Wall clock time and date at job start Tue Mar 31 2020 09:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47024 * 2 1 4 4 C 1.50701 * 109.54334 * 60.36909 * 3 2 1 5 5 O 1.21281 * 120.00165 * 245.29677 * 4 3 2 6 6 N 1.34782 * 120.00135 * 65.29310 * 4 3 2 7 7 C 1.39934 * 120.00423 * 184.77451 * 6 4 3 8 8 C 1.39293 * 119.94723 * 35.42057 * 7 6 4 9 9 C 1.38476 * 120.43230 * 180.02562 * 8 7 6 10 10 C 1.37685 * 120.32071 * 359.95131 * 9 8 7 11 11 C 1.40744 * 119.88723 * 0.02662 * 10 9 8 12 12 C 1.41399 * 120.21587 * 180.27162 * 11 10 9 13 13 H 1.07994 * 120.00533 * 150.43462 * 12 11 10 14 14 C 1.39937 * 119.99799 * 330.44002 * 12 11 10 15 15 N 1.30833 * 120.00024 * 160.06411 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 340.05609 * 14 12 11 17 17 H 1.48500 * 109.46741 * 88.64839 * 16 14 12 18 18 H 1.48498 * 109.47291 * 208.64138 * 16 14 12 19 19 H 1.48492 * 109.47342 * 328.64643 * 16 14 12 20 20 C 1.38243 * 119.94935 * 215.40434 * 7 6 4 21 21 C 1.53181 * 109.54419 * 180.54681 * 3 2 1 22 22 C 1.53278 * 109.06341 * 176.85496 * 21 3 2 23 23 O 1.42904 * 109.46313 * 302.44654 * 22 21 3 24 24 C 1.42900 * 114.09602 * 61.15466 * 23 22 21 25 25 C 1.53088 * 109.41812 * 298.84310 * 24 23 22 26 26 H 1.08998 * 109.46649 * 185.66810 * 1 2 3 27 27 H 1.09003 * 109.47011 * 305.66347 * 1 2 3 28 28 H 1.08999 * 109.47491 * 65.66624 * 1 2 3 29 29 H 1.09002 * 109.47428 * 240.00510 * 2 1 3 30 30 H 1.09002 * 109.47522 * 120.00136 * 2 1 3 31 31 H 0.97000 * 119.99481 * 4.77420 * 6 4 3 32 32 H 1.08009 * 119.78192 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.84358 * 180.02562 * 9 8 7 34 34 H 1.07998 * 120.06189 * 180.02562 * 10 9 8 35 35 H 0.97000 * 119.99953 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.15923 * 0.02562 * 20 7 6 37 37 H 1.08999 * 109.52216 * 296.83933 * 21 3 2 38 38 H 1.08993 * 109.52016 * 57.03079 * 21 3 2 39 39 H 1.08996 * 109.46112 * 182.44631 * 22 21 3 40 40 H 1.09008 * 109.46757 * 62.44802 * 22 21 3 41 41 H 1.09001 * 109.47841 * 178.86384 * 24 23 22 42 42 H 1.08995 * 109.49113 * 58.84011 * 24 23 22 43 43 H 1.09002 * 109.52576 * 297.70536 * 25 24 23 44 44 H 1.09002 * 109.57464 * 177.54557 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5460 2.1519 1.2345 5 8 0.7716 3.0796 1.1318 6 7 1.9648 1.7553 2.4527 7 6 1.4309 2.3467 3.6030 8 6 0.0920 2.7300 3.6304 9 6 -0.4466 3.3167 4.7632 10 6 0.3361 3.5267 5.8763 11 6 1.6905 3.1442 5.8635 12 6 2.4992 3.3514 7.0047 13 1 3.3266 2.6878 7.2080 14 6 2.2274 4.4164 7.8709 15 7 2.6897 4.3987 9.0947 16 14 1.2047 5.8635 7.2796 17 1 -0.2335 5.5856 7.5235 18 1 1.6047 7.0874 8.0193 19 1 1.4299 6.0677 5.8261 20 6 2.2329 2.5494 4.7106 21 6 3.5717 1.4445 -0.0138 22 6 4.0698 2.8920 -0.0931 23 8 3.5307 3.5177 -1.2593 24 6 2.1034 3.5853 -1.2782 25 6 1.5264 2.1677 -1.2477 26 1 -0.3632 -1.0227 0.1015 27 1 -0.3633 0.5992 0.8350 28 1 -0.3634 0.4234 -0.9363 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.6363 1.0598 2.5319 32 1 -0.5301 2.5686 2.7623 33 1 -1.4861 3.6098 4.7742 34 1 -0.0884 3.9842 6.7577 35 1 2.5010 5.1367 9.6951 36 1 3.2711 2.2528 4.6903 37 1 3.9448 0.9783 0.8981 38 1 3.9288 0.8887 -0.8807 39 1 5.1584 2.8990 -0.1471 40 1 3.7464 3.4366 0.7940 41 1 1.7755 4.0917 -2.1861 42 1 1.7540 4.1389 -0.4069 43 1 1.8423 1.6264 -2.1395 44 1 0.4379 2.2170 -1.2181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456747960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:04 Heat of formation + Delta-G solvation = -76.013799 kcal Electronic energy + Delta-G solvation = -25668.890564 eV Core-core repulsion = 22164.212257 eV Total energy + Delta-G solvation = -3504.678307 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.11561 -38.65026 -37.31412 -35.52400 -34.58460 -33.24660 -31.45308 -30.71579 -30.31075 -28.77968 -25.79072 -25.14088 -23.81505 -23.11559 -21.82412 -21.12208 -20.76462 -18.95902 -17.83770 -16.78021 -16.19722 -15.98888 -15.94541 -15.48308 -15.29875 -14.69918 -14.54584 -14.40498 -14.02161 -13.77463 -13.39233 -13.15545 -12.74124 -12.61889 -12.46203 -12.29766 -12.17149 -11.97024 -11.60756 -11.55749 -11.41481 -11.26646 -11.10588 -10.97567 -10.56600 -10.53566 -10.41345 -10.01542 -9.76070 -9.62295 -9.48748 -9.11116 -9.03138 -7.70225 -7.19968 -6.96589 -4.51010 2.30555 2.61179 3.02855 3.14249 3.22075 3.34520 3.41470 3.84987 3.98919 4.31015 4.42991 4.49545 4.58970 4.85879 4.93388 5.06364 5.13520 5.25749 5.27680 5.38537 5.45806 5.47615 5.63747 5.67837 5.71286 5.76577 5.83807 5.93794 5.96147 6.01013 6.08963 6.15088 6.33075 6.43662 6.53634 6.71357 6.79010 7.10977 7.15930 7.32926 7.45705 7.65738 7.84550 7.88008 8.10535 8.32830 8.50360 8.63468 8.79760 10.05559 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021087 B = 0.004080 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.540768 B = 6861.115679 C = 7159.113647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 C -0.080 4.080 4 C 0.520 3.480 5 O -0.518 6.518 6 N -0.667 5.667 7 C 0.167 3.833 8 C -0.231 4.231 9 C -0.067 4.067 10 C -0.248 4.248 11 C 0.107 3.893 12 C -0.451 4.451 13 H 0.090 0.910 14 C 0.087 3.913 15 N -0.808 5.808 16 Si 0.912 3.088 17 H -0.266 1.266 18 H -0.291 1.291 19 H -0.249 1.249 20 C -0.231 4.231 21 C -0.145 4.145 22 C 0.056 3.944 23 O -0.384 6.384 24 C 0.049 3.951 25 C -0.127 4.127 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.400 0.600 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.285 0.715 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 -6.794 -16.929 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.146 4.146 3 C -0.083 4.083 4 C 0.307 3.693 5 O -0.393 6.393 6 N -0.311 5.311 7 C 0.075 3.925 8 C -0.252 4.252 9 C -0.086 4.086 10 C -0.268 4.268 11 C 0.103 3.897 12 C -0.480 4.480 13 H 0.108 0.892 14 C -0.132 4.132 15 N -0.432 5.432 16 Si 0.738 3.262 17 H -0.192 1.192 18 H -0.219 1.219 19 H -0.172 1.172 20 C -0.252 4.252 21 C -0.183 4.183 22 C -0.021 4.021 23 O -0.303 6.303 24 C -0.028 4.028 25 C -0.165 4.165 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.235 0.765 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.331 -5.985 -16.914 17.944 hybrid contribution -0.216 0.110 0.301 0.386 sum -0.547 -5.875 -16.613 17.629 Atomic orbital electron populations 1.21855 0.95093 1.01961 1.02583 1.21551 0.96806 0.93364 1.02849 1.20990 0.96398 0.96837 0.94123 1.20383 0.81230 0.83484 0.84203 1.90682 1.34410 1.27965 1.86263 1.43549 1.42733 1.39890 1.04927 1.17511 0.92376 0.97304 0.85268 1.20272 0.93618 1.12249 0.99069 1.20497 0.97778 0.97289 0.93016 1.21215 0.94749 1.11988 0.98843 1.17474 0.91352 0.89505 0.91369 1.19404 1.13482 1.11805 1.03278 0.89217 1.26115 0.93835 0.99966 0.93260 1.69707 1.37463 1.31321 1.04665 0.86375 0.79801 0.78873 0.81131 1.19248 1.21880 1.17196 1.20739 0.97671 1.13148 0.93670 1.22333 0.93376 0.98908 1.03666 1.22625 0.98965 0.91595 0.88903 1.87884 1.20856 1.79775 1.41784 1.22807 0.80349 0.96169 1.03436 1.22048 1.02068 0.96708 0.95713 0.92376 0.92213 0.92232 0.90751 0.91301 0.76525 0.87780 0.88558 0.87770 0.90437 0.87994 0.90382 0.89805 0.88533 0.92859 0.89117 0.90820 0.90712 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.25 37.16 0.34 -1.28 16 2 C -0.11 -1.01 4.96 -26.73 -0.13 -1.15 16 3 C -0.08 -0.91 0.43 -155.47 -0.07 -0.98 16 4 C 0.52 8.09 3.46 -10.98 -0.04 8.05 16 5 O -0.52 -9.92 11.85 5.56 0.07 -9.85 16 6 N -0.67 -10.79 5.19 -9.91 -0.05 -10.84 16 7 C 0.17 3.49 6.23 -83.76 -0.52 2.97 16 8 C -0.23 -5.07 8.66 -39.10 -0.34 -5.41 16 9 C -0.07 -1.51 10.02 -39.70 -0.40 -1.90 16 10 C -0.25 -6.07 7.37 -38.84 -0.29 -6.35 16 11 C 0.11 2.69 5.09 -106.85 -0.54 2.15 16 12 C -0.45 -12.09 9.56 -37.74 -0.36 -12.45 16 13 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 14 C 0.09 2.29 5.38 -17.34 -0.09 2.19 16 15 N -0.81 -21.41 13.93 55.55 0.77 -20.64 16 16 Si 0.91 21.16 24.73 -169.99 -4.20 16.95 16 17 H -0.27 -6.00 6.35 56.52 0.36 -5.64 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.25 -6.03 7.11 56.52 0.40 -5.62 16 20 C -0.23 -5.23 9.71 -38.68 -0.38 -5.61 16 21 C -0.14 -1.44 4.83 -26.49 -0.13 -1.56 16 22 C 0.06 0.67 6.62 37.30 0.25 0.92 16 23 O -0.38 -5.20 10.77 -35.23 -0.38 -5.58 16 24 C 0.05 0.63 6.56 37.20 0.24 0.87 16 25 C -0.13 -1.43 4.11 -26.59 -0.11 -1.54 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.78 7.04 -51.93 -0.37 0.42 16 28 H 0.06 0.57 6.82 -51.93 -0.35 0.22 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.62 8.11 -51.93 -0.42 0.19 16 31 H 0.40 5.21 7.75 -40.82 -0.32 4.89 16 32 H 0.10 2.23 6.54 -52.48 -0.34 1.89 16 33 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 34 H 0.10 2.54 4.61 -52.49 -0.24 2.30 16 35 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 36 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.08 0.67 7.13 -51.93 -0.37 0.30 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.76 7.38 -51.92 -0.38 0.38 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 1.16 6.01 -51.93 -0.31 0.85 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.99 6.56 -51.93 -0.34 0.65 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -29.78 338.52 -7.68 -37.47 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.43 Total: 8.48 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -2.56 Total: -21.08 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.72 Total: -31.48 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.31 Total: -15.43 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.20 Total: 16.95 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.78 -7.68 -37.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456747960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.546 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds