Wall clock time and date at job start Tue Mar 31 2020 07:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42908 * 113.99780 * 2 1 4 4 H 1.08999 * 112.85048 * 18.79864 * 3 2 1 5 5 C 1.53785 * 113.60810 * 247.49686 * 3 2 1 6 6 C 1.53791 * 87.08040 * 270.88134 * 5 3 2 7 7 H 1.09003 * 113.61201 * 89.11687 * 6 5 3 8 8 N 1.46495 * 113.61547 * 220.02397 * 6 5 3 9 9 C 1.34779 * 119.99773 * 252.49787 * 8 6 5 10 10 O 1.21544 * 119.99878 * 359.97438 * 9 8 6 11 11 C 1.47890 * 119.99764 * 179.97438 * 9 8 6 12 12 C 1.39916 * 120.02418 * 0.02562 * 11 9 8 13 13 C 1.38333 * 120.35864 * 179.97438 * 12 11 9 14 14 C 1.37755 * 120.40898 * 0.02562 * 13 12 11 15 15 C 1.40753 * 120.03894 * 0.02562 * 14 13 12 16 16 C 1.41446 * 120.17510 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99575 * 24.33192 * 16 15 14 18 18 C 1.39933 * 119.99455 * 204.33864 * 16 15 14 19 19 N 1.30825 * 120.00567 * 17.72719 * 18 16 15 20 20 Si 1.86807 * 119.99574 * 197.72780 * 18 16 15 21 21 H 1.48496 * 109.46987 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47505 * 119.99895 * 20 18 16 23 23 H 1.48505 * 109.46913 * 239.99979 * 20 18 16 24 24 C 1.38994 * 120.02456 * 179.72658 * 11 9 8 25 25 C 1.53776 * 113.61503 * 150.00222 * 3 2 1 26 26 C 1.53011 * 113.61368 * 334.56079 * 25 3 2 27 27 C 1.52997 * 113.68916 * 203.67697 * 25 3 2 28 28 H 1.09001 * 109.47020 * 300.00114 * 1 2 3 29 29 H 1.08997 * 109.46779 * 60.00581 * 1 2 3 30 30 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 31 31 H 1.09003 * 113.60850 * 156.33767 * 5 3 2 32 32 H 1.08994 * 113.61672 * 25.43193 * 5 3 2 33 33 H 0.97003 * 120.00292 * 72.49288 * 8 6 5 34 34 H 1.07997 * 119.82329 * 359.97438 * 12 11 9 35 35 H 1.07997 * 119.79695 * 180.02562 * 13 12 11 36 36 H 1.08002 * 119.97974 * 180.02562 * 14 13 12 37 37 H 0.97005 * 119.99746 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.20283 * 359.97438 * 24 11 9 39 39 H 1.08996 * 109.47189 * 157.50008 * 26 25 3 40 40 H 1.08997 * 109.47206 * 277.50070 * 26 25 3 41 41 H 1.08998 * 109.46953 * 37.50038 * 26 25 3 42 42 H 1.08999 * 109.46880 * 322.45673 * 27 25 3 43 43 H 1.08996 * 109.47490 * 82.45829 * 27 25 3 44 44 H 1.09002 * 109.46900 * 202.46412 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3137 2.0790 0.3237 5 6 2.7534 1.6489 -1.3018 6 6 4.0062 1.0331 -0.6565 7 1 4.1085 -0.0372 -0.8359 8 7 5.2363 1.7782 -0.9351 9 6 6.1522 1.2732 -1.7852 10 8 5.9577 0.1993 -2.3202 11 6 7.3938 2.0257 -2.0668 12 6 7.6184 3.2616 -1.4507 13 6 8.7776 3.9711 -1.7088 14 6 9.7237 3.4696 -2.5754 15 6 9.5147 2.2284 -3.2053 16 6 10.4845 1.7105 -4.0953 17 1 11.5151 2.0222 -4.0117 18 6 10.1084 0.7944 -5.0839 19 7 8.8498 0.6747 -5.4202 20 14 11.4036 -0.2579 -5.9234 21 1 12.7417 0.0668 -5.3674 22 1 11.1042 -1.6932 -5.6879 23 1 11.3945 0.0166 -7.3828 24 6 8.3413 1.5027 -2.9390 25 6 3.3755 1.3720 0.7044 26 6 3.5741 0.2826 1.7603 27 6 3.7358 2.7681 1.2163 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.8388 2.7197 -1.4863 32 1 2.3926 1.0963 -2.1693 33 1 5.3917 2.6351 -0.5078 34 1 6.8828 3.6640 -0.7700 35 1 8.9418 4.9240 -1.2279 36 1 10.6264 4.0291 -2.7715 37 1 8.5891 0.0394 -6.1053 38 1 8.1745 0.5466 -3.4128 39 1 4.6401 0.1268 1.9256 40 1 3.1030 0.5910 2.6936 41 1 3.1206 -0.6460 1.4139 42 1 3.3914 3.5167 0.5028 43 1 3.2556 2.9369 2.1801 44 1 4.8170 2.8454 1.3305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439848126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:45 Heat of formation + Delta-G solvation = -66.494302 kcal Electronic energy + Delta-G solvation = -24720.920728 eV Core-core repulsion = 21216.655217 eV Total energy + Delta-G solvation = -3504.265510 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -41.78550 -40.31453 -38.73586 -37.43068 -35.64154 -34.39012 -32.00710 -31.39930 -31.22878 -28.50173 -27.58058 -27.19482 -25.83608 -23.71312 -23.38167 -22.77238 -21.22105 -19.98896 -19.29537 -18.14308 -17.61880 -17.03192 -16.58065 -16.52454 -16.41283 -15.99486 -15.74079 -15.38480 -15.16356 -14.79971 -14.53222 -14.34535 -14.25981 -13.98314 -13.50378 -13.29116 -13.10934 -13.02333 -12.94319 -12.80149 -12.69852 -12.52744 -12.40502 -12.18593 -11.91512 -11.86966 -11.69560 -11.50736 -11.18364 -11.08839 -10.72277 -10.40677 -10.00460 -9.46479 -9.38541 -8.67279 -6.38695 0.37799 1.00148 1.35517 1.46068 1.52036 2.09168 2.18598 2.28586 2.67773 2.77985 3.37113 3.51040 3.69357 3.82743 3.96259 4.02868 4.23615 4.29997 4.42110 4.48788 4.54707 4.59010 4.60166 4.72034 4.78149 4.85277 4.88268 4.90537 4.98777 4.99534 5.08401 5.09038 5.13108 5.19608 5.31062 5.37469 5.45028 5.50963 5.59683 5.86863 5.92606 6.05268 6.28535 6.30972 6.52326 6.70688 6.87460 6.94642 7.33572 8.29607 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021370 B = 0.003388 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.916734 B = 8261.722651 C = 9130.796974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.391 6.391 3 C 0.085 3.915 4 H 0.111 0.889 5 C -0.171 4.171 6 C 0.121 3.879 7 H 0.077 0.923 8 N -0.699 5.699 9 C 0.558 3.442 10 O -0.593 6.593 11 C -0.139 4.139 12 C -0.196 4.196 13 C -0.094 4.094 14 C -0.217 4.217 15 C 0.067 3.933 16 C -0.497 4.497 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.826 5.826 20 Si 0.983 3.017 21 H -0.250 1.250 22 H -0.272 1.272 23 H -0.263 1.263 24 C -0.132 4.132 25 C -0.080 4.080 26 C -0.132 4.132 27 C -0.135 4.135 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.413 0.587 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.286 0.714 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.689 5.055 13.278 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.310 6.310 3 C 0.026 3.974 4 H 0.128 0.872 5 C -0.210 4.210 6 C 0.016 3.984 7 H 0.095 0.905 8 N -0.352 5.352 9 C 0.348 3.652 10 O -0.475 6.475 11 C -0.143 4.143 12 C -0.216 4.216 13 C -0.112 4.112 14 C -0.237 4.237 15 C 0.065 3.935 16 C -0.526 4.526 17 H 0.103 0.897 18 C -0.187 4.187 19 N -0.451 5.451 20 Si 0.803 3.197 21 H -0.173 1.173 22 H -0.197 1.197 23 H -0.188 1.188 24 C -0.153 4.153 25 C -0.082 4.082 26 C -0.189 4.189 27 C -0.192 4.192 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.076 0.924 33 H 0.253 0.747 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.128 0.872 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.895 4.028 12.758 20.021 hybrid contribution 0.494 -0.463 -0.916 1.139 sum -14.402 3.565 11.842 18.983 Atomic orbital electron populations 1.23001 0.79325 1.03711 1.01065 1.87877 1.21524 1.27100 1.94451 1.22995 0.94083 0.85691 0.94610 0.87155 1.23996 0.96142 1.02353 0.98534 1.22627 0.82361 0.96161 0.97253 0.90483 1.45769 1.19262 1.24379 1.45773 1.18860 0.83874 0.84427 0.78043 1.90665 1.79556 1.24469 1.52827 1.19805 0.94718 0.97629 1.02119 1.20834 1.00076 0.95332 1.05343 1.20936 0.93437 0.99514 0.97317 1.21424 1.01504 0.96214 1.04537 1.17955 0.92404 0.91334 0.91836 1.19892 0.96331 1.23393 1.12978 0.89722 1.26877 0.98065 0.96915 0.96819 1.69906 1.19612 1.30212 1.25415 0.85148 0.78795 0.77611 0.78112 1.17312 1.19686 1.18805 1.21431 0.95581 0.99902 0.98351 1.22531 0.93954 0.98410 0.93261 1.21588 1.01049 0.98013 0.98225 1.21670 1.02456 0.92338 1.02723 0.92081 0.93502 0.88969 0.87203 0.92400 0.74723 0.84569 0.84101 0.87243 0.90394 0.88635 0.93640 0.90387 0.92766 0.90639 0.89363 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.85 113.37 1.23 1.58 16 2 O -0.39 -8.65 9.17 -148.98 -1.37 -10.02 16 3 C 0.08 1.63 3.79 31.12 0.12 1.75 16 4 H 0.11 1.43 7.83 -2.39 -0.02 1.41 16 5 C -0.17 -4.21 7.36 31.13 0.23 -3.98 16 6 C 0.12 3.62 3.63 45.52 0.17 3.79 16 7 H 0.08 2.94 7.42 -2.39 -0.02 2.92 16 8 N -0.70 -23.19 5.17 -442.86 -2.29 -25.48 16 9 C 0.56 25.72 7.77 86.80 0.67 26.39 16 10 O -0.59 -32.79 15.93 -3.85 -0.06 -32.85 16 11 C -0.14 -6.77 5.87 -20.13 -0.12 -6.89 16 12 C -0.20 -7.72 9.55 22.70 0.22 -7.50 16 13 C -0.09 -3.71 10.01 22.18 0.22 -3.49 16 14 C -0.22 -10.19 9.78 22.77 0.22 -9.97 16 15 C 0.07 3.70 5.57 -21.32 -0.12 3.58 16 16 C -0.50 -27.49 9.05 23.47 0.21 -27.28 16 17 H 0.08 4.41 7.91 -2.91 -0.02 4.39 16 18 C 0.03 1.49 5.14 85.25 0.44 1.93 16 19 N -0.83 -47.23 10.97 21.82 0.24 -46.99 16 20 Si 0.98 40.51 29.59 68.60 2.03 42.54 16 21 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 24 C -0.13 -7.53 8.24 23.01 0.19 -7.34 16 25 C -0.08 -1.65 1.35 -51.65 -0.07 -1.72 16 26 C -0.13 -2.76 9.04 71.99 0.65 -2.11 16 27 C -0.13 -1.93 8.05 71.98 0.58 -1.35 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.11 2.28 7.66 -2.39 -0.02 2.26 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.41 10.89 4.68 -92.71 -0.43 10.45 16 34 H 0.14 3.99 6.38 -2.91 -0.02 3.97 16 35 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.29 15.06 8.30 -92.70 -0.77 14.29 16 38 H 0.10 6.11 5.75 -2.91 -0.02 6.09 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.05 1.30 6.96 -2.39 -0.02 1.29 16 42 H 0.07 0.91 7.35 -2.39 -0.02 0.89 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 1.01 7.10 -2.39 -0.02 0.99 16 Total: -1.00 -73.45 357.64 3.96 -69.48 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: 0.57 Total: 35.93 kcal Atomic # 6 Polarization: -37.45 SS G_CDS: 4.84 Total: -32.60 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -2.05 Total: -72.48 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -1.43 Total: -42.87 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -73.45 3.96 -69.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439848126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.988 kcal (2) G-P(sol) polarization free energy of solvation -73.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds