Wall clock time and date at job start Tue Mar 31 2020 07:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00013 * 2 1 4 4 H 1.08996 * 112.90451 * 341.24530 * 3 2 1 5 5 C 1.53954 * 113.66888 * 112.54788 * 3 2 1 6 6 C 1.53774 * 87.10950 * 139.88870 * 5 3 2 7 7 H 1.09004 * 113.61537 * 220.08659 * 6 5 3 8 8 N 1.46504 * 113.61497 * 89.19228 * 6 5 3 9 9 C 1.34771 * 120.00657 * 107.49649 * 8 6 5 10 10 O 1.21553 * 119.99410 * 0.02562 * 9 8 6 11 11 C 1.47880 * 120.00300 * 179.97438 * 9 8 6 12 12 C 1.39916 * 120.02610 * 0.02562 * 11 9 8 13 13 C 1.38329 * 120.35794 * 180.02562 * 12 11 9 14 14 C 1.37752 * 120.41345 * 359.97380 * 13 12 11 15 15 C 1.40746 * 120.04076 * 0.02562 * 14 13 12 16 16 C 1.41436 * 120.17697 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00228 * 24.35792 * 16 15 14 18 18 C 1.39940 * 119.99928 * 204.35266 * 16 15 14 19 19 N 1.30822 * 119.99757 * 17.75225 * 18 16 15 20 20 Si 1.86801 * 119.99903 * 197.75597 * 18 16 15 21 21 H 1.48495 * 109.47161 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47168 * 119.99956 * 20 18 16 23 23 H 1.48498 * 109.46687 * 239.99946 * 20 18 16 24 24 C 1.39006 * 120.02559 * 179.72856 * 11 9 8 25 25 C 1.53772 * 87.08465 * 334.63834 * 6 5 3 26 26 C 1.53002 * 113.61789 * 139.98078 * 25 6 5 27 27 C 1.53001 * 113.61612 * 270.79948 * 25 6 5 28 28 H 1.09002 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47743 * 300.00234 * 1 2 3 30 30 H 1.09001 * 109.47065 * 60.00451 * 1 2 3 31 31 H 1.08997 * 113.53571 * 25.33599 * 5 3 2 32 32 H 1.08999 * 113.73893 * 254.47298 * 5 3 2 33 33 H 0.96998 * 119.99672 * 287.49810 * 8 6 5 34 34 H 1.07995 * 119.82190 * 359.97438 * 12 11 9 35 35 H 1.08005 * 119.79107 * 180.02562 * 13 12 11 36 36 H 1.08004 * 119.97787 * 180.02562 * 14 13 12 37 37 H 0.97005 * 119.99870 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.19859 * 359.97438 * 24 11 9 39 39 H 1.09000 * 109.47477 * 181.52859 * 26 25 6 40 40 H 1.08999 * 109.47003 * 61.52787 * 26 25 6 41 41 H 1.08998 * 109.46973 * 301.53366 * 26 25 6 42 42 H 1.09003 * 109.46940 * 298.46977 * 27 25 6 43 43 H 1.08999 * 109.46718 * 58.47235 * 27 25 6 44 44 H 1.09000 * 109.47258 * 178.47197 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0797 -0.3228 5 6 2.7555 1.6502 1.3023 6 6 3.8252 2.3174 0.4218 7 1 4.8451 2.1375 0.7618 8 7 3.5580 3.7307 0.1432 9 6 4.3003 4.6865 0.7363 10 8 5.1918 4.3759 1.5020 11 6 4.0309 6.1131 0.4547 12 6 3.0052 6.4711 -0.4270 13 6 2.7477 7.8034 -0.6958 14 6 3.4972 8.7928 -0.0985 15 6 4.5331 8.4520 0.7912 16 6 5.3048 9.4656 1.4056 17 1 4.8953 10.4575 1.5268 18 6 6.5990 9.1830 1.8568 19 7 7.2274 8.1225 1.4188 20 14 7.4293 10.3203 3.0843 21 1 6.5137 11.4404 3.4191 22 1 7.7567 9.5622 4.3184 23 1 8.6777 10.8626 2.4905 24 6 4.7925 7.0995 1.0705 25 6 3.3756 1.3718 -0.7044 26 6 3.3234 2.0387 -2.0805 27 6 4.1232 0.0370 -0.7191 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.1176 0.7747 1.8413 32 1 2.2188 2.3497 1.9430 33 1 2.8468 3.9785 -0.4680 34 1 2.4119 5.7032 -0.9009 35 1 1.9534 8.0694 -1.3776 36 1 3.2897 9.8308 -0.3131 37 1 8.1247 7.9268 1.7312 38 1 5.5818 6.8278 1.7557 39 1 2.9724 1.3190 -2.8200 40 1 4.3201 2.3845 -2.3546 41 1 2.6407 2.8878 -2.0471 42 1 5.1859 0.2176 -0.8809 43 1 3.9818 -0.4691 0.2358 44 1 3.7345 -0.5883 -1.5228 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439848117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:05 Heat of formation + Delta-G solvation = -66.066563 kcal Electronic energy + Delta-G solvation = -24758.895338 eV Core-core repulsion = 21254.648375 eV Total energy + Delta-G solvation = -3504.246962 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 7.87 seconds Orbital eigenvalues (eV) -41.85916 -40.27280 -38.73554 -37.45800 -35.64466 -34.38819 -32.04394 -31.36290 -31.20445 -28.35450 -27.79970 -27.21285 -25.58549 -24.01578 -23.34115 -22.77677 -21.24978 -19.94793 -19.35353 -17.89788 -17.71346 -17.00669 -16.73641 -16.47382 -16.39274 -16.15281 -15.75224 -15.52077 -15.06965 -14.61132 -14.51047 -14.30211 -14.15860 -14.02548 -13.68664 -13.45810 -13.17099 -13.02733 -12.96312 -12.80338 -12.59651 -12.54937 -12.31935 -12.18651 -11.90614 -11.88790 -11.70381 -11.51284 -11.21711 -11.08810 -10.80887 -10.32374 -10.08635 -9.47733 -9.39066 -8.67378 -6.38634 0.36658 0.99990 1.36179 1.46155 1.52368 2.07451 2.14187 2.18877 2.77344 2.86015 3.29218 3.47636 3.68744 3.79712 3.85730 3.97874 4.22714 4.32933 4.41432 4.51662 4.54721 4.58100 4.61027 4.70326 4.79851 4.83125 4.88912 4.89703 4.92184 4.98212 5.07254 5.08627 5.11011 5.18785 5.30784 5.35807 5.39778 5.50451 5.56682 5.85868 5.91975 6.05014 6.28216 6.30098 6.49861 6.66924 6.87544 6.94166 7.29393 8.29497 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.003308 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.431948 B = 8463.277674 C = 8992.160785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.384 6.384 3 C 0.082 3.918 4 H 0.100 0.900 5 C -0.166 4.166 6 C 0.118 3.882 7 H 0.081 0.919 8 N -0.693 5.693 9 C 0.564 3.436 10 O -0.588 6.588 11 C -0.138 4.138 12 C -0.197 4.197 13 C -0.094 4.094 14 C -0.217 4.217 15 C 0.067 3.933 16 C -0.497 4.497 17 H 0.084 0.916 18 C 0.029 3.971 19 N -0.824 5.824 20 Si 0.982 3.018 21 H -0.251 1.251 22 H -0.271 1.271 23 H -0.264 1.264 24 C -0.131 4.131 25 C -0.079 4.079 26 C -0.138 4.138 27 C -0.114 4.114 28 H 0.097 0.903 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.411 0.589 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.109 0.891 37 H 0.286 0.714 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.698 -13.565 -5.744 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.303 6.303 3 C 0.024 3.976 4 H 0.118 0.882 5 C -0.205 4.205 6 C 0.012 3.988 7 H 0.099 0.901 8 N -0.345 5.345 9 C 0.354 3.646 10 O -0.469 6.469 11 C -0.141 4.141 12 C -0.217 4.217 13 C -0.112 4.112 14 C -0.237 4.237 15 C 0.065 3.935 16 C -0.526 4.526 17 H 0.102 0.898 18 C -0.186 4.186 19 N -0.450 5.450 20 Si 0.803 3.197 21 H -0.174 1.174 22 H -0.196 1.196 23 H -0.189 1.189 24 C -0.151 4.151 25 C -0.080 4.080 26 C -0.195 4.195 27 C -0.172 4.172 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.250 0.750 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.754 -14.089 -5.219 18.477 hybrid contribution 0.400 0.912 0.552 1.139 sum -10.354 -13.178 -4.666 17.396 Atomic orbital electron populations 1.22978 0.80021 1.03787 1.00633 1.87909 1.20904 1.26983 1.94498 1.23858 0.93298 0.85642 0.94848 0.88219 1.23955 0.97837 1.00798 0.97917 1.21820 0.99375 0.79861 0.97766 0.90053 1.45404 1.36802 1.04609 1.47702 1.18756 0.80358 0.86558 0.78930 1.90675 1.33924 1.83955 1.38316 1.19752 1.00428 0.91169 1.02785 1.20821 1.00414 0.96716 1.03739 1.20922 0.98905 0.92349 0.99031 1.21414 1.01663 0.98853 1.01744 1.17944 0.92369 0.92429 0.90736 1.19890 0.98864 0.98190 1.35630 0.89795 1.26858 0.97939 0.97120 0.96678 1.69896 1.12784 1.26254 1.36074 0.85156 0.78348 0.78582 0.77644 1.17405 1.19602 1.18867 1.21440 0.99865 0.92753 1.01054 1.22504 0.94955 0.95924 0.94599 1.21729 1.02208 1.00639 0.94955 1.21377 0.98960 0.93817 1.03027 0.88423 0.93869 0.92927 0.88211 0.91550 0.74950 0.84697 0.84253 0.87337 0.90333 0.88437 0.90432 0.92831 0.91854 0.92579 0.92144 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.85 113.37 1.23 1.52 16 2 O -0.38 -7.38 9.84 -148.98 -1.47 -8.85 16 3 C 0.08 1.60 3.62 31.18 0.11 1.72 16 4 H 0.10 1.69 7.72 -2.39 -0.02 1.67 16 5 C -0.17 -4.01 7.37 31.18 0.23 -3.78 16 6 C 0.12 3.30 3.78 45.51 0.17 3.47 16 7 H 0.08 2.74 7.42 -2.39 -0.02 2.72 16 8 N -0.69 -21.86 4.72 -442.89 -2.09 -23.96 16 9 C 0.56 24.83 7.77 86.80 0.67 25.50 16 10 O -0.59 -30.92 15.93 -3.88 -0.06 -30.98 16 11 C -0.14 -6.50 5.87 -20.13 -0.12 -6.62 16 12 C -0.20 -7.57 9.55 22.70 0.22 -7.36 16 13 C -0.09 -3.65 10.01 22.18 0.22 -3.42 16 14 C -0.22 -10.03 9.78 22.77 0.22 -9.81 16 15 C 0.07 3.66 5.57 -21.32 -0.12 3.54 16 16 C -0.50 -27.07 9.05 23.47 0.21 -26.86 16 17 H 0.08 4.32 7.91 -2.91 -0.02 4.30 16 18 C 0.03 1.52 5.14 85.26 0.44 1.96 16 19 N -0.82 -46.27 10.96 21.82 0.24 -46.03 16 20 Si 0.98 39.84 29.60 68.60 2.03 41.87 16 21 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 24 C -0.13 -7.26 8.24 23.01 0.19 -7.07 16 25 C -0.08 -1.65 1.33 -51.66 -0.07 -1.72 16 26 C -0.14 -2.58 8.61 71.98 0.62 -1.96 16 27 C -0.11 -2.23 8.43 71.98 0.61 -1.62 16 28 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 2.33 7.64 -2.39 -0.02 2.31 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.41 10.48 5.16 -92.71 -0.48 10.00 16 34 H 0.14 3.85 6.38 -2.91 -0.02 3.83 16 35 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 37 H 0.29 14.78 8.30 -92.70 -0.77 14.01 16 38 H 0.10 6.08 5.75 -2.91 -0.02 6.06 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.07 6.59 -2.39 -0.02 1.05 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.21 7.22 -2.39 -0.02 1.19 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -68.80 358.65 4.02 -64.78 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.53 Total: 35.68 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 4.84 Total: -32.51 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -1.85 Total: -69.99 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.53 Total: -39.83 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -68.80 4.02 -64.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439848117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.286 kcal (2) G-P(sol) polarization free energy of solvation -68.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.87 seconds