Wall clock time and date at job start Tue Mar 31 2020 07:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00013 * 2 1 4 4 H 1.08996 * 112.90451 * 341.24530 * 3 2 1 5 5 C 1.53954 * 113.66888 * 112.54788 * 3 2 1 6 6 C 1.53774 * 87.10950 * 139.88870 * 5 3 2 7 7 H 1.09004 * 113.61537 * 220.08659 * 6 5 3 8 8 N 1.46504 * 113.61497 * 89.19228 * 6 5 3 9 9 C 1.34771 * 120.00657 * 107.49649 * 8 6 5 10 10 O 1.21553 * 119.99410 * 0.02562 * 9 8 6 11 11 C 1.47880 * 120.00300 * 179.97438 * 9 8 6 12 12 C 1.39916 * 120.02610 * 0.02562 * 11 9 8 13 13 C 1.38329 * 120.35794 * 180.02562 * 12 11 9 14 14 C 1.37752 * 120.41345 * 359.97380 * 13 12 11 15 15 C 1.40746 * 120.04076 * 0.02562 * 14 13 12 16 16 C 1.41436 * 120.17697 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00228 * 24.35792 * 16 15 14 18 18 C 1.39940 * 119.99928 * 204.35266 * 16 15 14 19 19 N 1.30822 * 119.99757 * 17.75225 * 18 16 15 20 20 Si 1.86801 * 119.99903 * 197.75597 * 18 16 15 21 21 H 1.48495 * 109.47161 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47168 * 119.99956 * 20 18 16 23 23 H 1.48498 * 109.46687 * 239.99946 * 20 18 16 24 24 C 1.39006 * 120.02559 * 179.72856 * 11 9 8 25 25 C 1.53772 * 87.08465 * 334.63834 * 6 5 3 26 26 C 1.53002 * 113.61789 * 139.98078 * 25 6 5 27 27 C 1.53001 * 113.61612 * 270.79948 * 25 6 5 28 28 H 1.09002 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47743 * 300.00234 * 1 2 3 30 30 H 1.09001 * 109.47065 * 60.00451 * 1 2 3 31 31 H 1.08997 * 113.53571 * 25.33599 * 5 3 2 32 32 H 1.08999 * 113.73893 * 254.47298 * 5 3 2 33 33 H 0.96998 * 119.99672 * 287.49810 * 8 6 5 34 34 H 1.07995 * 119.82190 * 359.97438 * 12 11 9 35 35 H 1.08005 * 119.79107 * 180.02562 * 13 12 11 36 36 H 1.08004 * 119.97787 * 180.02562 * 14 13 12 37 37 H 0.97005 * 119.99870 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.19859 * 359.97438 * 24 11 9 39 39 H 1.09000 * 109.47477 * 181.52859 * 26 25 6 40 40 H 1.08999 * 109.47003 * 61.52787 * 26 25 6 41 41 H 1.08998 * 109.46973 * 301.53366 * 26 25 6 42 42 H 1.09003 * 109.46940 * 298.46977 * 27 25 6 43 43 H 1.08999 * 109.46718 * 58.47235 * 27 25 6 44 44 H 1.09000 * 109.47258 * 178.47197 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0797 -0.3228 5 6 2.7555 1.6502 1.3023 6 6 3.8252 2.3174 0.4218 7 1 4.8451 2.1375 0.7618 8 7 3.5580 3.7307 0.1432 9 6 4.3003 4.6865 0.7363 10 8 5.1918 4.3759 1.5020 11 6 4.0309 6.1131 0.4547 12 6 3.0052 6.4711 -0.4270 13 6 2.7477 7.8034 -0.6958 14 6 3.4972 8.7928 -0.0985 15 6 4.5331 8.4520 0.7912 16 6 5.3048 9.4656 1.4056 17 1 4.8953 10.4575 1.5268 18 6 6.5990 9.1830 1.8568 19 7 7.2274 8.1225 1.4188 20 14 7.4293 10.3203 3.0843 21 1 6.5137 11.4404 3.4191 22 1 7.7567 9.5622 4.3184 23 1 8.6777 10.8626 2.4905 24 6 4.7925 7.0995 1.0705 25 6 3.3756 1.3718 -0.7044 26 6 3.3234 2.0387 -2.0805 27 6 4.1232 0.0370 -0.7191 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1176 0.7747 1.8413 32 1 2.2188 2.3497 1.9430 33 1 2.8468 3.9785 -0.4680 34 1 2.4119 5.7032 -0.9009 35 1 1.9534 8.0694 -1.3776 36 1 3.2897 9.8308 -0.3131 37 1 8.1247 7.9268 1.7312 38 1 5.5818 6.8278 1.7557 39 1 2.9724 1.3190 -2.8200 40 1 4.3201 2.3845 -2.3546 41 1 2.6407 2.8878 -2.0471 42 1 5.1859 0.2176 -0.8809 43 1 3.9818 -0.4691 0.2358 44 1 3.7345 -0.5883 -1.5228 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439848117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:14 Heat of formation + Delta-G solvation = -48.862636 kcal Electronic energy + Delta-G solvation = -24758.149319 eV Core-core repulsion = 21254.648375 eV Total energy + Delta-G solvation = -3503.500944 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.69799 -38.71412 -37.06324 -36.42245 -33.80955 -32.89601 -30.69186 -29.90278 -29.44335 -27.46811 -27.03677 -25.38980 -24.32899 -22.80892 -22.02286 -20.96527 -19.58855 -18.72050 -17.70872 -16.79451 -16.17689 -15.68852 -15.42905 -15.33462 -15.07136 -14.68103 -14.25382 -13.95283 -13.64845 -13.29530 -13.22433 -13.16095 -12.77523 -12.57717 -12.48154 -12.26476 -12.14821 -11.70674 -11.65495 -11.52221 -11.18825 -11.09944 -11.02726 -10.78485 -10.69543 -10.51123 -10.23745 -10.02937 -9.70867 -9.46662 -9.23895 -9.04511 -8.64831 -7.65508 -7.54475 -6.82019 -4.43251 2.18194 2.78908 3.07164 3.11853 3.13573 3.54879 3.67379 3.81955 3.90830 4.28800 4.43529 4.60835 4.74086 4.84737 5.09339 5.13546 5.21697 5.26295 5.44372 5.53396 5.58320 5.61715 5.63926 5.69527 5.78091 5.89797 5.91770 5.95815 6.04659 6.12679 6.23711 6.25784 6.31010 6.70002 6.86646 6.97121 6.99774 7.09973 7.19280 7.35866 7.67627 7.73671 7.90426 8.07172 8.17074 8.48708 8.78437 8.81361 8.93272 10.12671 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.003308 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.431948 B = 8463.277674 C = 8992.160785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.069 3.931 4 H 0.086 0.914 5 C -0.168 4.168 6 C 0.134 3.866 7 H 0.107 0.893 8 N -0.719 5.719 9 C 0.567 3.433 10 O -0.543 6.543 11 C -0.127 4.127 12 C -0.219 4.219 13 C -0.097 4.097 14 C -0.212 4.212 15 C 0.099 3.901 16 C -0.459 4.459 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.782 5.782 20 Si 0.910 3.090 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.274 1.274 24 C -0.092 4.092 25 C -0.089 4.089 26 C -0.137 4.137 27 C -0.115 4.115 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.398 0.602 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.284 0.716 38 H 0.134 0.866 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.011 -12.756 -4.033 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C 0.011 3.989 4 H 0.103 0.897 5 C -0.207 4.207 6 C 0.027 3.973 7 H 0.125 0.875 8 N -0.372 5.372 9 C 0.358 3.642 10 O -0.421 6.421 11 C -0.131 4.131 12 C -0.239 4.239 13 C -0.115 4.115 14 C -0.232 4.232 15 C 0.096 3.904 16 C -0.488 4.488 17 H 0.100 0.900 18 C -0.146 4.146 19 N -0.406 5.406 20 Si 0.734 3.266 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.112 4.112 25 C -0.090 4.090 26 C -0.195 4.195 27 C -0.173 4.173 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.234 0.766 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.152 0.848 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.008 -13.255 -3.466 15.870 hybrid contribution -0.254 0.818 0.130 0.867 sum -8.262 -12.437 -3.336 15.300 Atomic orbital electron populations 1.22769 0.81616 1.02451 0.99908 1.87926 1.19166 1.27421 1.94561 1.24004 0.93324 0.84905 0.96648 0.89658 1.23977 0.98370 1.01103 0.97259 1.21631 0.99955 0.80732 0.94952 0.87461 1.45692 1.37970 1.04454 1.49088 1.18865 0.80260 0.86219 0.78899 1.90697 1.31785 1.83451 1.36127 1.19454 1.00198 0.90694 1.02730 1.20306 1.02165 0.95292 1.06175 1.20425 0.98701 0.92984 0.99407 1.21096 1.02398 0.97249 1.02479 1.17605 0.90956 0.92363 0.89446 1.19626 0.97855 0.97854 1.33447 0.90027 1.25974 0.97579 0.95685 0.95395 1.69796 1.12329 1.24129 1.34355 0.86234 0.79231 0.80670 0.80489 1.18337 1.19528 1.19906 1.21643 0.98712 0.91458 0.99353 1.22558 0.94823 0.96551 0.95093 1.21703 1.02582 0.99912 0.95259 1.21370 0.99070 0.94185 1.02660 0.89912 0.94115 0.94172 0.88583 0.90755 0.76554 0.89451 0.88936 0.88617 0.90456 0.84835 0.92299 0.91642 0.92656 0.92349 0.91851 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.34 16 2 O -0.37 -4.15 9.84 -35.23 -0.35 -4.49 16 3 C 0.07 0.78 3.62 -25.83 -0.09 0.68 16 4 H 0.09 0.90 7.72 -51.93 -0.40 0.50 16 5 C -0.17 -2.13 7.37 -25.83 -0.19 -2.32 16 6 C 0.13 1.92 3.78 -67.12 -0.25 1.66 16 7 H 0.11 1.74 7.42 -51.93 -0.39 1.36 16 8 N -0.72 -11.78 4.72 -53.95 -0.25 -12.04 16 9 C 0.57 12.28 7.77 -12.32 -0.10 12.19 16 10 O -0.54 -13.55 15.93 5.32 0.08 -13.47 16 11 C -0.13 -2.98 5.87 -105.04 -0.62 -3.60 16 12 C -0.22 -4.54 9.55 -38.92 -0.37 -4.91 16 13 C -0.10 -2.04 10.01 -39.73 -0.40 -2.44 16 14 C -0.21 -5.00 9.78 -38.81 -0.38 -5.38 16 15 C 0.10 2.60 5.57 -106.87 -0.60 2.00 16 16 C -0.46 -11.99 9.05 -37.73 -0.34 -12.33 16 17 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 18 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 19 N -0.78 -20.63 10.96 55.55 0.61 -20.02 16 20 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 C -0.09 -2.43 8.24 -38.44 -0.32 -2.74 16 25 C -0.09 -1.03 1.33 -153.70 -0.20 -1.23 16 26 C -0.14 -1.49 8.61 37.16 0.32 -1.17 16 27 C -0.12 -1.22 8.43 37.16 0.31 -0.91 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 1.16 7.64 -51.93 -0.40 0.76 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.40 5.71 5.16 -40.82 -0.21 5.50 16 34 H 0.09 1.49 6.38 -52.49 -0.33 1.15 16 35 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 37 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 38 H 0.13 3.84 5.75 -52.49 -0.30 3.54 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.58 6.59 -51.93 -0.34 0.24 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.68 7.22 -51.93 -0.38 0.30 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -29.43 358.65 -8.27 -37.71 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.52 Total: 10.66 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -2.22 Total: -17.41 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.35 Total: -32.06 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.26 Total: -17.96 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.43 -8.27 -37.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439848117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.154 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds