Wall clock time and date at job start Tue Mar 31 2020 09:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50699 * 109.47099 * 2 1 4 4 C 1.38261 * 119.94786 * 89.99786 * 3 2 1 5 5 C 1.38149 * 120.05760 * 180.02562 * 4 3 2 6 6 C 1.38728 * 119.94322 * 359.97438 * 5 4 3 7 7 O 1.35898 * 120.05692 * 180.02562 * 6 5 4 8 8 C 1.42895 * 117.00373 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47405 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00330 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00135 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47269 * 184.79147 * 12 11 9 14 14 C 1.50694 * 115.55114 * 294.81128 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20873 * 14 13 12 16 16 C 1.37875 * 120.00314 * 274.92789 * 14 13 12 17 17 N 1.31509 * 119.99913 * 355.42420 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 175.41703 * 16 14 13 19 19 H 1.48494 * 109.47052 * 60.00642 * 18 16 14 20 20 H 1.48500 * 109.47055 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47106 * 300.00083 * 18 16 14 22 22 C 1.53003 * 117.49834 * 80.48431 * 13 12 11 23 23 C 1.53006 * 117.49908 * 149.14426 * 13 12 11 24 24 C 1.38733 * 119.88800 * 0.28034 * 6 5 4 25 25 C 1.38147 * 119.94485 * 359.46645 * 24 6 5 26 26 H 1.08999 * 109.47379 * 300.00317 * 1 2 3 27 27 H 1.08998 * 109.47357 * 60.00463 * 1 2 3 28 28 H 1.09002 * 109.47694 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47379 * 239.99683 * 2 1 3 30 30 H 1.09004 * 109.46909 * 119.99548 * 2 1 3 31 31 H 1.08000 * 119.97224 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.02503 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.47210 * 59.99485 * 8 7 6 34 34 H 1.09009 * 109.47039 * 300.00261 * 8 7 6 35 35 H 0.96999 * 119.99637 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47395 * 64.78624 * 12 11 9 37 37 H 1.09007 * 109.47080 * 304.78945 * 12 11 9 38 38 H 0.97001 * 119.99960 * 184.99387 * 17 16 14 39 39 H 1.09003 * 117.50034 * 214.99852 * 22 13 12 40 40 H 1.09002 * 117.49971 * 0.02686 * 22 13 12 41 41 H 1.08996 * 117.49810 * 359.97342 * 23 13 12 42 42 H 1.08995 * 117.50078 * 144.97442 * 23 13 12 43 43 H 1.08002 * 120.02632 * 179.71565 * 24 6 5 44 44 H 1.07999 * 119.97386 * 180.23047 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0716 1.1980 5 6 2.7223 3.3742 1.2006 6 6 2.9539 4.0292 -0.0001 7 8 3.4069 5.3105 -0.0002 8 6 3.6226 5.9223 -1.2734 9 6 4.1213 7.3306 -1.0761 10 8 4.2762 7.7676 0.0446 11 7 4.3942 8.1049 -2.1450 12 6 4.8795 9.4738 -1.9531 13 6 4.9959 10.1686 -3.3112 14 6 6.0238 9.5921 -4.2503 15 1 5.7288 8.8675 -4.9950 16 6 7.3399 9.9937 -4.1627 17 7 7.6825 10.9447 -3.3215 18 14 8.6363 9.1868 -5.2387 19 1 8.2923 9.3946 -6.6683 20 1 9.9621 9.7926 -4.9551 21 1 8.6852 7.7314 -4.9478 22 6 3.7149 10.7348 -3.9272 23 6 4.7714 11.6816 -3.3522 24 6 2.7173 3.3758 -1.2009 25 6 2.2623 2.0714 -1.1982 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 2.0814 1.5614 2.1326 32 1 2.9014 3.8822 2.1368 33 1 2.6857 5.9428 -1.8301 34 1 4.3639 5.3495 -1.8309 35 1 4.2699 7.7555 -3.0413 36 1 5.8576 9.4486 -1.4728 37 1 4.1793 10.0226 -1.3231 38 1 8.5935 11.2777 -3.3108 39 1 3.6157 10.6902 -5.0118 40 1 2.7893 10.6126 -3.3648 41 1 4.5404 12.1818 -2.4118 42 1 5.3675 12.2598 -4.0582 43 1 2.8924 3.8852 -2.1370 44 1 2.0815 1.5611 -2.1327 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431175659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:22 Heat of formation + Delta-G solvation = -38.164855 kcal Electronic energy + Delta-G solvation = -23555.382185 eV Core-core repulsion = 20052.345132 eV Total energy + Delta-G solvation = -3503.037053 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 9.70 seconds Orbital eigenvalues (eV) -40.40429 -39.10738 -37.72073 -36.63610 -33.76679 -33.42321 -32.01504 -31.24338 -29.56666 -28.25803 -26.04793 -25.01728 -23.78139 -22.90180 -21.24515 -21.00096 -19.94308 -19.37078 -18.36192 -17.10799 -16.28386 -16.07653 -15.83184 -15.69373 -14.94687 -14.75057 -14.54379 -14.31900 -14.11690 -13.80361 -13.62503 -13.44570 -13.14316 -12.90396 -12.65218 -12.43392 -12.23764 -11.77627 -11.63270 -11.40646 -11.23674 -11.03177 -11.00446 -10.92346 -10.91599 -10.58959 -10.28343 -9.67691 -9.38146 -9.15626 -9.10409 -8.54979 -8.36943 -8.19278 -8.16589 -6.12262 -4.22921 1.18739 1.27297 2.78094 2.99910 3.23169 3.29775 3.30490 3.59239 3.99543 4.30698 4.55860 4.58204 4.71327 4.85231 4.95969 5.08325 5.08559 5.12022 5.16011 5.19066 5.24915 5.33809 5.35982 5.51596 5.60525 5.68864 5.87632 5.91173 5.96854 6.14462 6.22189 6.28192 6.41260 6.45740 6.49184 6.62027 6.65458 6.78716 7.07578 7.13635 7.31862 7.33138 7.48500 7.75730 8.12618 8.27741 8.69927 8.78723 9.44699 10.94811 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.002594 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.341024 B =10790.409803 C =11311.153749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.127 4.127 4 C -0.078 4.078 5 C -0.148 4.148 6 C 0.130 3.870 7 O -0.288 6.288 8 C 0.041 3.959 9 C 0.506 3.494 10 O -0.534 6.534 11 N -0.698 5.698 12 C 0.164 3.836 13 C 0.023 3.977 14 C -0.503 4.503 15 H 0.060 0.940 16 C 0.074 3.926 17 N -0.874 5.874 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.211 4.211 23 C -0.141 4.141 24 C -0.208 4.208 25 C -0.077 4.077 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.402 0.598 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.263 0.737 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.130 0.870 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.964 -18.156 3.578 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.128 4.128 4 C -0.096 4.096 5 C -0.167 4.167 6 C 0.084 3.916 7 O -0.200 6.200 8 C -0.038 4.038 9 C 0.289 3.711 10 O -0.411 6.411 11 N -0.349 5.349 12 C 0.042 3.958 13 C 0.022 3.978 14 C -0.540 4.540 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.509 5.509 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.248 4.248 23 C -0.179 4.179 24 C -0.227 4.227 25 C -0.095 4.095 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.236 0.764 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.148 0.852 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.609 -17.608 4.672 21.602 hybrid contribution 0.792 -0.445 -1.345 1.623 sum -10.817 -18.053 3.327 21.307 Atomic orbital electron populations 1.21766 0.94978 1.01485 1.02252 1.20452 0.95967 0.92608 1.02620 1.19781 1.03063 0.96820 0.93091 1.20812 0.97634 0.93469 0.97729 1.20455 1.04622 0.95057 0.96519 1.19122 0.94268 0.83866 0.94315 1.86176 1.80112 1.23869 1.29852 1.22562 1.02256 0.93581 0.85378 1.19882 0.79238 0.86216 0.85739 1.90710 1.52586 1.74054 1.23782 1.45845 1.65633 1.15258 1.08181 1.21059 0.98013 0.79034 0.97712 1.19033 0.93396 0.92873 0.92479 1.20301 0.91246 1.25683 1.16815 0.92208 1.24999 0.98383 0.94810 0.94908 1.69972 1.19163 1.26351 1.35448 0.86680 0.80891 0.79865 0.80686 1.20260 1.21235 1.20129 1.23028 0.93023 1.09442 0.99301 1.22473 1.00678 0.94333 1.00447 1.21303 1.07328 0.96910 0.97172 1.20800 0.97334 0.93715 0.97654 0.92573 0.92595 0.92597 0.91261 0.91235 0.85542 0.85021 0.89267 0.89071 0.76362 0.91219 0.93919 0.92721 0.90336 0.91690 0.91756 0.89446 0.85244 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.15 0.37 -0.57 16 2 C -0.08 -0.55 6.06 -27.89 -0.17 -0.72 16 3 C -0.13 -1.19 5.13 -104.60 -0.54 -1.73 16 4 C -0.08 -0.77 9.69 -39.61 -0.38 -1.16 16 5 C -0.15 -1.77 9.99 -39.43 -0.39 -2.16 16 6 C 0.13 1.73 6.69 -39.22 -0.26 1.47 16 7 O -0.29 -4.56 9.67 -39.33 -0.38 -4.94 16 8 C 0.04 0.57 5.22 36.00 0.19 0.76 16 9 C 0.51 9.34 7.91 -10.98 -0.09 9.25 16 10 O -0.53 -12.22 16.50 -14.35 -0.24 -12.45 16 11 N -0.70 -12.95 5.48 -60.30 -0.33 -13.28 16 12 C 0.16 3.63 5.50 -4.05 -0.02 3.61 16 13 C 0.02 0.52 1.47 -155.66 -0.23 0.30 16 14 C -0.50 -12.57 8.59 -34.44 -0.30 -12.86 16 15 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 16 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 17 N -0.87 -23.87 12.65 55.43 0.70 -23.17 16 18 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 C -0.21 -4.26 9.96 -26.69 -0.27 -4.53 16 23 C -0.14 -3.18 9.14 -26.69 -0.24 -3.42 16 24 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 25 C -0.08 -0.75 9.69 -39.60 -0.38 -1.13 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.09 0.98 7.65 -51.93 -0.40 0.58 16 34 H 0.09 1.07 7.67 -51.92 -0.40 0.67 16 35 H 0.40 6.56 8.33 -40.82 -0.34 6.22 16 36 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.04 0.94 8.09 -51.92 -0.42 0.52 16 38 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 43 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 374.23 15.07 5.64 5.64 Total: -1.00 -30.51 374.23 -9.72 -40.24 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.92 Total: 6.57 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -3.17 Total: -13.77 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.37 Total: -36.45 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.62 Total: -17.39 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.51 -9.72 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431175659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.073 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.71 seconds