Wall clock time and date at job start Tue Mar 31 2020 09:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 C 1.50699 * 109.47303 * 120.00537 * 2 1 3 5 5 C 1.38258 * 119.99491 * 299.99335 * 4 2 1 6 6 C 1.38221 * 119.99648 * 179.97438 * 5 4 2 7 7 C 1.38256 * 120.00289 * 0.02702 * 6 5 4 8 8 C 1.38210 * 119.99636 * 359.95535 * 7 6 5 9 9 C 1.50700 * 119.99942 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47363 * 89.99945 * 9 8 7 11 11 O 1.21286 * 119.99450 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00116 * 180.02562 * 10 9 8 13 13 C 1.47066 * 136.05397 * 179.97438 * 12 10 9 14 14 C 1.53503 * 87.98596 * 152.84244 * 13 12 10 15 15 O 1.42897 * 114.20466 * 272.48084 * 14 13 12 16 16 C 1.50701 * 114.20491 * 139.65156 * 14 13 12 17 17 H 1.07990 * 120.00399 * 0.02562 * 16 14 13 18 18 C 1.37879 * 119.99442 * 180.02562 * 16 14 13 19 19 N 1.31517 * 120.00173 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99605 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47391 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47076 * 119.99902 * 20 18 16 23 23 H 1.48503 * 109.46756 * 239.99303 * 20 18 16 24 24 C 1.47060 * 136.06000 * 359.94777 * 12 10 9 25 25 C 1.38211 * 120.00262 * 120.20702 * 4 2 1 26 26 H 1.09000 * 109.46781 * 299.99824 * 1 2 3 27 27 H 1.09001 * 109.47073 * 59.99496 * 1 2 3 28 28 H 1.08994 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47083 * 240.00207 * 2 1 3 30 30 H 1.09010 * 109.46755 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47524 * 300.00228 * 3 2 1 32 32 H 1.09000 * 109.47115 * 60.00381 * 3 2 1 33 33 H 1.07999 * 120.00110 * 0.02562 * 5 4 2 34 34 H 1.08004 * 119.99895 * 180.02562 * 6 5 4 35 35 H 1.07991 * 120.00107 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.47013 * 330.00243 * 9 8 7 37 37 H 1.08998 * 109.47212 * 210.00105 * 9 8 7 38 38 H 1.09000 * 113.46827 * 267.61848 * 13 12 10 39 39 H 1.09003 * 113.47151 * 38.06638 * 13 12 10 40 40 H 0.96701 * 113.99865 * 179.97438 * 15 14 13 41 41 H 0.97003 * 119.99434 * 180.02562 * 19 18 16 42 42 H 1.09007 * 113.46761 * 321.93701 * 24 12 10 43 43 H 1.09003 * 113.46830 * 92.37669 * 24 12 10 44 44 H 1.07994 * 119.99943 * 0.04755 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6984 -0.2381 2.4861 6 6 2.1587 -0.8901 3.6146 7 6 2.9535 -2.0142 3.4877 8 6 3.2870 -2.4866 2.2324 9 6 4.1528 -3.7122 2.0940 10 6 3.2810 -4.9406 2.0482 11 8 2.0753 -4.8315 2.1212 12 7 3.8412 -6.1604 1.9271 13 6 3.3547 -7.5461 1.8494 14 6 4.6214 -7.8890 1.0530 15 8 4.5003 -7.6858 -0.3562 16 6 5.2397 -9.2145 1.4161 17 1 4.7874 -9.8303 2.1792 18 6 6.3829 -9.6408 0.7740 19 7 6.9334 -8.8910 -0.1557 20 14 7.1489 -11.2841 1.2236 21 1 6.3434 -11.9305 2.2905 22 1 7.1785 -12.1608 0.0253 23 1 8.5343 -11.0672 1.7125 24 6 5.2079 -6.6915 1.8139 25 6 2.8305 -1.8317 1.1035 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.0772 0.6398 2.5852 34 1 1.8976 -0.5213 4.5956 35 1 3.3135 -2.5233 4.3695 36 1 4.8285 -3.7779 2.9469 37 1 4.7340 -3.6446 1.1744 38 1 3.3033 -8.0430 2.8182 39 1 2.4366 -7.6521 1.2715 40 1 5.3000 -7.9023 -0.8550 41 1 7.7375 -9.1912 -0.6077 42 1 5.8659 -6.0707 1.2057 43 1 5.6497 -6.9610 2.7733 44 1 3.0948 -2.1982 0.1226 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457749430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:57 Heat of formation + Delta-G solvation = -39.559187 kcal Electronic energy + Delta-G solvation = -24297.180147 eV Core-core repulsion = 20794.082631 eV Total energy + Delta-G solvation = -3503.097516 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.95573 -39.24351 -37.39991 -35.51350 -34.00220 -32.33311 -32.20927 -30.05976 -29.07509 -27.26894 -27.07756 -25.15496 -24.98643 -23.12053 -22.13119 -20.37539 -19.37079 -18.17518 -17.43285 -16.62532 -16.26251 -15.78599 -15.43063 -15.06320 -14.85994 -14.57494 -14.16582 -13.94285 -13.73473 -13.61143 -13.20465 -12.99303 -12.65281 -12.55853 -12.39006 -12.11617 -12.04853 -11.90823 -11.60594 -11.57945 -11.25902 -11.22641 -11.10127 -10.99164 -10.67598 -10.61930 -10.49431 -10.27376 -9.64430 -9.21541 -8.80982 -8.66720 -8.50114 -8.37133 -7.83448 -6.42609 -4.52738 1.44986 1.52075 3.11728 3.21216 3.22821 3.25616 3.53129 3.95388 4.16634 4.57118 4.69672 4.80502 4.90365 5.05283 5.08098 5.18216 5.19458 5.26646 5.45072 5.47553 5.55070 5.56905 5.59808 5.67854 5.71915 5.79119 5.89290 5.93106 6.02915 6.12642 6.16704 6.18912 6.20249 6.40444 6.50026 6.55506 6.63559 6.67211 6.69013 6.75725 7.09183 7.12608 7.60924 7.78832 8.50026 8.54766 8.79555 9.18813 9.47242 10.64039 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029054 B = 0.002814 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.492030 B = 9946.736733 C =10241.178345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.142 4.142 4 C -0.077 4.077 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.111 4.111 8 C -0.052 4.052 9 C -0.098 4.098 10 C 0.537 3.463 11 O -0.556 6.556 12 N -0.636 5.636 13 C 0.107 3.893 14 C 0.240 3.760 15 O -0.571 6.571 16 C -0.532 4.532 17 H 0.073 0.927 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.281 1.281 24 C 0.071 3.929 25 C -0.102 4.102 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.394 0.606 41 H 0.273 0.727 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 15.897 3.089 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.199 4.199 4 C -0.077 4.077 5 C -0.138 4.138 6 C -0.137 4.137 7 C -0.129 4.129 8 C -0.052 4.052 9 C -0.137 4.137 10 C 0.326 3.674 11 O -0.436 6.436 12 N -0.370 5.370 13 C -0.015 4.015 14 C 0.198 3.802 15 O -0.384 6.384 16 C -0.571 4.571 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.736 3.264 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.207 1.207 24 C -0.052 4.052 25 C -0.120 4.120 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.250 0.750 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.234 16.357 3.172 17.465 hybrid contribution 1.190 -1.042 0.158 1.590 sum -4.044 15.315 3.331 16.186 Atomic orbital electron populations 1.21847 0.94392 1.02266 1.01574 1.20119 0.95985 0.95858 0.95621 1.21848 1.01209 0.95205 1.01668 1.19755 0.97615 0.95737 0.94603 1.20860 1.00741 1.00206 0.92025 1.21018 0.98278 0.96074 0.98303 1.20945 0.98748 0.96523 0.96678 1.19329 0.97690 0.94746 0.93454 1.20597 0.97609 0.90596 1.04937 1.19849 0.88172 0.82800 0.76549 1.90661 1.14908 1.86073 1.51926 1.49732 1.12091 1.04821 1.70369 1.23307 1.00039 0.78698 0.99488 1.19549 0.89406 0.91034 0.80257 1.86048 1.44198 1.90040 1.18146 1.21478 1.09933 1.03723 1.21918 0.90887 1.25087 0.96083 0.97822 0.94128 1.69274 1.21760 1.37754 1.25104 0.86258 0.78903 0.82604 0.78641 1.19417 1.20610 1.20662 1.24221 0.83708 0.96495 1.00819 1.20904 0.97814 0.95143 0.98154 0.92587 0.92551 0.92307 0.90471 0.92554 0.92545 0.92574 0.86552 0.86350 0.86441 0.88449 0.88237 0.89804 0.91661 0.74996 0.91634 0.91758 0.90093 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.01 37.16 0.33 -1.06 16 2 C -0.06 -0.60 3.09 -91.77 -0.28 -0.88 16 3 C -0.14 -1.22 9.01 37.16 0.33 -0.89 16 4 C -0.08 -0.99 4.78 -104.62 -0.50 -1.49 16 5 C -0.12 -1.45 8.71 -39.58 -0.34 -1.79 16 6 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 7 C -0.11 -1.56 9.70 -39.59 -0.38 -1.94 16 8 C -0.05 -0.79 4.37 -104.62 -0.46 -1.25 16 9 C -0.10 -1.54 5.66 -29.03 -0.16 -1.71 16 10 C 0.54 10.94 8.07 -10.99 -0.09 10.85 16 11 O -0.56 -13.05 16.81 5.55 0.09 -12.96 16 12 N -0.64 -13.42 3.69 -185.20 -0.68 -14.11 16 13 C 0.11 2.35 8.03 -8.51 -0.07 2.28 16 14 C 0.24 5.69 1.58 -91.24 -0.14 5.55 16 15 O -0.57 -14.67 13.54 -35.23 -0.48 -15.15 16 16 C -0.53 -13.15 8.69 -34.44 -0.30 -13.45 16 17 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 18 C 0.07 1.74 5.40 -17.82 -0.10 1.65 16 19 N -0.90 -22.39 11.01 55.43 0.61 -21.78 16 20 Si 0.91 19.15 29.54 -169.99 -5.02 14.13 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 C 0.07 1.49 7.84 -8.50 -0.07 1.42 16 25 C -0.10 -1.50 9.33 -39.58 -0.37 -1.87 16 26 H 0.06 0.51 7.39 -51.93 -0.38 0.12 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.81 7.88 -51.92 -0.41 0.40 16 30 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.45 7.39 -51.93 -0.38 0.07 16 33 H 0.12 1.14 7.10 -52.49 -0.37 0.77 16 34 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.10 1.33 8.09 -51.93 -0.42 0.91 16 37 H 0.10 1.47 8.08 -51.93 -0.42 1.05 16 38 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 39 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.39 10.17 6.33 45.56 0.29 10.46 16 41 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 44 H 0.12 1.68 7.95 -52.49 -0.42 1.26 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -28.78 366.71 -9.23 -38.01 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -6.29 Total: 12.80 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -3.00 Total: -6.46 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.07 Total: -35.89 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.38 Total: -28.11 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.78 -9.23 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457749430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.548 kcal (2) G-P(sol) polarization free energy of solvation -28.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds