6 5 3 8 8 O 1.21279 * 120.00013 * 0.02562 * 7 6 5 9 9 C 1.50695 * 119.99702 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47136 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47166 * 305.97695 * 10 9 7 12 12 C 1.50708 * 109.47204 * 65.97266 * 10 9 7 13 13 H 1.07998 * 119.99881 * 26.86301 * 12 10 9 14 14 C 1.37871 * 120.00142 * 206.86457 * 12 10 9 15 15 N 1.31515 * 120.00104 * 353.56599 * 14 12 10 16 16 Si 1.86797 * 120.00047 * 173.57351 * 14 12 10 17 17 H 1.48505 * 109.47279 * 179.97438 * 16 14 12 18 18 H 1.48507 * 109.46786 * 299.99189 * 16 14 12 19 19 H 1.48496 * 109.47392 * 59.99495 * 16 14 12 20 20 C 1.50696 * 109.47412 * 185.97399 * 10 9 7 21 21 C 1.38234 * 120.00101 * 294.43411 * 20 10 9 22 22 C 1.38233 * 120.00199 * 179.80835 * 21 20 10 23 23 C 1.38235 * 119.99835 * 0.39996 * 22 21 20 24 24 C 1.38237 * 120.00057 * 359.85843 * 23 22 21 25 25 C 1.38233 * 119.99907 * 359.94984 * 24 23 22 26 26 C 1.47067 * 87.88700 * 27.34024 * 6 5 3 27 27 H 1.08999 * 109.47170 * 300.00038 * 1 2 3 28 28 H 1.09005 * 109.47490 * 60.00173 * 1 2 3 29 29 H 1.09000 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46548 * 240.00231 * 2 1 3 31 31 H 1.09003 * 109.47298 * 120.00330 * 2 1 3 32 32 H 0.96697 * 114.00350 * 46.92513 * 4 3 2 33 33 H 1.09003 * 113.47172 * 105.56474 * 5 3 2 34 34 H 1.09005 * 113.52572 * 335.13011 * 5 3 2 35 35 H 1.08994 * 109.47505 * 59.99827 * 9 7 6 36 36 H 1.08999 * 109.47213 * 299.99810 * 9 7 6 37 37 H 0.97004 * 119.99972 * 354.40610 * 15 14 12 38 38 H 1.07995 * 119.99801 * 0.02562 * 21 20 10 39 39 H 1.07997 * 120.00815 * 180.23581 * 22 21 20 40 40 H 1.07999 * 120.00390 * 179.83123 * 23 22 21 41 41 H 1.08000 * 120.00188 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.99985 * 180.02562 * 25 24 23 43 43 H 1.09002 * 113.46510 * 87.43788 * 26 6 5 44 44 H 1.08990 * 113.46839 * 217.87897 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.3831 2.2738 -0.9589 5 6 3.5696 1.5692 -0.0006 6 7 3.4260 2.6811 0.9511 7 6 4.1359 3.7806 1.2733 8 8 5.1768 4.0202 0.6989 9 6 3.6361 4.7122 2.3472 10 6 4.6207 5.8711 2.5157 11 1 5.6203 5.4754 2.6955 12 6 4.6299 6.7088 1.2629 13 1 3.7558 6.7427 0.6296 14 6 5.7543 7.4318 0.9253 15 7 6.7712 7.4927 1.7570 16 14 5.8331 8.3252 -0.7133 17 1 7.1380 9.0237 -0.8340 18 1 5.6921 7.3441 -1.8192 19 1 4.7317 9.3183 -0.7891 20 6 4.1994 6.7221 3.6859 21 6 3.0112 7.4268 3.6358 22 6 2.6229 8.2043 4.7107 23 6 3.4267 8.2837 5.8325 24 6 4.6175 7.5832 5.8805 25 6 5.0040 6.8026 4.8071 26 6 2.1702 2.0620 1.4012 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 0.4196 2.1916 -0.9564 33 1 3.9798 1.8725 -0.9639 34 1 4.0783 0.7013 0.4194 35 1 3.5503 4.1691 3.2882 36 1 2.6592 5.1034 2.0630 37 1 6.6998 7.0978 2.6402 38 1 2.3847 7.3671 2.7582 39 1 1.6927 8.7518 4.6732 40 1 3.1246 8.8932 6.6713 41 1 5.2457 7.6456 6.7568 42 1 5.9341 6.2550 4.8448 43 1 2.3090 1.3237 2.1909 44 1 1.3881 2.7851 1.6321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412327204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:45 Heat of formation + Delta-G solvation = -27.480121 kcal Electronic energy + Delta-G solvation = -24967.664275 eV Core-core repulsion = 21465.090547 eV Total energy + Delta-G solvation = -3502.573729 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.53426 -38.68987 -37.73376 -35.35912 -34.18678 -32.85549 -31.32051 -30.10445 -29.51082 -28.01224 -26.09142 -25.01723 -23.66431 -22.61861 -21.64313 -20.52084 -19.88412 -18.65115 -17.05773 -16.86437 -16.46214 -15.83777 -15.59710 -15.21852 -14.77429 -14.55274 -14.14376 -14.00234 -13.68323 -13.56740 -13.19504 -12.75302 -12.63131 -12.61692 -12.34620 -12.19157 -12.16931 -11.92475 -11.62744 -11.46823 -11.39564 -10.90191 -10.68786 -10.67556 -10.41688 -10.10984 -10.01487 -9.99473 -9.65416 -8.99188 -8.58727 -8.33290 -8.21006 -8.12996 -7.62314 -6.18761 -3.87302 2.19949 2.25218 3.19751 3.44839 3.53851 3.60553 3.75812 3.78267 4.13031 4.49345 4.62168 4.65847 4.71132 4.91770 5.08191 5.26028 5.32281 5.40107 5.45646 5.54743 5.57186 5.60464 5.64267 5.67925 5.70448 5.77207 5.83417 5.90680 6.01482 6.11981 6.13969 6.27283 6.32819 6.43313 6.72378 6.80791 6.94727 7.22025 7.23796 7.39649 7.47696 7.74812 7.86763 8.20172 8.26400 8.55915 8.98327 9.02473 9.81218 11.20759 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.004570 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.696401 B = 6124.796906 C = 7440.731957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.137 4.137 3 C 0.091 3.909 4 O -0.527 6.527 5 C 0.113 3.887 6 N -0.652 5.652 7 C 0.546 3.454 8 O -0.495 6.495 9 C -0.106 4.106 10 C 0.072 3.928 11 H 0.049 0.951 12 C -0.566 4.566 13 H 0.045 0.955 14 C 0.032 3.968 15 N -0.907 5.907 16 Si 1.060 2.940 17 H -0.284 1.284 18 H -0.288 1.288 19 H -0.290 1.290 20 C -0.032 4.032 21 C -0.106 4.106 22 C -0.130 4.130 23 C -0.152 4.152 24 C -0.125 4.125 25 C -0.130 4.130 26 C 0.077 3.923 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.376 0.624 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.270 0.730 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.911 -13.681 2.390 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.176 4.176 3 C 0.049 3.951 4 O -0.333 6.333 5 C -0.010 4.010 6 N -0.392 5.392 7 C 0.337 3.663 8 O -0.366 6.366 9 C -0.146 4.146 10 C 0.053 3.947 11 H 0.067 0.933 12 C -0.604 4.604 13 H 0.063 0.937 14 C -0.173 4.173 15 N -0.542 5.542 16 Si 0.889 3.111 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.217 1.217 20 C -0.033 4.033 21 C -0.124 4.124 22 C -0.148 4.148 23 C -0.171 4.171 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.048 4.048 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.225 0.775 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.532 -12.203 1.022 16.821 hybrid contribution -1.645 -0.972 1.161 2.236 sum -13.177 -13.175 2.183 18.761 Atomic orbital electron populations 1.21790 0.95278 1.02546 1.02086 1.21954 0.96708 0.95365 1.03560 1.22535 0.94134 0.89347 0.89090 1.86624 1.23731 1.65367 1.57610 1.22896 0.92963 0.89903 0.95287 1.49662 1.25481 1.23030 1.41005 1.20509 0.83138 0.78819 0.83880 1.90762 1.22553 1.71249 1.52012 1.21590 1.01644 0.96442 0.94913 1.17888 0.94323 0.90200 0.92325 0.93263 1.21534 1.02340 1.30099 1.06397 0.93656 1.25583 0.92217 0.95943 1.03589 1.70737 1.32066 1.43126 1.08280 0.83687 0.75835 0.75981 0.75580 1.20918 1.21464 1.21697 1.20833 0.92371 0.96343 0.93711 1.20925 0.97271 0.96956 0.97259 1.21011 0.99455 0.99926 0.94414 1.20825 0.96054 1.01829 0.98353 1.20961 0.96669 0.98269 0.98377 1.21075 0.99805 1.00385 0.93574 1.23662 0.87731 0.96565 0.96817 0.92176 0.92303 0.91946 0.90595 0.90254 0.77526 0.89996 0.89212 0.91859 0.90348 0.91846 0.86709 0.87439 0.87568 0.87437 0.87156 0.89642 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 9.36 37.15 0.35 -0.50 16 2 C -0.14 -0.94 5.72 -26.73 -0.15 -1.09 16 3 C 0.09 0.97 1.67 -89.98 -0.15 0.82 16 4 O -0.53 -6.42 13.52 -35.23 -0.48 -6.89 16 5 C 0.11 1.56 8.04 -8.51 -0.07 1.49 16 6 N -0.65 -11.08 3.69 -185.04 -0.68 -11.76 16 7 C 0.55 12.06 7.83 -10.98 -0.09 11.97 16 8 O -0.49 -13.48 15.79 5.56 0.09 -13.39 16 9 C -0.11 -2.21 4.78 -27.89 -0.13 -2.34 16 10 C 0.07 1.79 1.23 -92.92 -0.11 1.68 16 11 H 0.05 1.38 6.58 -51.93 -0.34 1.04 16 12 C -0.57 -16.05 6.35 -34.44 -0.22 -16.27 16 13 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 14 C 0.03 0.95 5.45 -17.82 -0.10 0.86 16 15 N -0.91 -28.41 13.56 55.43 0.75 -27.66 16 16 Si 1.06 27.18 29.91 -169.99 -5.08 22.10 16 17 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 C -0.03 -0.73 4.54 -104.63 -0.47 -1.20 16 21 C -0.11 -2.23 8.90 -39.58 -0.35 -2.58 16 22 C -0.13 -2.39 10.05 -39.58 -0.40 -2.78 16 23 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 24 C -0.12 -2.32 10.05 -39.58 -0.40 -2.72 16 25 C -0.13 -2.78 9.18 -39.58 -0.36 -3.14 16 26 C 0.08 0.89 7.86 -8.37 -0.07 0.82 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.29 6.71 -51.93 -0.35 -0.06 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.46 7.89 -51.93 -0.41 0.05 16 32 H 0.38 2.92 6.93 45.56 0.32 3.23 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.00 8.11 -51.93 -0.42 0.57 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.56 7.97 -51.93 -0.41 1.15 16 37 H 0.27 8.32 6.25 -40.82 -0.25 8.07 16 38 H 0.11 2.38 7.85 -52.49 -0.41 1.97 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.11 2.32 7.95 -52.49 -0.42 1.91 16 43 H 0.09 0.78 7.93 -51.93 -0.41 0.37 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -36.72 363.82 -9.17 -45.89 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.13 Total: 4.32 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -3.12 Total: -18.09 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.07 Total: -39.43 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.39 Total: -20.28 kcal Atomic # 14 Polarization: 27.18 SS G_CDS: -5.08 Total: 22.10 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.72 -9.17 -45.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412327204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.411 kcal (2) G-P(sol) polarization free energy of solvation -36.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds