Wall clock time and date at job start Tue Mar 31 2020 09:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42898 * 109.47208 * 2 1 4 4 C 1.52994 * 109.47115 * 120.00206 * 2 1 3 5 5 C 1.50703 * 109.47281 * 304.99575 * 4 2 1 6 6 C 1.38241 * 119.99977 * 269.72710 * 5 4 2 7 7 C 1.38236 * 119.99805 * 179.75758 * 6 5 4 8 8 C 1.38238 * 119.99799 * 0.51761 * 7 6 5 9 9 C 1.38233 * 120.00164 * 359.74136 * 8 7 6 10 10 C 1.38237 * 119.99786 * 89.99752 * 5 4 2 11 11 C 1.50700 * 109.46681 * 240.00072 * 2 1 3 12 12 O 1.21281 * 120.00047 * 266.27235 * 11 2 1 13 13 N 1.34778 * 120.00319 * 86.27456 * 11 2 1 14 14 C 1.46493 * 120.00258 * 185.03398 * 13 11 2 15 15 C 1.52997 * 109.47259 * 175.28488 * 14 13 11 16 16 C 1.50696 * 115.54996 * 63.65443 * 15 14 13 17 17 H 1.08004 * 120.00197 * 268.60588 * 16 15 14 18 18 C 1.37879 * 119.99941 * 88.60802 * 16 15 14 19 19 N 1.31518 * 119.99857 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00064 * 0.07034 * 18 16 15 21 21 H 1.48509 * 109.47145 * 92.15628 * 20 18 16 22 22 H 1.48502 * 109.47309 * 212.15019 * 20 18 16 23 23 H 1.48494 * 109.47474 * 332.15787 * 20 18 16 24 24 C 1.53004 * 117.49954 * 277.98412 * 15 14 13 25 25 C 1.53009 * 117.49934 * 209.32634 * 15 14 13 26 26 H 1.09005 * 109.46748 * 299.99926 * 1 2 3 27 27 H 1.09000 * 109.47066 * 59.99822 * 1 2 3 28 28 H 1.08996 * 109.46934 * 180.02562 * 1 2 3 29 29 H 0.96696 * 113.99920 * 175.16590 * 3 2 1 30 30 H 1.09004 * 109.47307 * 184.99733 * 4 2 1 31 31 H 1.09003 * 109.47237 * 64.99697 * 4 2 1 32 32 H 1.07992 * 119.99935 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.99916 * 180.23371 * 7 6 5 34 34 H 1.07998 * 119.99919 * 179.71516 * 8 7 6 35 35 H 1.08002 * 120.00111 * 179.97438 * 9 8 7 36 36 H 1.07997 * 119.99871 * 0.02562 * 10 5 4 37 37 H 0.97004 * 119.99534 * 5.03010 * 13 11 2 38 38 H 1.09001 * 109.47298 * 295.28379 * 14 13 11 39 39 H 1.09003 * 109.47393 * 55.28034 * 14 13 11 40 40 H 0.96997 * 119.99706 * 179.97438 * 19 18 16 41 41 H 1.09001 * 117.49540 * 359.97438 * 24 15 14 42 42 H 1.08999 * 117.49749 * 145.01833 * 24 15 14 43 43 H 1.08998 * 117.49349 * 214.98276 * 25 15 14 44 44 H 1.09002 * 117.49719 * 359.97357 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.4392 -0.0860 2.4766 6 6 2.0912 0.9598 3.1031 7 6 1.5375 1.5458 4.2260 8 6 0.3374 1.0791 4.7287 9 6 -0.3118 0.0299 4.1054 10 6 0.2390 -0.5526 2.9792 11 6 2.0323 -0.7104 -1.2305 12 8 2.2988 -1.8926 -1.1819 13 7 2.1854 -0.0321 -2.3850 14 6 2.5673 -0.7434 -3.6074 15 6 2.5580 0.2299 -4.7879 16 6 3.5560 1.3563 -4.7094 17 1 3.2743 2.2971 -4.2600 18 6 4.8288 1.1859 -5.2114 19 7 5.6999 2.1688 -5.1425 20 14 5.3155 -0.4406 -5.9906 21 1 5.0638 -0.3839 -7.4531 22 1 6.7580 -0.6945 -5.7462 23 1 4.5115 -1.5364 -5.3922 24 6 1.2104 0.5248 -5.4498 25 6 2.2450 -0.3416 -6.1723 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.9674 1.4246 0.0744 30 1 3.1264 -0.6444 1.2951 31 1 1.7516 -1.7715 1.2055 32 1 3.0307 1.3217 2.7126 33 1 2.0450 2.3653 4.7132 34 1 -0.0929 1.5339 5.6087 35 1 -1.2493 -0.3350 4.4984 36 1 -0.2678 -1.3727 2.4926 37 1 2.0426 0.9271 -2.4065 38 1 3.5674 -1.1600 -3.4880 39 1 1.8581 -1.5494 -3.7955 40 1 6.5954 2.0487 -5.4954 41 1 0.3306 0.0251 -5.0444 42 1 1.0459 1.5335 -5.8287 43 1 2.7608 0.0974 -7.0263 44 1 2.0462 -1.4111 -6.2421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435952974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:11 Heat of formation + Delta-G solvation = -64.562378 kcal Electronic energy + Delta-G solvation = -24884.842148 eV Core-core repulsion = 21380.660412 eV Total energy + Delta-G solvation = -3504.181736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 5.63 seconds Orbital eigenvalues (eV) -41.49089 -40.05080 -38.87346 -37.82501 -35.08694 -34.22515 -34.00372 -31.82337 -31.27355 -28.56399 -27.89846 -27.26178 -24.23544 -23.37501 -23.32084 -21.97152 -21.24048 -20.77681 -19.18434 -18.34759 -17.46219 -17.11304 -16.92389 -16.72349 -16.48428 -15.97240 -15.91228 -15.62498 -15.10618 -14.75211 -14.65213 -14.31240 -14.20048 -13.85174 -13.73356 -13.57319 -13.39955 -13.10670 -13.05020 -12.90292 -12.73092 -12.65083 -12.20118 -11.99362 -11.93234 -11.78844 -11.76532 -11.57015 -11.00422 -10.72232 -10.62054 -10.26852 -9.92707 -9.72663 -9.51142 -8.30357 -6.37083 0.48739 0.58107 1.32760 1.39064 1.49165 1.53795 2.17878 2.35582 2.94137 3.04689 3.13918 3.20908 3.59647 3.84189 3.90091 3.99980 4.05967 4.14280 4.23667 4.34239 4.36758 4.39678 4.49730 4.52566 4.70228 4.73850 4.77154 4.83226 4.84464 4.86337 4.92124 5.07216 5.14238 5.20126 5.24755 5.27099 5.46100 5.53664 5.64014 5.68847 5.69603 5.77542 6.18926 6.28000 6.44217 6.70090 6.75603 7.22922 7.33640 8.84107 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.003430 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.388938 B = 8160.543537 C = 8524.335451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.139 3.861 3 O -0.549 6.549 4 C -0.090 4.090 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.129 4.129 8 C -0.130 4.130 9 C -0.127 4.127 10 C -0.124 4.124 11 C 0.481 3.519 12 O -0.584 6.584 13 N -0.691 5.691 14 C 0.163 3.837 15 C -0.038 4.038 16 C -0.479 4.479 17 H 0.045 0.955 18 C 0.027 3.973 19 N -0.942 5.942 20 Si 0.930 3.070 21 H -0.269 1.269 22 H -0.303 1.303 23 H -0.241 1.241 24 C -0.154 4.154 25 C -0.192 4.192 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.390 0.610 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.413 0.587 38 H 0.036 0.964 39 H 0.058 0.942 40 H 0.264 0.736 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 -4.332 16.577 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.095 3.905 3 O -0.356 6.356 4 C -0.128 4.128 5 C -0.081 4.081 6 C -0.137 4.137 7 C -0.147 4.147 8 C -0.148 4.148 9 C -0.144 4.144 10 C -0.142 4.142 11 C 0.267 3.733 12 O -0.465 6.465 13 N -0.341 5.341 14 C 0.039 3.961 15 C -0.039 4.039 16 C -0.517 4.517 17 H 0.063 0.937 18 C -0.171 4.171 19 N -0.582 5.582 20 Si 0.756 3.244 21 H -0.194 1.194 22 H -0.230 1.230 23 H -0.164 1.164 24 C -0.191 4.191 25 C -0.230 4.230 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.239 0.761 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.142 0.858 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.249 0.751 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.683 -4.967 16.478 21.379 hybrid contribution 1.597 -0.073 -0.769 1.774 sum -11.086 -5.040 15.709 19.877 Atomic orbital electron populations 1.21821 0.89532 1.03562 1.04220 1.21232 0.97317 0.82270 0.89653 1.86569 1.28630 1.24174 1.96190 1.21029 1.00741 1.00294 0.90767 1.19636 0.95809 0.96876 0.95782 1.21211 1.00489 0.95907 0.96115 1.21405 0.96545 1.00312 0.96456 1.21461 0.95506 0.97177 1.00677 1.21415 1.00704 0.96655 0.95667 1.21271 0.95312 1.00662 0.96988 1.21945 0.77633 0.87547 0.86183 1.90644 1.52576 1.17549 1.85780 1.45891 1.67249 1.12805 1.08111 1.20902 0.98039 0.93324 0.83875 1.19452 0.97113 0.96900 0.90453 1.20336 0.95192 0.97690 1.38444 0.93681 1.25700 0.96380 0.99115 0.95891 1.70017 1.06018 1.34113 1.48039 0.86024 0.76568 0.82127 0.79680 1.19412 1.23010 1.16426 1.22882 0.92287 1.00100 1.03829 1.23020 1.04926 0.99055 0.96005 0.89471 0.91620 0.89940 0.76096 0.90615 0.89370 0.85844 0.84661 0.84189 0.84075 0.85203 0.75065 0.94559 0.92349 0.92655 0.88036 0.89680 0.90311 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.06 71.98 0.58 -2.46 16 2 C 0.14 3.63 1.02 -11.54 -0.01 3.62 16 3 O -0.55 -14.14 11.72 -148.98 -1.75 -15.88 16 4 C -0.09 -2.15 4.26 29.85 0.13 -2.02 16 5 C -0.08 -1.72 4.24 -19.86 -0.08 -1.80 16 6 C -0.12 -2.43 9.41 22.27 0.21 -2.22 16 7 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 8 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 9 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 10 C -0.12 -2.33 7.85 22.27 0.17 -2.15 16 11 C 0.48 16.31 6.71 87.66 0.59 16.89 16 12 O -0.58 -23.31 16.01 -3.03 -0.05 -23.36 16 13 N -0.69 -25.07 5.40 -463.07 -2.50 -27.58 16 14 C 0.16 6.59 5.18 86.38 0.45 7.04 16 15 C -0.04 -1.61 0.86 -52.93 -0.05 -1.66 16 16 C -0.48 -25.17 9.13 25.60 0.23 -24.94 16 17 H 0.04 2.62 8.06 -2.91 -0.02 2.59 16 18 C 0.03 1.52 5.47 84.65 0.46 1.98 16 19 N -0.94 -56.66 13.96 21.45 0.30 -56.36 16 20 Si 0.93 43.67 24.78 68.60 1.70 45.37 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 23 H -0.24 -10.58 5.83 99.48 0.58 -10.00 16 24 C -0.15 -5.51 9.96 30.62 0.30 -5.21 16 25 C -0.19 -7.36 7.42 30.62 0.23 -7.13 16 26 H 0.09 1.83 6.14 -2.38 -0.01 1.82 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.39 8.63 9.02 -74.06 -0.67 7.96 16 30 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 31 H 0.09 2.21 7.62 -2.39 -0.02 2.19 16 32 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.13 2.11 8.03 -2.91 -0.02 2.08 16 37 H 0.41 14.83 7.61 -92.71 -0.71 14.12 16 38 H 0.04 1.65 7.01 -2.39 -0.02 1.63 16 39 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 40 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.10 3.08 8.14 -2.39 -0.02 3.07 16 42 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.08 3.21 7.01 -2.39 -0.02 3.19 16 44 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -66.12 359.57 1.10 -65.02 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: -0.49 Total: 38.59 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 3.89 Total: -25.79 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -2.20 Total: -83.94 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.79 Total: -39.24 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.70 Total: 45.37 kcal Total: -66.12 1.10 -65.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435952974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.462 kcal (2) G-P(sol) polarization free energy of solvation -66.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.63 seconds