Wall clock time and date at job start Tue Mar 31 2020 09:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 C 1.50699 * 109.47303 * 120.00537 * 2 1 3 5 5 C 1.38258 * 119.99491 * 299.99335 * 4 2 1 6 6 C 1.38221 * 119.99648 * 179.97438 * 5 4 2 7 7 C 1.38256 * 120.00289 * 0.02702 * 6 5 4 8 8 C 1.38210 * 119.99636 * 359.95535 * 7 6 5 9 9 C 1.50700 * 119.99942 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47363 * 89.99945 * 9 8 7 11 11 O 1.21286 * 119.99450 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00116 * 180.02562 * 10 9 8 13 13 C 1.47066 * 136.05397 * 179.97438 * 12 10 9 14 14 C 1.53503 * 87.98596 * 152.84244 * 13 12 10 15 15 O 1.42897 * 114.20466 * 272.48084 * 14 13 12 16 16 C 1.50701 * 114.20491 * 139.65156 * 14 13 12 17 17 H 1.07990 * 120.00399 * 0.02562 * 16 14 13 18 18 C 1.37879 * 119.99442 * 180.02562 * 16 14 13 19 19 N 1.31517 * 120.00173 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99605 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47391 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47076 * 119.99902 * 20 18 16 23 23 H 1.48503 * 109.46756 * 239.99303 * 20 18 16 24 24 C 1.47060 * 136.06000 * 359.94777 * 12 10 9 25 25 C 1.38211 * 120.00262 * 120.20702 * 4 2 1 26 26 H 1.09000 * 109.46781 * 299.99824 * 1 2 3 27 27 H 1.09001 * 109.47073 * 59.99496 * 1 2 3 28 28 H 1.08994 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47083 * 240.00207 * 2 1 3 30 30 H 1.09010 * 109.46755 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47524 * 300.00228 * 3 2 1 32 32 H 1.09000 * 109.47115 * 60.00381 * 3 2 1 33 33 H 1.07999 * 120.00110 * 0.02562 * 5 4 2 34 34 H 1.08004 * 119.99895 * 180.02562 * 6 5 4 35 35 H 1.07991 * 120.00107 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.47013 * 330.00243 * 9 8 7 37 37 H 1.08998 * 109.47212 * 210.00105 * 9 8 7 38 38 H 1.09000 * 113.46827 * 267.61848 * 13 12 10 39 39 H 1.09003 * 113.47151 * 38.06638 * 13 12 10 40 40 H 0.96701 * 113.99865 * 179.97438 * 15 14 13 41 41 H 0.97003 * 119.99434 * 180.02562 * 19 18 16 42 42 H 1.09007 * 113.46761 * 321.93701 * 24 12 10 43 43 H 1.09003 * 113.46830 * 92.37669 * 24 12 10 44 44 H 1.07994 * 119.99943 * 0.04755 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6984 -0.2381 2.4861 6 6 2.1587 -0.8901 3.6146 7 6 2.9535 -2.0142 3.4877 8 6 3.2870 -2.4866 2.2324 9 6 4.1528 -3.7122 2.0940 10 6 3.2810 -4.9406 2.0482 11 8 2.0753 -4.8315 2.1212 12 7 3.8412 -6.1604 1.9271 13 6 3.3547 -7.5461 1.8494 14 6 4.6214 -7.8890 1.0530 15 8 4.5003 -7.6858 -0.3562 16 6 5.2397 -9.2145 1.4161 17 1 4.7874 -9.8303 2.1792 18 6 6.3829 -9.6408 0.7740 19 7 6.9334 -8.8910 -0.1557 20 14 7.1489 -11.2841 1.2236 21 1 6.3434 -11.9305 2.2905 22 1 7.1785 -12.1608 0.0253 23 1 8.5343 -11.0672 1.7125 24 6 5.2079 -6.6915 1.8139 25 6 2.8305 -1.8317 1.1035 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.0772 0.6398 2.5852 34 1 1.8976 -0.5213 4.5956 35 1 3.3135 -2.5233 4.3695 36 1 4.8285 -3.7779 2.9469 37 1 4.7340 -3.6446 1.1744 38 1 3.3033 -8.0430 2.8182 39 1 2.4366 -7.6521 1.2715 40 1 5.3000 -7.9023 -0.8550 41 1 7.7375 -9.1912 -0.6077 42 1 5.8659 -6.0707 1.2057 43 1 5.6497 -6.9610 2.7733 44 1 3.0948 -2.1982 0.1226 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457749430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:56 Heat of formation + Delta-G solvation = -55.766120 kcal Electronic energy + Delta-G solvation = -24297.882932 eV Core-core repulsion = 20794.082631 eV Total energy + Delta-G solvation = -3503.800302 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41989 -40.52487 -39.03985 -36.45367 -35.88139 -34.12991 -33.48089 -31.12991 -30.58702 -28.50018 -27.98026 -26.90163 -26.65350 -24.05556 -23.20647 -21.98651 -20.51738 -19.80534 -19.23641 -17.92779 -17.63815 -17.19201 -16.92926 -16.55088 -16.24320 -16.01974 -15.69933 -15.05907 -14.86822 -14.64690 -14.45546 -14.43475 -14.09128 -13.93250 -13.77938 -13.41906 -13.24306 -12.98056 -12.91791 -12.86025 -12.78767 -12.73558 -12.23794 -12.20208 -12.14442 -12.03111 -11.54421 -11.52067 -11.40255 -10.96484 -10.66025 -10.24478 -9.70439 -9.59433 -9.49235 -8.27887 -6.44724 0.40545 0.50176 1.45876 1.50748 1.60604 1.63010 1.98664 2.40738 2.84666 2.94789 3.58056 3.62318 3.73251 3.84902 3.95373 4.10743 4.16253 4.21573 4.31276 4.31998 4.46031 4.47734 4.51814 4.61096 4.62953 4.67947 4.79674 4.81126 4.89728 4.92721 4.96611 4.98757 5.09590 5.15690 5.23143 5.24658 5.31784 5.39347 5.57538 5.66508 5.72850 5.74040 5.90646 6.13190 6.61405 6.88184 7.14614 7.29433 7.48652 8.78461 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029054 B = 0.002814 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.492030 B = 9946.736733 C =10241.178345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.126 4.126 8 C -0.074 4.074 9 C -0.087 4.087 10 C 0.532 3.468 11 O -0.591 6.591 12 N -0.639 5.639 13 C 0.105 3.895 14 C 0.218 3.782 15 O -0.587 6.587 16 C -0.551 4.551 17 H 0.074 0.926 18 C 0.032 3.968 19 N -0.917 5.917 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.276 1.276 24 C 0.086 3.914 25 C -0.126 4.126 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.048 0.952 40 H 0.389 0.611 41 H 0.277 0.723 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 17.198 4.207 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.194 4.194 4 C -0.082 4.082 5 C -0.138 4.138 6 C -0.137 4.137 7 C -0.144 4.144 8 C -0.074 4.074 9 C -0.126 4.126 10 C 0.323 3.677 11 O -0.473 6.473 12 N -0.372 5.372 13 C -0.017 4.017 14 C 0.177 3.823 15 O -0.400 6.400 16 C -0.589 4.589 17 H 0.092 0.908 18 C -0.169 4.169 19 N -0.558 5.558 20 Si 0.796 3.204 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.201 1.201 24 C -0.037 4.037 25 C -0.144 4.144 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.245 0.755 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.007 17.669 4.295 18.861 hybrid contribution 1.051 -1.418 -0.222 1.779 sum -3.956 16.251 4.074 17.215 Atomic orbital electron populations 1.21834 0.93716 1.01337 1.02944 1.20181 0.96484 0.96833 0.94293 1.21810 1.00893 0.93831 1.02864 1.20070 0.96818 0.95161 0.96104 1.21210 1.00367 1.00762 0.91466 1.21395 0.97216 0.95289 0.99845 1.21183 0.99371 0.97411 0.96470 1.19412 0.98750 0.94926 0.94352 1.20580 0.97214 0.88582 1.06259 1.20686 0.88279 0.83477 0.75229 1.90632 1.16683 1.86555 1.53443 1.49800 1.11988 1.04856 1.70541 1.23323 0.98645 0.79844 0.99917 1.19831 0.90863 0.92104 0.79534 1.86034 1.44223 1.90211 1.19538 1.21678 1.10418 1.04398 1.22381 0.90786 1.25773 0.96402 1.00678 0.94015 1.69330 1.22015 1.38927 1.25512 0.85298 0.78135 0.78801 0.78129 1.19133 1.20861 1.20110 1.24025 0.83496 0.95096 1.01034 1.21049 0.99131 0.96402 0.97861 0.91591 0.90841 0.94343 0.91240 0.93037 0.91083 0.91643 0.83894 0.83560 0.85501 0.86109 0.87553 0.87952 0.93302 0.75463 0.91335 0.91641 0.88525 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.01 71.98 0.65 -1.89 16 2 C -0.06 -1.18 3.09 -11.54 -0.04 -1.21 16 3 C -0.14 -2.06 9.01 71.98 0.65 -1.41 16 4 C -0.08 -2.02 4.78 -19.87 -0.09 -2.12 16 5 C -0.12 -2.64 8.71 22.27 0.19 -2.45 16 6 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 7 C -0.13 -3.41 9.70 22.27 0.22 -3.19 16 8 C -0.07 -2.25 4.37 -19.87 -0.09 -2.34 16 9 C -0.09 -2.71 5.66 29.10 0.16 -2.55 16 10 C 0.53 21.74 8.07 87.66 0.71 22.45 16 11 O -0.59 -28.21 16.81 -3.05 -0.05 -28.26 16 12 N -0.64 -26.92 3.69 -858.71 -3.17 -30.09 16 13 C 0.11 4.67 8.03 83.18 0.67 5.34 16 14 C 0.22 10.42 1.58 -11.20 -0.02 10.40 16 15 O -0.59 -30.77 13.54 -148.98 -2.02 -32.79 16 16 C -0.55 -27.08 8.69 25.60 0.22 -26.86 16 17 H 0.07 3.53 7.81 -2.92 -0.02 3.51 16 18 C 0.03 1.53 5.40 84.65 0.46 1.99 16 19 N -0.92 -45.54 11.01 21.45 0.24 -45.30 16 20 Si 0.97 38.71 29.54 68.60 2.03 40.73 16 21 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 24 C 0.09 3.58 7.84 83.19 0.65 4.23 16 25 C -0.13 -3.74 9.33 22.27 0.21 -3.54 16 26 H 0.07 1.04 7.39 -2.39 -0.02 1.02 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 1.46 7.88 -2.38 -0.02 1.44 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.87 7.39 -2.39 -0.02 0.85 16 33 H 0.14 2.32 7.10 -2.91 -0.02 2.30 16 34 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 35 H 0.13 3.05 8.06 -2.92 -0.02 3.03 16 36 H 0.12 3.14 8.09 -2.38 -0.02 3.12 16 37 H 0.11 3.13 8.08 -2.39 -0.02 3.11 16 38 H 0.10 4.09 8.10 -2.39 -0.02 4.07 16 39 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.39 20.57 6.33 -74.06 -0.47 20.10 16 41 H 0.28 12.95 8.31 -92.71 -0.77 12.18 16 42 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 43 H 0.10 3.70 8.10 -2.39 -0.02 3.68 16 44 H 0.11 3.30 7.95 -2.91 -0.02 3.28 16 Total: -1.00 -61.44 366.71 2.32 -59.12 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: 0.52 Total: 42.21 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 4.77 Total: -5.63 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -2.93 Total: -75.39 kcal Atomic # 8 Polarization: -58.98 SS G_CDS: -2.07 Total: -61.05 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.73 kcal Total: -61.44 2.32 -59.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457749430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.358 kcal (2) G-P(sol) polarization free energy of solvation -61.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds