Wall clock time and date at job start Tue Mar 31 2020 09:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99924 * 2 1 4 4 N 1.46498 * 109.46928 * 125.00009 * 3 2 1 5 5 C 1.46499 * 119.99989 * 283.84329 * 4 3 2 6 6 C 1.50701 * 109.47434 * 270.00280 * 5 4 3 7 7 H 1.07999 * 119.99282 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99947 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99713 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00143 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47088 * 90.00335 * 10 8 6 12 12 H 1.48507 * 109.46931 * 209.99834 * 10 8 6 13 13 H 1.48496 * 109.47101 * 329.99710 * 10 8 6 14 14 C 1.34782 * 120.00250 * 103.84631 * 4 3 2 15 15 O 1.21589 * 120.00104 * 186.69027 * 14 4 3 16 16 C 1.47531 * 119.99630 * 6.69210 * 14 4 3 17 17 C 1.39709 * 120.19278 * 326.11117 * 16 14 4 18 18 C 1.37789 * 119.90849 * 179.97438 * 17 16 14 19 19 C 1.38551 * 120.30057 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.80508 * 180.02562 * 19 18 17 21 21 C 1.53005 * 109.47074 * 299.99881 * 20 19 18 22 22 C 1.53000 * 109.47340 * 59.99729 * 20 19 18 23 23 C 1.38058 * 120.38672 * 0.02562 * 19 18 17 24 24 C 1.38700 * 120.08694 * 359.97438 * 23 19 18 25 25 O 1.35657 * 120.14988 * 180.27148 * 24 23 19 26 26 H 1.08000 * 119.99997 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99805 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99680 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47342 * 5.00101 * 3 2 1 30 30 H 1.09001 * 109.46907 * 244.99519 * 3 2 1 31 31 H 1.09004 * 109.47027 * 30.00327 * 5 4 3 32 32 H 1.09005 * 109.47050 * 150.00157 * 5 4 3 33 33 H 0.97008 * 119.99847 * 179.97438 * 9 8 6 34 34 H 1.07998 * 120.04471 * 359.97438 * 17 16 14 35 35 H 1.07998 * 119.84849 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.47493 * 180.02562 * 20 19 18 37 37 H 1.08992 * 109.46927 * 59.99852 * 21 20 19 38 38 H 1.09001 * 109.46990 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.46725 * 300.00042 * 21 20 19 40 40 H 1.09001 * 109.47066 * 60.00645 * 22 20 19 41 41 H 1.09001 * 109.46906 * 179.97438 * 22 20 19 42 42 H 1.08994 * 109.47437 * 299.99999 * 22 20 19 43 43 H 1.08007 * 119.95100 * 180.02562 * 23 19 18 44 44 H 0.96700 * 114.00460 * 269.73463 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.4921 1.5729 2.4866 6 6 2.5008 3.0530 2.7697 7 1 2.8459 3.7449 2.0156 8 6 2.0692 3.5237 3.9915 9 7 2.0772 4.8154 4.2387 10 14 1.4730 2.3269 5.2959 11 1 2.6184 1.9059 6.1421 12 1 0.4484 2.9883 6.1434 13 1 0.8781 1.1351 4.6394 14 6 4.3111 1.1348 0.9256 15 8 5.0663 1.0356 1.8734 16 6 4.8367 1.0395 -0.4496 17 6 4.0635 0.4599 -1.4586 18 6 4.5599 0.3744 -2.7412 19 6 5.8232 0.8613 -3.0357 20 6 6.3548 0.7626 -4.4423 21 6 6.4149 -0.7073 -4.8627 22 6 5.4303 1.5272 -5.3918 23 6 6.5977 1.4364 -2.0481 24 6 6.1139 1.5308 -0.7516 25 8 6.8716 2.1006 0.2186 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6214 1.4025 -0.9314 31 1 1.4739 1.1930 2.5700 32 1 3.1309 1.0615 3.2068 33 1 1.7732 5.1467 5.0983 34 1 3.0781 0.0795 -1.2337 35 1 3.9612 -0.0734 -3.5205 36 1 7.3553 1.1931 -4.4837 37 1 5.4147 -1.1382 -4.8213 38 1 6.7999 -0.7788 -5.8800 39 1 7.0736 -1.2520 -4.1862 40 1 5.3875 2.5744 -5.0924 41 1 5.8152 1.4561 -6.4091 42 1 4.4301 1.0962 -5.3504 43 1 7.5813 1.8141 -2.2856 44 1 7.4398 1.4769 0.6912 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436835195.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:19 Heat of formation + Delta-G solvation = -38.199324 kcal Electronic energy + Delta-G solvation = -25066.348200 eV Core-core repulsion = 21563.309652 eV Total energy + Delta-G solvation = -3503.038548 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78938 -39.93563 -38.45352 -37.36069 -35.84080 -35.00346 -33.81694 -32.00000 -30.75312 -29.72846 -27.90161 -27.22314 -25.55880 -23.87255 -23.72019 -21.43980 -21.33843 -20.40250 -19.12975 -18.66823 -18.33588 -17.67507 -16.88667 -16.68942 -16.22460 -16.12325 -15.99248 -15.43794 -14.93902 -14.82978 -14.68727 -14.45150 -14.29139 -14.20264 -13.72736 -13.43729 -13.27949 -13.07661 -13.01696 -12.74736 -12.55217 -12.38753 -12.32985 -12.22639 -11.99817 -11.90653 -11.78353 -11.63181 -11.44201 -10.86896 -10.70194 -10.43832 -9.77914 -9.68004 -9.43171 -8.37478 -6.43567 -0.15607 0.23588 1.25124 1.30211 1.34014 1.42932 1.79445 2.27055 2.28219 2.69827 2.96298 3.19193 3.50652 3.78137 3.78452 4.01217 4.13733 4.15186 4.24420 4.32114 4.36469 4.42879 4.47073 4.69477 4.77457 4.81181 4.85282 4.90586 4.90900 5.00076 5.05173 5.07532 5.17110 5.24047 5.30817 5.37885 5.40954 5.46839 5.47334 5.61354 5.66821 5.79916 5.87749 6.19750 6.56730 6.58251 6.73815 7.14896 7.30175 8.79868 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.004125 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.949609 B = 6785.601803 C = 7580.359396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.191 4.191 3 C 0.101 3.899 4 N -0.588 5.588 5 C 0.230 3.770 6 C -0.541 4.541 7 H 0.023 0.977 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.950 3.050 11 H -0.275 1.275 12 H -0.271 1.271 13 H -0.238 1.238 14 C 0.546 3.454 15 O -0.584 6.584 16 C -0.187 4.187 17 C -0.089 4.089 18 C -0.124 4.124 19 C -0.033 4.033 20 C -0.057 4.057 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.154 4.154 24 C 0.141 3.859 25 O -0.509 6.509 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.050 0.950 32 H 0.020 0.980 33 H 0.270 0.730 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.148 0.852 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 -14.912 -22.134 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.210 4.210 3 C -0.020 4.020 4 N -0.317 5.317 5 C 0.108 3.892 6 C -0.579 4.579 7 H 0.041 0.959 8 C -0.185 4.185 9 N -0.584 5.584 10 Si 0.772 3.228 11 H -0.200 1.200 12 H -0.195 1.195 13 H -0.161 1.161 14 C 0.336 3.664 15 O -0.465 6.465 16 C -0.190 4.190 17 C -0.107 4.107 18 C -0.142 4.142 19 C -0.034 4.034 20 C -0.075 4.075 21 C -0.200 4.200 22 C -0.202 4.202 23 C -0.172 4.172 24 C 0.095 3.905 25 O -0.322 6.322 26 H 0.144 0.856 27 H 0.116 0.884 28 H 0.140 0.860 29 H 0.085 0.915 30 H 0.142 0.858 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.183 0.817 35 H 0.182 0.818 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.166 0.834 44 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.163 -14.300 -21.669 26.154 hybrid contribution 0.252 0.188 1.680 1.709 sum 3.415 -14.112 -19.989 24.706 Atomic orbital electron populations 1.24134 0.95228 1.03265 0.96487 1.23166 0.96836 0.97566 1.03457 1.21654 0.93008 0.96910 0.90452 1.47806 1.06277 1.68501 1.09145 1.19274 0.94869 0.94363 0.80680 1.21530 1.43623 0.92152 1.00611 0.95907 1.25865 0.95085 0.97136 1.00454 1.70059 1.48641 1.14956 1.24722 0.85690 0.78722 0.79677 0.78730 1.20049 1.19539 1.16119 1.18733 0.82134 0.76202 0.89283 1.90653 1.57879 1.52739 1.45279 1.20438 0.97671 1.07304 0.93627 1.22078 0.99790 0.96497 0.92369 1.21277 0.95849 1.00940 0.96123 1.20282 0.93510 0.93664 0.95905 1.20260 1.00087 0.98205 0.88952 1.21864 1.02781 0.93508 1.01839 1.21882 0.99740 0.99570 0.99056 1.21443 1.02109 1.02693 0.90981 1.18788 0.89342 0.92978 0.89392 1.84679 1.58701 1.38041 1.50761 0.85610 0.88367 0.85956 0.91506 0.85804 0.93179 0.96221 0.92128 0.81688 0.81754 0.89684 0.91571 0.90751 0.93013 0.93492 0.90640 0.91511 0.83405 0.73497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 14.32 67.78 0.97 -2.37 16 2 C -0.19 -4.90 8.23 25.64 0.21 -4.69 16 3 C 0.10 3.38 5.37 85.63 0.46 3.84 16 4 N -0.59 -26.35 2.48 -834.27 -2.07 -28.42 16 5 C 0.23 11.97 4.23 85.63 0.36 12.33 16 6 C -0.54 -33.66 9.94 25.60 0.25 -33.40 16 7 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 8 C 0.01 0.78 5.47 84.65 0.46 1.24 16 9 N -0.94 -61.60 13.96 21.44 0.30 -61.30 16 10 Si 0.95 45.91 27.47 68.60 1.88 47.80 16 11 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 13 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 14 C 0.55 25.19 7.28 86.69 0.63 25.82 16 15 O -0.58 -31.51 15.45 13.32 0.21 -31.31 16 16 C -0.19 -6.65 5.53 -20.01 -0.11 -6.76 16 17 C -0.09 -2.29 7.42 22.52 0.17 -2.13 16 18 C -0.12 -2.35 8.68 22.24 0.19 -2.15 16 19 C -0.03 -0.64 4.79 -19.83 -0.09 -0.73 16 20 C -0.06 -0.72 3.09 -11.54 -0.04 -0.75 16 21 C -0.14 -1.40 9.01 71.98 0.65 -0.75 16 22 C -0.15 -1.61 9.00 71.98 0.65 -0.96 16 23 C -0.15 -3.78 9.59 22.34 0.21 -3.56 16 24 C 0.14 4.73 6.68 22.84 0.15 4.88 16 25 O -0.51 -19.05 12.11 -72.41 -0.88 -19.92 16 26 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 27 H 0.10 2.21 7.84 -2.91 -0.02 2.19 16 28 H 0.12 2.80 7.71 -2.91 -0.02 2.78 16 29 H 0.07 2.42 7.79 -2.39 -0.02 2.40 16 30 H 0.12 3.60 3.80 -2.69 -0.01 3.59 16 31 H 0.05 2.40 6.99 -2.39 -0.02 2.38 16 32 H 0.02 1.09 6.77 -2.38 -0.02 1.08 16 33 H 0.27 16.25 8.31 -92.70 -0.77 15.47 16 34 H 0.17 3.75 3.65 -2.91 -0.01 3.74 16 35 H 0.17 1.91 7.07 -2.91 -0.02 1.89 16 36 H 0.08 1.01 7.86 -2.39 -0.02 0.99 16 37 H 0.07 0.57 7.37 -2.39 -0.02 0.56 16 38 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.65 7.37 -2.39 -0.02 0.64 16 43 H 0.15 3.01 7.93 -2.91 -0.02 2.99 16 44 H 0.41 12.21 9.06 -74.06 -0.67 11.54 16 Total: -1.00 -84.05 359.04 4.86 -79.18 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.28 Total: 24.12 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 5.13 Total: -10.15 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -1.77 Total: -89.72 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.67 Total: -51.23 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.80 kcal Total: -84.05 4.86 -79.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436835195.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.986 kcal (2) G-P(sol) polarization free energy of solvation -84.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds