Wall clock time and date at job start Tue Mar 31 2020 09:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47024 * 2 1 4 4 C 1.50701 * 109.54334 * 60.36909 * 3 2 1 5 5 O 1.21281 * 120.00165 * 245.29677 * 4 3 2 6 6 N 1.34782 * 120.00135 * 65.29310 * 4 3 2 7 7 C 1.39934 * 120.00423 * 184.77451 * 6 4 3 8 8 C 1.39293 * 119.94723 * 35.42057 * 7 6 4 9 9 C 1.38476 * 120.43230 * 180.02562 * 8 7 6 10 10 C 1.37685 * 120.32071 * 359.95131 * 9 8 7 11 11 C 1.40744 * 119.88723 * 0.02662 * 10 9 8 12 12 C 1.41399 * 120.21587 * 180.27162 * 11 10 9 13 13 H 1.07994 * 120.00533 * 150.43462 * 12 11 10 14 14 C 1.39937 * 119.99799 * 330.44002 * 12 11 10 15 15 N 1.30833 * 120.00024 * 160.06411 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 340.05609 * 14 12 11 17 17 H 1.48500 * 109.46741 * 88.64839 * 16 14 12 18 18 H 1.48498 * 109.47291 * 208.64138 * 16 14 12 19 19 H 1.48492 * 109.47342 * 328.64643 * 16 14 12 20 20 C 1.38243 * 119.94935 * 215.40434 * 7 6 4 21 21 C 1.53181 * 109.54419 * 180.54681 * 3 2 1 22 22 C 1.53278 * 109.06341 * 176.85496 * 21 3 2 23 23 O 1.42904 * 109.46313 * 302.44654 * 22 21 3 24 24 C 1.42900 * 114.09602 * 61.15466 * 23 22 21 25 25 C 1.53088 * 109.41812 * 298.84310 * 24 23 22 26 26 H 1.08998 * 109.46649 * 185.66810 * 1 2 3 27 27 H 1.09003 * 109.47011 * 305.66347 * 1 2 3 28 28 H 1.08999 * 109.47491 * 65.66624 * 1 2 3 29 29 H 1.09002 * 109.47428 * 240.00510 * 2 1 3 30 30 H 1.09002 * 109.47522 * 120.00136 * 2 1 3 31 31 H 0.97000 * 119.99481 * 4.77420 * 6 4 3 32 32 H 1.08009 * 119.78192 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.84358 * 180.02562 * 9 8 7 34 34 H 1.07998 * 120.06189 * 180.02562 * 10 9 8 35 35 H 0.97000 * 119.99953 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.15923 * 0.02562 * 20 7 6 37 37 H 1.08999 * 109.52216 * 296.83933 * 21 3 2 38 38 H 1.08993 * 109.52016 * 57.03079 * 21 3 2 39 39 H 1.08996 * 109.46112 * 182.44631 * 22 21 3 40 40 H 1.09008 * 109.46757 * 62.44802 * 22 21 3 41 41 H 1.09001 * 109.47841 * 178.86384 * 24 23 22 42 42 H 1.08995 * 109.49113 * 58.84011 * 24 23 22 43 43 H 1.09002 * 109.52576 * 297.70536 * 25 24 23 44 44 H 1.09002 * 109.57464 * 177.54557 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5460 2.1519 1.2345 5 8 0.7716 3.0796 1.1318 6 7 1.9648 1.7553 2.4527 7 6 1.4309 2.3467 3.6030 8 6 0.0920 2.7300 3.6304 9 6 -0.4466 3.3167 4.7632 10 6 0.3361 3.5267 5.8763 11 6 1.6905 3.1442 5.8635 12 6 2.4992 3.3514 7.0047 13 1 3.3266 2.6878 7.2080 14 6 2.2274 4.4164 7.8709 15 7 2.6897 4.3987 9.0947 16 14 1.2047 5.8635 7.2796 17 1 -0.2335 5.5856 7.5235 18 1 1.6047 7.0874 8.0193 19 1 1.4299 6.0677 5.8261 20 6 2.2329 2.5494 4.7106 21 6 3.5717 1.4445 -0.0138 22 6 4.0698 2.8920 -0.0931 23 8 3.5307 3.5177 -1.2593 24 6 2.1034 3.5853 -1.2782 25 6 1.5264 2.1677 -1.2477 26 1 -0.3632 -1.0227 0.1015 27 1 -0.3633 0.5992 0.8350 28 1 -0.3634 0.4234 -0.9363 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.6363 1.0598 2.5319 32 1 -0.5301 2.5686 2.7623 33 1 -1.4861 3.6098 4.7742 34 1 -0.0884 3.9842 6.7577 35 1 2.5010 5.1367 9.6951 36 1 3.2711 2.2528 4.6903 37 1 3.9448 0.9783 0.8981 38 1 3.9288 0.8887 -0.8807 39 1 5.1584 2.8990 -0.1471 40 1 3.7464 3.4366 0.7940 41 1 1.7755 4.0917 -2.1861 42 1 1.7540 4.1389 -0.4069 43 1 1.8423 1.6264 -2.1395 44 1 0.4379 2.2170 -1.2181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456747960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:03 Heat of formation + Delta-G solvation = -94.815650 kcal Electronic energy + Delta-G solvation = -25669.705874 eV Core-core repulsion = 22164.212257 eV Total energy + Delta-G solvation = -3505.493616 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.26578 -40.05657 -38.80318 -36.52406 -36.19254 -35.05251 -32.38764 -32.16575 -31.59924 -30.43364 -27.11799 -26.71749 -24.74804 -24.38098 -22.89149 -22.68767 -22.32229 -20.27504 -19.58818 -17.95951 -17.73880 -17.25495 -17.06467 -16.95415 -16.62236 -16.21244 -15.72684 -15.60109 -15.36485 -15.04493 -14.62299 -14.53012 -14.23320 -14.10191 -13.87121 -13.42789 -13.30681 -13.20969 -13.01500 -12.97491 -12.81873 -12.48847 -12.38966 -12.25257 -12.02418 -11.83961 -11.56683 -11.41985 -11.38059 -11.22671 -10.91084 -10.66245 -10.33222 -9.57988 -8.95947 -8.89037 -6.52908 0.62798 0.74986 1.24856 1.37310 1.44360 1.68808 2.09198 2.13587 2.58874 2.90907 3.42789 3.46608 3.49627 3.70387 3.94217 3.98788 4.24111 4.27900 4.31743 4.44159 4.46452 4.50599 4.54444 4.61206 4.63818 4.75799 4.83011 4.84172 4.90827 4.95119 4.99210 5.00050 5.03149 5.10888 5.15403 5.20918 5.32243 5.37342 5.58972 5.67750 5.80834 5.91992 6.18790 6.18867 6.33872 6.58334 6.68514 6.80988 7.22466 8.14450 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021087 B = 0.004080 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.540768 B = 6861.115679 C = 7159.113647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.104 4.104 3 C -0.072 4.072 4 C 0.519 3.481 5 O -0.556 6.556 6 N -0.661 5.661 7 C 0.177 3.823 8 C -0.229 4.229 9 C -0.071 4.071 10 C -0.265 4.265 11 C 0.089 3.911 12 C -0.483 4.483 13 H 0.064 0.936 14 C 0.057 3.943 15 N -0.842 5.842 16 Si 0.959 3.041 17 H -0.255 1.255 18 H -0.274 1.274 19 H -0.268 1.268 20 C -0.238 4.238 21 C -0.140 4.140 22 C 0.049 3.951 23 O -0.394 6.394 24 C 0.047 3.953 25 C -0.124 4.124 26 H 0.072 0.928 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.417 0.583 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.294 0.706 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.020 0.980 41 H 0.106 0.894 42 H 0.037 0.963 43 H 0.104 0.896 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.085 -8.236 -19.738 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.076 4.076 4 C 0.309 3.691 5 O -0.433 6.433 6 N -0.307 5.307 7 C 0.083 3.917 8 C -0.250 4.250 9 C -0.089 4.089 10 C -0.284 4.284 11 C 0.086 3.914 12 C -0.512 4.512 13 H 0.082 0.918 14 C -0.159 4.159 15 N -0.468 5.468 16 Si 0.783 3.217 17 H -0.180 1.180 18 H -0.201 1.201 19 H -0.192 1.192 20 C -0.260 4.260 21 C -0.178 4.178 22 C -0.027 4.027 23 O -0.313 6.313 24 C -0.030 4.030 25 C -0.161 4.161 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.255 0.745 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.038 0.962 41 H 0.124 0.876 42 H 0.055 0.945 43 H 0.122 0.878 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.434 -7.457 -19.729 21.096 hybrid contribution -0.205 0.495 0.980 1.116 sum -0.639 -6.962 -18.749 20.010 Atomic orbital electron populations 1.21860 0.96016 1.02220 1.01449 1.21613 0.95909 0.91781 1.04873 1.21048 0.97540 0.97590 0.91384 1.21283 0.80104 0.82841 0.84905 1.90669 1.36131 1.29716 1.86792 1.43524 1.43101 1.40078 1.03958 1.17529 0.91928 0.95976 0.86236 1.20533 0.94197 1.11308 0.98979 1.20811 0.99026 0.96656 0.92434 1.21279 0.94693 1.12906 0.99568 1.17651 0.91787 0.90227 0.91734 1.19411 1.13920 1.12786 1.05086 0.91799 1.26652 0.94680 1.01356 0.93199 1.69718 1.39125 1.32539 1.05400 0.85651 0.79378 0.77161 0.79498 1.17988 1.20054 1.19207 1.20897 0.98537 1.12869 0.93665 1.22380 0.91831 0.97643 1.05899 1.22772 1.00210 0.92574 0.87191 1.87871 1.20994 1.80302 1.42174 1.22802 0.80332 0.97290 1.02553 1.22056 1.01576 0.95782 0.96732 0.90925 0.95634 0.91606 0.87484 0.90508 0.74501 0.87132 0.85898 0.88057 0.89496 0.86866 0.88781 0.86832 0.86465 0.96162 0.87582 0.94482 0.87763 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.25 71.98 0.67 -2.15 16 2 C -0.10 -1.52 4.96 30.59 0.15 -1.37 16 3 C -0.07 -1.42 0.43 -52.81 -0.02 -1.45 16 4 C 0.52 15.45 3.46 87.66 0.30 15.75 16 5 O -0.56 -21.15 11.85 -3.03 -0.04 -21.18 16 6 N -0.66 -20.44 5.19 -303.65 -1.58 -22.01 16 7 C 0.18 7.26 6.23 38.10 0.24 7.50 16 8 C -0.23 -9.87 8.66 22.58 0.20 -9.67 16 9 C -0.07 -3.12 10.02 22.20 0.22 -2.90 16 10 C -0.26 -12.97 7.37 22.75 0.17 -12.81 16 11 C 0.09 4.59 5.09 -21.31 -0.11 4.48 16 12 C -0.48 -26.90 9.56 23.46 0.22 -26.67 16 13 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 14 C 0.06 3.05 5.38 85.25 0.46 3.51 16 15 N -0.84 -45.84 13.93 21.83 0.30 -45.54 16 16 Si 0.96 44.04 24.73 68.60 1.70 45.73 16 17 H -0.25 -11.09 6.35 99.48 0.63 -10.46 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 20 C -0.24 -10.86 9.71 22.85 0.22 -10.63 16 21 C -0.14 -2.24 4.83 30.75 0.15 -2.09 16 22 C 0.05 1.08 6.62 72.08 0.48 1.56 16 23 O -0.39 -9.97 10.77 -148.98 -1.60 -11.57 16 24 C 0.05 1.15 6.56 72.01 0.47 1.62 16 25 C -0.12 -2.44 4.11 30.68 0.13 -2.31 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.02 0.62 7.04 -2.39 -0.02 0.60 16 28 H 0.06 1.07 6.82 -2.39 -0.02 1.06 16 29 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.03 8.11 -2.39 -0.02 1.02 16 31 H 0.42 9.91 7.75 -92.71 -0.72 9.19 16 32 H 0.11 4.64 6.54 -2.91 -0.02 4.62 16 33 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.10 4.95 4.61 -2.91 -0.01 4.94 16 35 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 36 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 37 H 0.09 1.23 7.13 -2.39 -0.02 1.21 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.02 0.57 7.38 -2.38 -0.02 0.55 16 41 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.04 1.18 6.01 -2.39 -0.01 1.17 16 43 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.65 6.56 -2.39 -0.02 1.64 16 Total: -1.00 -67.14 338.52 2.95 -64.20 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.22 Total: 28.01 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 3.94 Total: -37.63 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -1.27 Total: -67.55 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -1.64 Total: -32.76 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.70 Total: 45.73 kcal Total: -67.14 2.95 -64.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456747960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.617 kcal (2) G-P(sol) polarization free energy of solvation -67.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds