Wall clock time and date at job start Tue Mar 31 2020 07:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99868 * 2 1 4 4 H 1.09000 * 112.90636 * 341.25387 * 3 2 1 5 5 C 1.53777 * 113.61034 * 112.50330 * 3 2 1 6 6 C 1.53785 * 87.07983 * 139.98273 * 5 3 2 7 7 H 1.08997 * 113.68666 * 89.12616 * 6 5 3 8 8 N 1.46494 * 113.61380 * 220.01412 * 6 5 3 9 9 C 1.34777 * 120.00523 * 252.49526 * 8 6 5 10 10 O 1.21545 * 119.99748 * 0.02562 * 9 8 6 11 11 C 1.47885 * 120.00064 * 180.02562 * 9 8 6 12 12 C 1.39921 * 120.02720 * 359.72973 * 11 9 8 13 13 C 1.38326 * 120.35707 * 180.25154 * 12 11 9 14 14 C 1.37749 * 120.41383 * 0.04585 * 13 12 11 15 15 C 1.40742 * 120.03972 * 359.95052 * 14 13 12 16 16 C 1.41436 * 120.17799 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00353 * 150.17897 * 16 15 14 18 18 C 1.39942 * 120.00049 * 330.17566 * 16 15 14 19 19 N 1.30821 * 119.99986 * 161.73255 * 18 16 15 20 20 Si 1.86801 * 119.99634 * 341.73112 * 18 16 15 21 21 H 1.48497 * 109.46947 * 95.41518 * 20 18 16 22 22 H 1.48502 * 109.46849 * 215.41325 * 20 18 16 23 23 H 1.48498 * 109.47200 * 335.41104 * 20 18 16 24 24 C 1.38994 * 120.02195 * 179.97438 * 11 9 8 25 25 C 1.53777 * 113.61417 * 210.00073 * 3 2 1 26 26 C 1.52994 * 113.61397 * 105.47413 * 25 3 2 27 27 C 1.53002 * 113.61618 * 334.56893 * 25 3 2 28 28 H 1.09001 * 109.47072 * 299.99685 * 1 2 3 29 29 H 1.08999 * 109.47170 * 59.99533 * 1 2 3 30 30 H 1.09001 * 109.46749 * 179.97438 * 1 2 3 31 31 H 1.08991 * 113.61915 * 25.43427 * 5 3 2 32 32 H 1.09004 * 113.61324 * 254.52966 * 5 3 2 33 33 H 0.97005 * 119.99458 * 72.50068 * 8 6 5 34 34 H 1.08000 * 119.81678 * 0.24835 * 12 11 9 35 35 H 1.08004 * 119.78915 * 179.97438 * 13 12 11 36 36 H 1.08002 * 119.98045 * 179.97438 * 14 13 12 37 37 H 0.97001 * 120.00041 * 179.97438 * 19 18 16 38 38 H 1.07995 * 120.20449 * 359.70598 * 24 11 9 39 39 H 1.09003 * 109.47463 * 157.49669 * 26 25 3 40 40 H 1.09008 * 109.47088 * 277.49628 * 26 25 3 41 41 H 1.09002 * 109.47335 * 37.49149 * 26 25 3 42 42 H 1.09002 * 109.46838 * 322.50225 * 27 25 3 43 43 H 1.08995 * 109.46747 * 82.50225 * 27 25 3 44 44 H 1.08998 * 109.46843 * 202.50650 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3142 2.0798 -0.3227 5 6 2.7534 1.6488 1.3018 6 6 3.8227 2.3182 0.4222 7 1 3.6235 3.3695 0.2144 8 7 5.1934 2.0788 0.8804 9 6 5.8950 3.0747 1.4568 10 8 5.3903 4.1715 1.5970 11 6 7.2789 2.8330 1.9188 12 6 7.8585 1.5691 1.7628 13 6 9.1506 1.3340 2.1971 14 6 9.8813 2.3407 2.7888 15 6 9.3152 3.6186 2.9542 16 6 10.0631 4.6544 3.5609 17 1 9.8848 5.6830 3.2836 18 6 11.0340 4.3468 4.5206 19 7 11.9584 5.2227 4.8200 20 14 11.0101 2.6853 5.3740 21 1 11.9305 1.7551 4.6721 22 1 11.4490 2.8464 6.7835 23 1 9.6317 2.1336 5.3448 24 6 8.0031 3.8599 2.5129 25 6 3.3755 1.3720 -0.7045 26 6 3.3234 2.0391 -2.0804 27 6 4.1241 0.0377 -0.7176 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1166 0.7741 1.8410 32 1 2.2140 2.3476 1.9412 33 1 5.5961 1.2033 0.7687 34 1 7.2939 0.7727 1.3008 35 1 9.5888 0.3548 2.0725 36 1 10.8895 2.1493 3.1258 37 1 12.6312 5.0096 5.4855 38 1 7.5601 4.8373 2.6346 39 1 4.3141 2.4108 -2.3418 40 1 3.0001 1.3114 -2.8249 41 1 2.6186 2.8702 -2.0548 42 1 3.9593 -0.4806 0.2271 43 1 3.7559 -0.5774 -1.5386 44 1 5.1904 0.2206 -0.8503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439848122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:27 Heat of formation + Delta-G solvation = -48.955454 kcal Electronic energy + Delta-G solvation = -24532.099929 eV Core-core repulsion = 21028.594960 eV Total energy + Delta-G solvation = -3503.504969 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -40.75957 -38.96271 -37.31287 -36.57504 -33.76673 -33.09937 -30.89775 -30.40616 -29.95334 -27.76948 -27.03310 -25.37264 -24.43443 -22.75591 -22.37595 -20.70031 -19.98135 -19.01831 -17.74592 -17.11641 -16.34930 -15.78088 -15.66314 -15.56139 -15.05945 -14.67027 -14.40963 -14.25529 -13.86031 -13.62217 -13.44133 -13.31598 -12.76429 -12.74973 -12.39572 -12.31169 -12.16231 -12.01641 -11.95782 -11.65485 -11.60691 -11.06398 -11.00190 -10.86772 -10.77908 -10.65680 -10.53542 -10.01280 -9.72590 -9.57917 -9.42422 -9.14019 -8.75846 -7.87269 -7.76378 -7.01048 -4.55776 1.90785 2.51255 3.05189 3.17166 3.25697 3.30891 3.58940 3.79765 3.92850 4.17501 4.30745 4.48394 4.58032 4.72296 4.97541 5.01403 5.11089 5.15968 5.28618 5.33515 5.36800 5.46337 5.49902 5.53460 5.68769 5.79372 5.80543 5.84093 5.86763 5.96781 6.02675 6.14714 6.22483 6.39303 6.65525 6.66528 6.75695 6.97804 6.98820 7.20889 7.40295 7.49485 7.74712 7.80939 8.01726 8.27719 8.52720 8.68732 8.72961 10.01124 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029848 B = 0.003016 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.860161 B = 9280.561233 C = 9452.886492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.071 3.929 4 H 0.089 0.911 5 C -0.169 4.169 6 C 0.135 3.865 7 H 0.116 0.884 8 N -0.719 5.719 9 C 0.565 3.435 10 O -0.549 6.549 11 C -0.109 4.109 12 C -0.216 4.216 13 C -0.083 4.083 14 C -0.222 4.222 15 C 0.082 3.918 16 C -0.442 4.442 17 H 0.094 0.906 18 C 0.083 3.917 19 N -0.804 5.804 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.244 1.244 24 C -0.135 4.135 25 C -0.090 4.090 26 C -0.137 4.137 27 C -0.125 4.125 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.402 0.598 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.286 0.714 38 H 0.115 0.885 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.767 -10.872 -9.110 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.013 3.987 4 H 0.107 0.893 5 C -0.208 4.208 6 C 0.029 3.971 7 H 0.134 0.866 8 N -0.372 5.372 9 C 0.355 3.645 10 O -0.427 6.427 11 C -0.112 4.112 12 C -0.236 4.236 13 C -0.101 4.101 14 C -0.241 4.241 15 C 0.079 3.921 16 C -0.471 4.471 17 H 0.112 0.888 18 C -0.136 4.136 19 N -0.427 5.427 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.217 1.217 23 H -0.167 1.167 24 C -0.155 4.155 25 C -0.091 4.091 26 C -0.195 4.195 27 C -0.182 4.182 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.240 0.760 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.783 -10.099 -8.870 21.502 hybrid contribution 0.129 -0.860 0.426 0.968 sum -16.654 -10.959 -8.444 21.651 Atomic orbital electron populations 1.22780 0.81485 1.02588 0.99868 1.87942 1.19255 1.27090 1.94552 1.23673 0.93257 0.85226 0.96548 0.89268 1.23976 0.97847 1.01505 0.97452 1.22169 0.81603 0.99715 0.93652 0.86640 1.45873 1.14073 1.14901 1.62387 1.18829 0.86142 0.83469 0.76057 1.90684 1.71467 1.24241 1.56301 1.19432 0.92291 0.95792 1.03679 1.20376 0.96854 0.95376 1.11003 1.20509 0.94106 0.97479 0.98011 1.21177 0.99634 0.95245 1.08091 1.17700 0.90831 0.92254 0.91342 1.19522 1.13462 0.95640 1.18433 0.88841 1.26169 0.92347 0.98947 0.96147 1.69689 1.09946 1.36574 1.26520 0.86312 0.81250 0.81440 0.77297 1.19540 1.21663 1.16680 1.21273 0.93568 0.98048 1.02641 1.22565 0.94729 0.96678 0.95093 1.21760 1.02415 1.00079 0.95220 1.21407 0.99219 0.94583 1.02972 0.94079 0.94148 0.89821 0.88769 0.90775 0.76029 0.88692 0.88275 0.87883 0.90313 0.86670 0.91816 0.92260 0.92460 0.91672 0.91765 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.31 16 2 O -0.37 -3.74 9.80 -35.23 -0.35 -4.08 16 3 C 0.07 0.70 3.72 -25.92 -0.10 0.60 16 4 H 0.09 0.75 7.69 -51.93 -0.40 0.35 16 5 C -0.17 -1.92 7.36 -25.92 -0.19 -2.11 16 6 C 0.13 1.71 3.69 -67.12 -0.25 1.46 16 7 H 0.12 1.61 7.42 -51.93 -0.39 1.23 16 8 N -0.72 -10.76 5.18 -53.95 -0.28 -11.04 16 9 C 0.56 11.07 7.77 -12.31 -0.10 10.98 16 10 O -0.55 -12.29 15.93 5.33 0.08 -12.20 16 11 C -0.11 -2.33 5.87 -105.04 -0.62 -2.94 16 12 C -0.22 -4.18 9.55 -38.92 -0.37 -4.55 16 13 C -0.08 -1.69 10.01 -39.73 -0.40 -2.08 16 14 C -0.22 -5.17 7.17 -38.81 -0.28 -5.45 16 15 C 0.08 2.06 5.10 -106.87 -0.55 1.52 16 16 C -0.44 -11.91 9.57 -37.73 -0.36 -12.27 16 17 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 18 C 0.08 2.16 5.40 -17.34 -0.09 2.06 16 19 N -0.80 -21.19 13.93 55.55 0.77 -20.42 16 20 Si 0.91 20.38 24.52 -169.99 -4.17 16.22 16 21 H -0.27 -5.78 6.71 56.52 0.38 -5.40 16 22 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.24 -5.59 6.86 56.52 0.39 -5.21 16 24 C -0.14 -3.26 9.34 -38.44 -0.36 -3.62 16 25 C -0.09 -0.91 1.35 -153.70 -0.21 -1.12 16 26 C -0.14 -1.26 9.19 37.15 0.34 -0.92 16 27 C -0.12 -1.23 7.44 37.16 0.28 -0.95 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.12 7.65 -51.93 -0.40 0.73 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.40 5.32 4.68 -40.82 -0.19 5.13 16 34 H 0.10 1.49 6.38 -52.49 -0.33 1.15 16 35 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.10 2.38 4.72 -52.49 -0.25 2.13 16 37 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 38 H 0.12 2.83 7.64 -52.49 -0.40 2.43 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 41 H 0.06 0.48 7.94 -51.93 -0.41 0.06 16 42 H 0.06 0.67 7.18 -51.93 -0.37 0.29 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.58 7.10 -51.93 -0.37 0.21 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -29.22 353.22 -7.24 -36.46 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.49 Total: 7.83 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -2.15 Total: -18.09 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.49 Total: -31.46 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.26 Total: -16.28 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.17 Total: 16.22 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.22 -7.24 -36.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439848122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.495 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds