Wall clock time and date at job start Tue Mar 31 2020 09:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46902 * 2 1 4 4 C 1.50700 * 109.46743 * 119.99456 * 2 1 3 5 5 C 1.38543 * 119.80665 * 300.00482 * 4 2 1 6 6 C 1.37791 * 120.29741 * 180.02562 * 5 4 2 7 7 C 1.39702 * 119.90976 * 0.22780 * 6 5 4 8 8 C 1.47536 * 120.19184 * 179.75303 * 7 6 5 9 9 O 1.21590 * 120.00017 * 175.17299 * 8 7 6 10 10 N 1.34782 * 119.99943 * 355.17045 * 8 7 6 11 11 C 1.46497 * 120.00044 * 185.43351 * 10 8 7 12 12 C 1.52997 * 109.47320 * 184.71617 * 11 10 8 13 13 C 1.50701 * 115.54800 * 305.53206 * 12 11 10 14 14 H 1.07996 * 120.00417 * 145.07775 * 13 12 11 15 15 C 1.37882 * 120.00087 * 325.07394 * 13 12 11 16 16 N 1.31511 * 119.99939 * 1.15304 * 15 13 12 17 17 Si 1.86802 * 120.00013 * 181.14511 * 15 13 12 18 18 H 1.48507 * 109.46594 * 90.00534 * 17 15 13 19 19 H 1.48506 * 109.47113 * 210.00246 * 17 15 13 20 20 H 1.48497 * 109.47474 * 330.00629 * 17 15 13 21 21 C 1.52995 * 117.50214 * 159.86075 * 12 11 10 22 22 C 1.52997 * 117.50354 * 91.19766 * 12 11 10 23 23 C 1.40142 * 119.61569 * 359.49605 * 7 6 5 24 24 O 1.35656 * 120.15006 * 180.27368 * 23 7 6 25 25 C 1.38058 * 119.80174 * 120.02278 * 4 2 1 26 26 H 1.08995 * 109.47437 * 300.00659 * 1 2 3 27 27 H 1.09005 * 109.46786 * 60.00278 * 1 2 3 28 28 H 1.09001 * 109.46893 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47093 * 239.99762 * 2 1 3 30 30 H 1.09003 * 109.46944 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47173 * 299.99485 * 3 2 1 32 32 H 1.08995 * 109.47612 * 59.99449 * 3 2 1 33 33 H 1.07998 * 119.85325 * 0.02562 * 5 4 2 34 34 H 1.08006 * 120.03976 * 179.97438 * 6 5 4 35 35 H 0.96998 * 119.99851 * 5.43039 * 10 8 7 36 36 H 1.09001 * 109.46977 * 304.71151 * 11 10 8 37 37 H 1.09003 * 109.47367 * 64.71104 * 11 10 8 38 38 H 0.97004 * 120.00485 * 185.00354 * 16 15 13 39 39 H 1.09001 * 117.49732 * 0.02562 * 21 12 11 40 40 H 1.09009 * 117.49759 * 145.01824 * 21 12 11 41 41 H 1.08990 * 117.50314 * 214.98308 * 22 12 11 42 42 H 1.09002 * 117.49506 * 359.97438 * 22 12 11 43 43 H 0.96702 * 113.99492 * 270.25692 * 24 23 7 44 44 H 1.08003 * 119.95844 * 359.95699 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.6950 -0.2334 2.4868 6 6 2.1491 -0.8747 3.6188 7 6 2.9572 -2.0081 3.5005 8 6 3.4513 -2.6964 4.7083 9 8 4.0805 -3.7316 4.6036 10 7 3.2053 -2.1777 5.9277 11 6 3.7953 -2.7940 7.1186 12 6 3.2685 -2.0907 8.3710 13 6 3.4536 -0.5955 8.4032 14 1 2.7061 0.0314 8.8665 15 6 4.5774 -0.0276 7.8413 16 7 5.4768 -0.7889 7.2573 17 14 4.8224 1.8230 7.9095 18 1 5.5644 2.1788 9.1457 19 1 5.5981 2.2637 6.7223 20 1 3.4995 2.4976 7.9147 21 6 3.3688 -2.8437 9.6991 22 6 2.0075 -2.6605 9.0236 23 6 3.2913 -2.4907 2.2279 24 8 4.0706 -3.5937 2.1005 25 6 2.8261 -1.8322 1.0993 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.0734 0.6448 2.5794 34 1 1.8839 -0.4991 4.5961 35 1 2.6375 -1.3962 6.0168 36 1 3.5247 -3.8492 7.1535 37 1 4.8804 -2.6984 7.0774 38 1 6.3011 -0.3991 6.9263 39 1 3.8106 -3.8400 9.6806 40 1 3.5684 -2.2575 10.5962 41 1 1.3120 -1.9541 9.4766 42 1 1.5529 -3.5363 8.5604 43 1 5.0181 -3.4036 2.0634 44 1 3.0844 -2.1981 0.1165 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000437002073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:52 Heat of formation + Delta-G solvation = -58.298854 kcal Electronic energy + Delta-G solvation = -24967.841627 eV Core-core repulsion = 21463.931498 eV Total energy + Delta-G solvation = -3503.910129 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 9.61 seconds Orbital eigenvalues (eV) -41.42148 -39.83156 -38.51123 -38.07359 -35.81430 -34.67358 -34.10905 -31.60412 -30.51624 -27.92827 -27.90203 -27.22797 -24.77870 -23.67924 -22.99311 -21.70986 -21.14650 -20.95066 -19.19755 -18.39461 -17.92930 -17.29909 -16.74773 -16.40460 -16.16772 -15.92847 -15.85052 -15.26445 -15.13033 -14.80337 -14.64148 -14.30985 -14.08674 -13.70910 -13.66768 -13.34462 -13.15433 -12.93571 -12.89638 -12.68727 -12.56870 -12.29546 -12.20908 -12.05921 -11.95805 -11.66208 -11.52326 -11.46645 -10.95157 -10.74094 -10.58235 -10.15036 -9.93270 -9.73355 -9.46306 -7.95634 -6.21097 -0.16501 0.28141 1.42605 1.46826 1.54517 1.98610 2.40823 2.51285 2.78193 3.06818 3.24434 3.61898 3.69798 3.77955 3.99847 4.13269 4.24557 4.27674 4.34289 4.43336 4.48534 4.51998 4.74587 4.77862 4.81395 4.87478 4.89029 4.94092 4.99697 5.04909 5.10198 5.17036 5.24508 5.27017 5.35757 5.40190 5.44432 5.50942 5.58771 5.60873 5.80297 5.86767 5.95722 6.36699 6.76376 6.79496 6.96994 7.44072 7.50587 8.91943 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.004537 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.074991 B = 6169.913157 C = 7084.415789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.145 4.145 4 C -0.033 4.033 5 C -0.129 4.129 6 C -0.072 4.072 7 C -0.187 4.187 8 C 0.539 3.461 9 O -0.588 6.588 10 N -0.675 5.675 11 C 0.178 3.822 12 C 0.008 3.992 13 C -0.504 4.504 14 H 0.061 0.939 15 C 0.037 3.963 16 N -0.893 5.893 17 Si 0.949 3.051 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.261 1.261 21 C -0.198 4.198 22 C -0.189 4.189 23 C 0.149 3.851 24 O -0.495 6.495 25 C -0.155 4.155 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.155 0.845 34 H 0.133 0.867 35 H 0.402 0.598 36 H 0.013 0.987 37 H 0.080 0.920 38 H 0.257 0.743 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.402 0.598 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.327 5.444 -15.066 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.034 4.034 5 C -0.147 4.147 6 C -0.091 4.091 7 C -0.190 4.190 8 C 0.327 3.673 9 O -0.471 6.471 10 N -0.323 5.323 11 C 0.054 3.946 12 C 0.008 3.992 13 C -0.541 4.541 14 H 0.079 0.921 15 C -0.165 4.165 16 N -0.530 5.530 17 Si 0.775 3.225 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.185 1.185 21 C -0.236 4.236 22 C -0.226 4.226 23 C 0.103 3.897 24 O -0.307 6.307 25 C -0.173 4.173 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.172 0.828 34 H 0.151 0.849 35 H 0.238 0.762 36 H 0.031 0.969 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.261 0.739 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.244 4.457 -15.240 17.891 hybrid contribution 0.937 0.973 0.785 1.562 sum -7.308 5.429 -14.455 17.083 Atomic orbital electron populations 1.21874 0.93093 1.02136 1.03047 1.20255 0.96838 0.96354 0.93912 1.21878 1.00974 0.94372 1.03002 1.20253 0.93745 0.93445 0.95919 1.21171 1.01456 1.01231 0.90836 1.21424 0.94522 0.92632 1.00524 1.20551 1.05718 0.99537 0.93232 1.18540 0.80145 0.84502 0.84120 1.90678 1.43760 1.25257 1.87414 1.45536 1.49459 1.31926 1.05341 1.20760 0.99703 0.91052 0.83113 1.19285 0.96435 0.93964 0.89566 1.20709 1.06317 0.89801 1.37288 0.92103 1.25595 0.95828 1.01438 0.93635 1.70045 1.08456 1.36100 1.38356 0.85695 0.78522 0.81190 0.77126 1.20835 1.21534 1.18539 1.22959 1.01094 1.00690 0.98896 1.22943 0.90929 1.02481 1.06231 1.18743 0.93915 0.86128 0.90928 1.84680 1.21994 1.28770 1.95305 1.21474 1.01475 0.96201 0.98156 0.92085 0.90555 0.93016 0.89113 0.93148 0.90518 0.92214 0.82768 0.84906 0.76207 0.96868 0.90199 0.93280 0.90818 0.90142 0.89484 0.90261 0.73894 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.00 71.98 0.65 -1.17 16 2 C -0.06 -0.80 3.09 -11.54 -0.04 -0.84 16 3 C -0.15 -1.90 9.00 71.98 0.65 -1.26 16 4 C -0.03 -0.71 4.79 -19.83 -0.09 -0.80 16 5 C -0.13 -3.01 8.68 22.24 0.19 -2.82 16 6 C -0.07 -2.19 9.53 22.52 0.21 -1.98 16 7 C -0.19 -6.92 5.89 -20.01 -0.12 -7.03 16 8 C 0.54 24.63 7.75 86.69 0.67 25.30 16 9 O -0.59 -30.63 15.16 16.87 0.26 -30.37 16 10 N -0.68 -30.77 5.12 -466.27 -2.39 -33.16 16 11 C 0.18 8.83 4.63 86.38 0.40 9.23 16 12 C 0.01 0.39 2.06 -52.93 -0.11 0.28 16 13 C -0.50 -25.11 8.31 25.60 0.21 -24.90 16 14 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 15 C 0.04 1.84 5.29 84.66 0.45 2.29 16 16 N -0.89 -47.86 10.22 21.45 0.22 -47.64 16 17 Si 0.95 40.23 29.54 68.60 2.03 42.26 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 21 C -0.20 -8.60 9.96 30.62 0.30 -8.29 16 22 C -0.19 -7.71 9.92 30.62 0.30 -7.41 16 23 C 0.15 4.93 6.72 22.84 0.15 5.09 16 24 O -0.50 -17.15 11.59 -68.84 -0.80 -17.95 16 25 C -0.15 -3.84 9.59 22.34 0.21 -3.63 16 26 H 0.06 0.76 7.37 -2.39 -0.02 0.75 16 27 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 1.14 7.86 -2.39 -0.02 1.12 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.06 0.80 7.37 -2.39 -0.02 0.78 16 33 H 0.15 2.71 7.07 -2.91 -0.02 2.69 16 34 H 0.13 3.94 6.42 -2.91 -0.02 3.92 16 35 H 0.40 17.19 5.99 -92.71 -0.56 16.63 16 36 H 0.01 0.66 8.05 -2.39 -0.02 0.64 16 37 H 0.08 4.54 5.90 -2.39 -0.01 4.53 16 38 H 0.26 13.55 8.32 -92.71 -0.77 12.77 16 39 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.08 3.45 8.14 -2.38 -0.02 3.43 16 41 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 43 H 0.40 11.21 9.06 -74.06 -0.67 10.54 16 44 H 0.15 3.00 7.93 -2.91 -0.02 2.97 16 Total: -1.00 -64.78 361.45 3.17 -61.61 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: -0.20 Total: 43.19 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.06 Total: -17.94 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -2.17 Total: -80.80 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -0.54 Total: -48.32 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -64.78 3.17 -61.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437002073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.314 kcal (2) G-P(sol) polarization free energy of solvation -64.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.61 seconds