Wall clock time and date at job start Tue Mar 31 2020 09:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42898 * 109.47208 * 2 1 4 4 C 1.52994 * 109.47115 * 120.00206 * 2 1 3 5 5 C 1.50703 * 109.47281 * 304.99575 * 4 2 1 6 6 C 1.38241 * 119.99977 * 269.72710 * 5 4 2 7 7 C 1.38236 * 119.99805 * 179.75758 * 6 5 4 8 8 C 1.38238 * 119.99799 * 0.51761 * 7 6 5 9 9 C 1.38233 * 120.00164 * 359.74136 * 8 7 6 10 10 C 1.38237 * 119.99786 * 89.99752 * 5 4 2 11 11 C 1.50700 * 109.46681 * 240.00072 * 2 1 3 12 12 O 1.21281 * 120.00047 * 266.27235 * 11 2 1 13 13 N 1.34778 * 120.00319 * 86.27456 * 11 2 1 14 14 C 1.46493 * 120.00258 * 185.03398 * 13 11 2 15 15 C 1.52997 * 109.47259 * 175.28488 * 14 13 11 16 16 C 1.50696 * 115.54996 * 63.65443 * 15 14 13 17 17 H 1.08004 * 120.00197 * 268.60588 * 16 15 14 18 18 C 1.37879 * 119.99941 * 88.60802 * 16 15 14 19 19 N 1.31518 * 119.99857 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00064 * 0.07034 * 18 16 15 21 21 H 1.48509 * 109.47145 * 92.15628 * 20 18 16 22 22 H 1.48502 * 109.47309 * 212.15019 * 20 18 16 23 23 H 1.48494 * 109.47474 * 332.15787 * 20 18 16 24 24 C 1.53004 * 117.49954 * 277.98412 * 15 14 13 25 25 C 1.53009 * 117.49934 * 209.32634 * 15 14 13 26 26 H 1.09005 * 109.46748 * 299.99926 * 1 2 3 27 27 H 1.09000 * 109.47066 * 59.99822 * 1 2 3 28 28 H 1.08996 * 109.46934 * 180.02562 * 1 2 3 29 29 H 0.96696 * 113.99920 * 175.16590 * 3 2 1 30 30 H 1.09004 * 109.47307 * 184.99733 * 4 2 1 31 31 H 1.09003 * 109.47237 * 64.99697 * 4 2 1 32 32 H 1.07992 * 119.99935 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.99916 * 180.23371 * 7 6 5 34 34 H 1.07998 * 119.99919 * 179.71516 * 8 7 6 35 35 H 1.08002 * 120.00111 * 179.97438 * 9 8 7 36 36 H 1.07997 * 119.99871 * 0.02562 * 10 5 4 37 37 H 0.97004 * 119.99534 * 5.03010 * 13 11 2 38 38 H 1.09001 * 109.47298 * 295.28379 * 14 13 11 39 39 H 1.09003 * 109.47393 * 55.28034 * 14 13 11 40 40 H 0.96997 * 119.99706 * 179.97438 * 19 18 16 41 41 H 1.09001 * 117.49540 * 359.97438 * 24 15 14 42 42 H 1.08999 * 117.49749 * 145.01833 * 24 15 14 43 43 H 1.08998 * 117.49349 * 214.98276 * 25 15 14 44 44 H 1.09002 * 117.49719 * 359.97357 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.4392 -0.0860 2.4766 6 6 2.0912 0.9598 3.1031 7 6 1.5375 1.5458 4.2260 8 6 0.3374 1.0791 4.7287 9 6 -0.3118 0.0299 4.1054 10 6 0.2390 -0.5526 2.9792 11 6 2.0323 -0.7104 -1.2305 12 8 2.2988 -1.8926 -1.1819 13 7 2.1854 -0.0321 -2.3850 14 6 2.5673 -0.7434 -3.6074 15 6 2.5580 0.2299 -4.7879 16 6 3.5560 1.3563 -4.7094 17 1 3.2743 2.2971 -4.2600 18 6 4.8288 1.1859 -5.2114 19 7 5.6999 2.1688 -5.1425 20 14 5.3155 -0.4406 -5.9906 21 1 5.0638 -0.3839 -7.4531 22 1 6.7580 -0.6945 -5.7462 23 1 4.5115 -1.5364 -5.3922 24 6 1.2104 0.5248 -5.4498 25 6 2.2450 -0.3416 -6.1723 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.9674 1.4246 0.0744 30 1 3.1264 -0.6444 1.2951 31 1 1.7516 -1.7715 1.2055 32 1 3.0307 1.3217 2.7126 33 1 2.0450 2.3653 4.7132 34 1 -0.0929 1.5339 5.6087 35 1 -1.2493 -0.3350 4.4984 36 1 -0.2678 -1.3727 2.4926 37 1 2.0426 0.9271 -2.4065 38 1 3.5674 -1.1600 -3.4880 39 1 1.8581 -1.5494 -3.7955 40 1 6.5954 2.0487 -5.4954 41 1 0.3306 0.0251 -5.0444 42 1 1.0459 1.5335 -5.8287 43 1 2.7608 0.0974 -7.0263 44 1 2.0462 -1.4111 -6.2421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435952974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:17 Heat of formation + Delta-G solvation = -43.989216 kcal Electronic energy + Delta-G solvation = -24883.950029 eV Core-core repulsion = 21380.660412 eV Total energy + Delta-G solvation = -3503.289617 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -40.30835 -39.05607 -37.33856 -36.57263 -33.66801 -32.95949 -32.15725 -31.06965 -30.35514 -26.99190 -26.90798 -25.37069 -23.09809 -22.58781 -21.77553 -21.03996 -19.74911 -19.25264 -17.84439 -16.79614 -16.45544 -15.78157 -15.64474 -15.22840 -15.14340 -15.04182 -14.79068 -14.15455 -13.79011 -13.50565 -13.26178 -13.03644 -12.80952 -12.68442 -12.49811 -12.42406 -12.18567 -11.97160 -11.86328 -11.62540 -11.19425 -11.12776 -11.03489 -10.85946 -10.74089 -10.53320 -10.20985 -9.69087 -9.23925 -9.19771 -8.98818 -8.74129 -8.70084 -8.56379 -8.33673 -6.18961 -4.23875 1.25077 1.31831 2.92103 3.25174 3.35989 3.40263 3.49769 3.76803 4.17337 4.36626 4.61098 4.72479 4.84510 4.88286 4.90474 4.99037 5.04840 5.09152 5.23708 5.37836 5.42857 5.62852 5.64674 5.72965 5.74844 5.83253 5.96429 5.99003 6.01282 6.03770 6.11401 6.19595 6.36385 6.39739 6.41412 6.45783 6.55832 6.67210 6.91077 6.94581 7.03316 7.07563 7.51903 7.64476 8.13147 8.38230 8.66456 8.81707 9.43998 10.92172 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.003430 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.388938 B = 8160.543537 C = 8524.335451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.129 3.871 3 O -0.544 6.544 4 C -0.098 4.098 5 C -0.068 4.068 6 C -0.104 4.104 7 C -0.120 4.120 8 C -0.127 4.127 9 C -0.123 4.123 10 C -0.116 4.116 11 C 0.481 3.519 12 O -0.555 6.555 13 N -0.689 5.689 14 C 0.154 3.846 15 C -0.015 4.015 16 C -0.491 4.491 17 H 0.079 0.921 18 C 0.080 3.920 19 N -0.894 5.894 20 Si 0.879 3.121 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.258 1.258 24 C -0.178 4.178 25 C -0.194 4.194 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.382 0.618 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.412 0.588 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.265 0.735 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.333 -3.302 15.684 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.085 3.915 3 O -0.350 6.350 4 C -0.136 4.136 5 C -0.068 4.068 6 C -0.122 4.122 7 C -0.138 4.138 8 C -0.145 4.145 9 C -0.141 4.141 10 C -0.134 4.134 11 C 0.265 3.735 12 O -0.435 6.435 13 N -0.339 5.339 14 C 0.031 3.969 15 C -0.016 4.016 16 C -0.528 4.528 17 H 0.097 0.903 18 C -0.123 4.123 19 N -0.531 5.531 20 Si 0.707 3.293 21 H -0.205 1.205 22 H -0.221 1.221 23 H -0.182 1.182 24 C -0.215 4.215 25 C -0.231 4.231 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.231 0.769 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.248 0.752 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.589 -3.939 15.579 19.244 hybrid contribution 1.002 -0.473 -0.570 1.246 sum -9.587 -4.412 15.009 18.348 Atomic orbital electron populations 1.21807 0.90854 1.02858 1.03956 1.21286 0.96515 0.82542 0.91180 1.86575 1.27790 1.24349 1.96333 1.21137 1.00894 1.00812 0.90732 1.19703 0.95050 0.96206 0.95871 1.21049 1.00090 0.95648 0.95463 1.21133 0.96088 0.99880 0.96685 1.21113 0.95845 0.97426 1.00164 1.21102 0.99929 0.96884 0.96149 1.21085 0.95541 1.00292 0.96469 1.21235 0.78785 0.87839 0.85660 1.90663 1.51444 1.16113 1.85278 1.45884 1.67021 1.12813 1.08135 1.21155 0.99041 0.93274 0.83440 1.19611 0.95975 0.97120 0.88910 1.20193 0.94480 0.97709 1.40438 0.90273 1.24975 0.96122 0.96314 0.94891 1.69888 1.05518 1.31936 1.45727 0.86851 0.77293 0.85164 0.79964 1.20467 1.22092 1.18165 1.22856 0.92630 1.00080 1.05942 1.22951 1.04965 0.97463 0.97763 0.90411 0.91284 0.90828 0.76948 0.90230 0.88682 0.86091 0.86230 0.86434 0.86295 0.86099 0.75185 0.91944 0.93669 0.92473 0.90948 0.89349 0.89163 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.06 37.16 0.30 -1.37 16 2 C 0.13 1.73 1.02 -91.77 -0.09 1.64 16 3 O -0.54 -7.17 11.72 -35.23 -0.41 -7.58 16 4 C -0.10 -1.19 4.26 -27.88 -0.12 -1.31 16 5 C -0.07 -0.76 4.24 -104.62 -0.44 -1.20 16 6 C -0.10 -1.12 9.41 -39.58 -0.37 -1.49 16 7 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 8 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 9 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 10 C -0.12 -1.19 7.85 -39.58 -0.31 -1.50 16 11 C 0.48 8.30 6.71 -10.98 -0.07 8.23 16 12 O -0.56 -11.22 16.01 5.56 0.09 -11.14 16 13 N -0.69 -12.70 5.40 -60.30 -0.33 -13.03 16 14 C 0.15 3.22 5.18 -4.05 -0.02 3.20 16 15 C -0.01 -0.33 0.86 -155.66 -0.13 -0.46 16 16 C -0.49 -12.74 9.13 -34.44 -0.31 -13.05 16 17 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.10 13.96 55.43 0.77 -25.32 16 20 Si 0.88 21.19 24.78 -169.99 -4.21 16.98 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.26 -5.96 5.83 56.52 0.33 -5.63 16 24 C -0.18 -3.42 9.96 -26.69 -0.27 -3.68 16 25 C -0.19 -3.96 7.42 -26.69 -0.20 -4.16 16 26 H 0.08 0.89 6.14 -51.93 -0.32 0.57 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.38 4.24 9.02 45.56 0.41 4.65 16 30 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.09 1.21 7.62 -51.93 -0.40 0.82 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.12 1.10 8.03 -52.49 -0.42 0.67 16 37 H 0.41 7.45 7.61 -40.82 -0.31 7.14 16 38 H 0.06 1.43 7.01 -51.93 -0.36 1.07 16 39 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 43 H 0.09 1.93 7.01 -51.93 -0.36 1.57 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -30.67 359.57 -8.05 -38.71 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.04 Total: 13.71 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -3.34 Total: -17.75 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.45 Total: -38.35 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.32 Total: -18.72 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.21 Total: 16.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.67 -8.05 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435952974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.278 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds