Wall clock time and date at job start Tue Mar 31 2020 07:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 113.99780 * 2 1 4 4 H 1.08999 * 112.85048 * 18.79864 * 3 2 1 5 5 C 1.53785 * 113.60810 * 247.49686 * 3 2 1 6 6 C 1.53791 * 87.08040 * 270.88134 * 5 3 2 7 7 H 1.09003 * 113.61201 * 89.11687 * 6 5 3 8 8 N 1.46495 * 113.61547 * 220.02397 * 6 5 3 9 9 C 1.34779 * 119.99773 * 252.49787 * 8 6 5 10 10 O 1.21544 * 119.99878 * 359.97438 * 9 8 6 11 11 C 1.47890 * 119.99764 * 179.97438 * 9 8 6 12 12 C 1.39916 * 120.02418 * 0.02562 * 11 9 8 13 13 C 1.38333 * 120.35864 * 179.97438 * 12 11 9 14 14 C 1.37755 * 120.40898 * 0.02562 * 13 12 11 15 15 C 1.40753 * 120.03894 * 0.02562 * 14 13 12 16 16 C 1.41446 * 120.17510 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99575 * 24.33192 * 16 15 14 18 18 C 1.39933 * 119.99455 * 204.33864 * 16 15 14 19 19 N 1.30825 * 120.00567 * 17.72719 * 18 16 15 20 20 Si 1.86807 * 119.99574 * 197.72780 * 18 16 15 21 21 H 1.48496 * 109.46987 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47505 * 119.99895 * 20 18 16 23 23 H 1.48505 * 109.46913 * 239.99979 * 20 18 16 24 24 C 1.38994 * 120.02456 * 179.72658 * 11 9 8 25 25 C 1.53776 * 113.61503 * 150.00222 * 3 2 1 26 26 C 1.53011 * 113.61368 * 334.56079 * 25 3 2 27 27 C 1.52997 * 113.68916 * 203.67697 * 25 3 2 28 28 H 1.09001 * 109.47020 * 300.00114 * 1 2 3 29 29 H 1.08997 * 109.46779 * 60.00581 * 1 2 3 30 30 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 31 31 H 1.09003 * 113.60850 * 156.33767 * 5 3 2 32 32 H 1.08994 * 113.61672 * 25.43193 * 5 3 2 33 33 H 0.97003 * 120.00292 * 72.49288 * 8 6 5 34 34 H 1.07997 * 119.82329 * 359.97438 * 12 11 9 35 35 H 1.07997 * 119.79695 * 180.02562 * 13 12 11 36 36 H 1.08002 * 119.97974 * 180.02562 * 14 13 12 37 37 H 0.97005 * 119.99746 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.20283 * 359.97438 * 24 11 9 39 39 H 1.08996 * 109.47189 * 157.50008 * 26 25 3 40 40 H 1.08997 * 109.47206 * 277.50070 * 26 25 3 41 41 H 1.08998 * 109.46953 * 37.50038 * 26 25 3 42 42 H 1.08999 * 109.46880 * 322.45673 * 27 25 3 43 43 H 1.08996 * 109.47490 * 82.45829 * 27 25 3 44 44 H 1.09002 * 109.46900 * 202.46412 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3137 2.0790 0.3237 5 6 2.7534 1.6489 -1.3018 6 6 4.0062 1.0331 -0.6565 7 1 4.1085 -0.0372 -0.8359 8 7 5.2363 1.7782 -0.9351 9 6 6.1522 1.2732 -1.7852 10 8 5.9577 0.1993 -2.3202 11 6 7.3938 2.0257 -2.0668 12 6 7.6184 3.2616 -1.4507 13 6 8.7776 3.9711 -1.7088 14 6 9.7237 3.4696 -2.5754 15 6 9.5147 2.2284 -3.2053 16 6 10.4845 1.7105 -4.0953 17 1 11.5151 2.0222 -4.0117 18 6 10.1084 0.7944 -5.0839 19 7 8.8498 0.6747 -5.4202 20 14 11.4036 -0.2579 -5.9234 21 1 12.7417 0.0668 -5.3674 22 1 11.1042 -1.6932 -5.6879 23 1 11.3945 0.0166 -7.3828 24 6 8.3413 1.5027 -2.9390 25 6 3.3755 1.3720 0.7044 26 6 3.5741 0.2826 1.7603 27 6 3.7358 2.7681 1.2163 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.8388 2.7197 -1.4863 32 1 2.3926 1.0963 -2.1693 33 1 5.3917 2.6351 -0.5078 34 1 6.8828 3.6640 -0.7700 35 1 8.9418 4.9240 -1.2279 36 1 10.6264 4.0291 -2.7715 37 1 8.5891 0.0394 -6.1053 38 1 8.1745 0.5466 -3.4128 39 1 4.6401 0.1268 1.9256 40 1 3.1030 0.5910 2.6936 41 1 3.1206 -0.6460 1.4139 42 1 3.3914 3.5167 0.5028 43 1 3.2556 2.9369 2.1801 44 1 4.8170 2.8454 1.3305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439848126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:48 Heat of formation + Delta-G solvation = -47.789565 kcal Electronic energy + Delta-G solvation = -24720.109629 eV Core-core repulsion = 21216.655217 eV Total energy + Delta-G solvation = -3503.454412 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64406 -38.71044 -37.01884 -36.36884 -33.77075 -32.84780 -30.68969 -29.91846 -29.40498 -27.71522 -26.76040 -25.39038 -24.49837 -22.56702 -21.98242 -20.92417 -19.52041 -18.76655 -17.65589 -16.96958 -15.98789 -15.67157 -15.48913 -15.27385 -14.90828 -14.63229 -14.22968 -13.98567 -13.75997 -13.35751 -13.17264 -13.10554 -12.77461 -12.50446 -12.40882 -12.24051 -12.00253 -11.81299 -11.64770 -11.58536 -11.15903 -11.07486 -11.01071 -10.73814 -10.68410 -10.47218 -10.18750 -9.98965 -9.66936 -9.56098 -9.20658 -8.94453 -8.52696 -7.61017 -7.50647 -6.78658 -4.39937 2.23609 2.82173 3.09281 3.14208 3.16187 3.43447 3.78585 3.87576 3.93574 4.35107 4.43593 4.64785 4.84294 4.89297 5.04404 5.11736 5.16504 5.22680 5.43572 5.51717 5.53393 5.56158 5.63010 5.70118 5.79790 5.85048 5.93015 6.02083 6.07267 6.20669 6.24569 6.29086 6.39977 6.73868 6.94744 7.00964 7.04017 7.08541 7.22960 7.39888 7.71974 7.78701 7.94706 8.14104 8.22415 8.52597 8.81961 8.85194 9.01692 10.16056 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021370 B = 0.003388 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.916734 B = 8261.722651 C = 9130.796974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.073 3.927 4 H 0.076 0.924 5 C -0.173 4.173 6 C 0.143 3.857 7 H 0.116 0.884 8 N -0.726 5.726 9 C 0.563 3.437 10 O -0.545 6.545 11 C -0.128 4.128 12 C -0.218 4.218 13 C -0.098 4.098 14 C -0.213 4.213 15 C 0.099 3.901 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.782 5.782 20 Si 0.909 3.091 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.274 1.274 24 C -0.092 4.092 25 C -0.094 4.094 26 C -0.132 4.132 27 C -0.134 4.134 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.398 0.602 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.284 0.716 38 H 0.134 0.866 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.470 2.370 10.836 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.014 3.986 4 H 0.094 0.906 5 C -0.212 4.212 6 C 0.038 3.962 7 H 0.134 0.866 8 N -0.380 5.380 9 C 0.354 3.646 10 O -0.423 6.423 11 C -0.131 4.131 12 C -0.239 4.239 13 C -0.116 4.116 14 C -0.233 4.233 15 C 0.096 3.904 16 C -0.488 4.488 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.733 3.267 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.112 4.112 25 C -0.095 4.095 26 C -0.190 4.190 27 C -0.191 4.191 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.235 0.765 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.645 1.294 10.268 17.126 hybrid contribution 0.255 0.284 -0.312 0.493 sum -13.390 1.578 9.956 16.761 Atomic orbital electron populations 1.22798 0.81138 1.02724 0.99851 1.87890 1.19419 1.26363 1.94463 1.23030 0.93789 0.85062 0.96678 0.90572 1.23964 0.97313 1.01829 0.98074 1.22387 0.82617 0.98073 0.93164 0.86579 1.45987 1.19853 1.24197 1.47917 1.18888 0.83309 0.84991 0.77396 1.90691 1.78591 1.22378 1.50631 1.19500 0.94735 0.96298 1.02578 1.20316 0.99410 0.97360 1.06766 1.20428 0.94600 0.97995 0.98578 1.21095 1.00284 0.97174 1.04729 1.17611 0.92110 0.89886 0.90779 1.19619 0.96055 1.21379 1.11793 0.90054 1.25969 0.96084 0.96141 0.96421 1.69801 1.17452 1.29077 1.24334 0.86242 0.81493 0.79988 0.78931 1.18352 1.19540 1.19935 1.21640 0.93483 1.00326 0.95769 1.22524 0.94512 0.96927 0.95526 1.21601 1.01744 0.98470 0.97151 1.21602 1.02370 0.94043 1.01122 0.94124 0.94026 0.89620 0.89032 0.90399 0.76473 0.89394 0.88946 0.88647 0.90490 0.84870 0.92433 0.92917 0.91205 0.92003 0.91844 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.35 16 2 O -0.36 -4.26 9.17 -35.23 -0.32 -4.58 16 3 C 0.07 0.80 3.79 -25.92 -0.10 0.70 16 4 H 0.08 0.68 7.83 -51.93 -0.41 0.27 16 5 C -0.17 -2.23 7.36 -25.91 -0.19 -2.42 16 6 C 0.14 2.16 3.63 -67.12 -0.24 1.91 16 7 H 0.12 2.07 7.42 -51.93 -0.39 1.68 16 8 N -0.73 -12.34 5.17 -53.94 -0.28 -12.62 16 9 C 0.56 12.61 7.77 -12.31 -0.10 12.52 16 10 O -0.55 -14.06 15.93 5.33 0.08 -13.97 16 11 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 12 C -0.22 -4.61 9.55 -38.92 -0.37 -4.98 16 13 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 14 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 15 C 0.10 2.63 5.57 -106.87 -0.60 2.04 16 16 C -0.46 -12.16 9.05 -37.73 -0.34 -12.50 16 17 H 0.08 2.05 7.91 -52.49 -0.41 1.63 16 18 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 19 N -0.78 -20.94 10.97 55.55 0.61 -20.34 16 20 Si 0.91 18.94 29.59 -169.99 -5.03 13.91 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 C -0.09 -2.49 8.24 -38.45 -0.32 -2.80 16 25 C -0.09 -1.07 1.35 -153.70 -0.21 -1.28 16 26 C -0.13 -1.50 9.04 37.16 0.34 -1.16 16 27 C -0.13 -1.27 8.05 37.16 0.30 -0.97 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.08 7.66 -51.93 -0.40 0.68 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.40 5.86 4.68 -40.82 -0.19 5.67 16 34 H 0.09 1.53 6.38 -52.49 -0.33 1.19 16 35 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 37 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 38 H 0.13 3.90 5.75 -52.49 -0.30 3.60 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.85 6.96 -51.93 -0.36 0.49 16 42 H 0.06 0.54 7.35 -51.93 -0.38 0.16 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.69 7.10 -51.93 -0.37 0.32 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -30.42 357.64 -8.24 -38.67 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.48 Total: 10.99 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.21 Total: -17.44 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.33 Total: -32.96 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.24 Total: -18.55 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.42 -8.24 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439848126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.122 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds