Wall clock time and date at job start Tue Mar 31 2020 10:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33407 * 119.99537 * 2 1 4 4 C 1.46346 * 119.99498 * 179.97438 * 3 2 1 5 5 C 1.35176 * 119.99818 * 180.02562 * 4 3 2 6 6 C 1.46266 * 120.00254 * 180.02562 * 5 4 3 7 7 O 1.21712 * 119.99668 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00097 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00036 * 359.71905 * 8 6 5 10 10 C 1.50703 * 109.47126 * 270.27831 * 9 8 6 11 11 H 1.08002 * 119.99820 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99889 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99905 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00302 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47082 * 89.99861 * 14 12 10 16 16 H 1.48492 * 109.47090 * 210.00394 * 14 12 10 17 17 H 1.48499 * 109.46812 * 330.00449 * 14 12 10 18 18 C 1.46506 * 119.99969 * 179.97438 * 8 6 5 19 19 C 1.50703 * 109.46877 * 269.72057 * 18 8 6 20 20 C 1.34517 * 125.78677 * 89.99846 * 19 18 8 21 21 C 1.41385 * 106.84010 * 180.02562 * 20 19 18 22 22 C 1.34516 * 106.83976 * 359.97438 * 21 20 19 23 23 O 1.34299 * 125.79053 * 269.69191 * 19 18 8 24 24 C 1.50693 * 120.00396 * 0.02562 * 3 2 1 25 25 C 1.53001 * 109.47685 * 94.99690 * 24 3 2 26 26 H 1.08995 * 109.47102 * 300.00097 * 1 2 3 27 27 H 1.09001 * 109.47051 * 60.00148 * 1 2 3 28 28 H 1.09000 * 109.46791 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.99881 * 180.02562 * 2 1 3 30 30 H 1.07995 * 120.00647 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.99806 * 0.02562 * 5 4 3 32 32 H 1.08994 * 109.47173 * 30.28203 * 9 8 6 33 33 H 1.09005 * 109.47077 * 150.28374 * 9 8 6 34 34 H 0.96998 * 119.99775 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.46803 * 29.71536 * 18 8 6 36 36 H 1.09000 * 109.47214 * 149.72329 * 18 8 6 37 37 H 1.07995 * 126.58110 * 0.03327 * 20 19 18 38 38 H 1.07993 * 126.58201 * 179.97438 * 21 20 19 39 39 H 1.07996 * 125.78970 * 180.02562 * 22 21 20 40 40 H 1.09007 * 109.47380 * 214.99776 * 24 3 2 41 41 H 1.09004 * 109.47386 * 334.99411 * 24 3 2 42 42 H 1.09000 * 109.46486 * 59.99633 * 25 24 3 43 43 H 1.08990 * 109.47551 * 179.97438 * 25 24 3 44 44 H 1.09002 * 109.46360 * 300.00318 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1740 1.1554 0.0000 4 6 3.6375 1.1554 0.0006 5 6 4.3133 2.3261 0.0011 6 6 5.7760 2.3262 0.0011 7 8 6.3845 1.2721 0.0011 8 7 6.4498 3.4934 0.0021 9 6 5.7172 4.7620 -0.0030 10 6 5.4661 5.1914 -1.4255 11 1 5.8174 4.5805 -2.2440 12 6 4.7888 6.3646 -1.6821 13 7 4.5700 6.7395 -2.9236 14 14 4.1817 7.4215 -0.2666 15 1 5.2336 8.4012 0.1062 16 1 2.9542 8.1468 -0.6814 17 1 3.8749 6.5565 0.9008 18 6 7.9148 3.4934 0.0027 19 6 8.4166 3.4994 1.4237 20 6 8.6785 2.4114 2.1701 21 6 9.1231 2.8757 3.4293 22 6 9.1068 4.2198 3.3769 23 8 8.6835 4.5919 2.1578 24 6 1.4205 2.4604 0.0006 25 6 1.2748 2.9647 1.4377 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.0470 -0.9353 -0.0004 30 1 4.1775 0.2202 0.0006 31 1 3.7732 3.2614 0.0015 32 1 4.7649 4.6337 0.5114 33 1 6.3063 5.5238 0.5078 34 1 4.0932 7.5647 -3.1042 35 1 8.2783 2.6012 -0.5072 36 1 8.2783 4.3813 -0.5147 37 1 8.5700 1.3809 1.8658 38 1 9.4190 2.2681 4.2716 39 1 9.3906 4.8865 4.1777 40 1 1.9677 3.1962 -0.5889 41 1 0.4321 2.3095 -0.4335 42 1 2.2632 3.1156 1.8717 43 1 0.7302 3.9088 1.4381 44 1 0.7277 2.2289 2.0271 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492138929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:02 Heat of formation + Delta-G solvation = 4.122571 kcal Electronic energy + Delta-G solvation = -24814.050668 eV Core-core repulsion = 21312.847335 eV Total energy + Delta-G solvation = -3501.203333 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26078 -39.25405 -37.26001 -35.27813 -32.94199 -32.53111 -32.15733 -31.13638 -30.46180 -27.88209 -27.31447 -25.49340 -23.25064 -22.79004 -21.71750 -21.37991 -20.14309 -18.19550 -17.72622 -17.28905 -16.92894 -16.69815 -15.98551 -15.25891 -15.10836 -14.75008 -14.12448 -14.11132 -13.76087 -13.45525 -13.22332 -13.03732 -12.66809 -12.57601 -12.50180 -12.41774 -12.34154 -12.15533 -11.97784 -11.75272 -11.54991 -11.32412 -11.02135 -10.75375 -10.66667 -10.47452 -10.26342 -10.09189 -9.69386 -9.64954 -9.32861 -8.73969 -8.25914 -8.08347 -7.79924 -6.23146 -4.24977 1.14257 1.94858 2.81364 2.86082 3.16736 3.24362 3.26243 3.28600 3.86339 4.05825 4.25118 4.85675 4.95859 5.00237 5.07637 5.24304 5.25752 5.27833 5.30004 5.48574 5.50247 5.62304 5.66727 5.73738 5.74955 5.81516 5.96740 6.01661 6.04093 6.14705 6.18019 6.23529 6.35145 6.36522 6.37228 6.48812 6.64516 6.69708 6.76285 6.82934 7.08684 7.22690 7.40791 7.43268 8.03852 8.36367 8.78318 8.86059 9.35681 10.89321 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009193 B = 0.005761 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.150805 B = 4859.500670 C = 6801.207176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.149 4.149 3 C -0.097 4.097 4 C -0.057 4.057 5 C -0.177 4.177 6 C 0.552 3.448 7 O -0.569 6.569 8 N -0.581 5.581 9 C 0.207 3.793 10 C -0.540 4.540 11 H 0.080 0.920 12 C 0.079 3.921 13 N -0.889 5.889 14 Si 0.867 3.133 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.263 1.263 18 C 0.196 3.804 19 C -0.018 4.018 20 C -0.197 4.197 21 C -0.218 4.218 22 C -0.050 4.050 23 O -0.172 6.172 24 C -0.099 4.099 25 C -0.146 4.146 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.140 0.860 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.198 0.802 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 -7.778 10.371 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.167 4.167 3 C -0.097 4.097 4 C -0.077 4.077 5 C -0.198 4.198 6 C 0.344 3.656 7 O -0.451 6.451 8 N -0.310 5.310 9 C 0.086 3.914 10 C -0.579 4.579 11 H 0.098 0.902 12 C -0.125 4.125 13 N -0.526 5.526 14 Si 0.693 3.307 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.188 1.188 18 C 0.072 3.928 19 C -0.070 4.070 20 C -0.217 4.217 21 C -0.238 4.238 22 C -0.118 4.118 23 O -0.067 6.067 24 C -0.136 4.136 25 C -0.203 4.203 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.130 0.870 30 H 0.143 0.857 31 H 0.158 0.842 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.214 0.786 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.772 -7.818 10.131 12.919 hybrid contribution -0.227 0.660 0.823 1.079 sum -1.999 -7.158 10.954 13.237 Atomic orbital electron populations 1.20838 0.93050 1.01919 1.02035 1.23361 0.95948 0.97035 1.00374 1.20548 0.92625 0.95345 1.01156 1.22279 0.92285 0.98303 0.94828 1.23309 0.93528 0.99794 1.03134 1.18291 0.88376 0.83115 0.75851 1.90698 1.70665 1.31263 1.52521 1.47845 1.04883 1.07629 1.70662 1.19915 0.92103 0.80756 0.98595 1.21361 1.37680 1.07801 0.91026 0.90184 1.24839 0.95220 0.97041 0.95408 1.69889 1.40753 1.23496 1.18471 0.86988 0.79152 0.81423 0.83121 1.19813 1.20782 1.18778 1.19715 0.81218 1.05106 0.86713 1.23247 1.03521 0.83946 0.96272 1.21682 1.06057 0.99885 0.94036 1.21806 1.07882 0.94766 0.99314 1.23964 1.04706 0.96074 0.87031 1.84065 1.64879 1.35282 1.22497 1.20673 0.99962 0.94895 0.98036 1.21698 1.02161 1.00504 0.95923 0.91574 0.91375 0.92316 0.87033 0.85706 0.84226 0.94558 0.95026 0.92335 0.87329 0.88284 0.83396 0.83905 0.78569 0.89995 0.90987 0.92354 0.92452 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.85 36.01 0.32 -0.85 16 2 C -0.15 -1.78 9.98 -35.99 -0.36 -2.13 16 3 C -0.10 -1.37 5.23 -103.06 -0.54 -1.91 16 4 C -0.06 -0.95 9.38 -37.41 -0.35 -1.30 16 5 C -0.18 -3.37 8.48 -37.45 -0.32 -3.69 16 6 C 0.55 11.56 7.60 -13.04 -0.10 11.46 16 7 O -0.57 -12.47 15.81 5.18 0.08 -12.39 16 8 N -0.58 -12.14 2.44 -178.13 -0.43 -12.58 16 9 C 0.21 4.66 3.94 -5.19 -0.02 4.64 16 10 C -0.54 -14.14 9.94 -34.44 -0.34 -14.48 16 11 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 12 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.89 -25.58 13.96 55.43 0.77 -24.81 16 14 Si 0.87 19.77 27.47 -169.99 -4.67 15.10 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 18 C 0.20 3.65 5.94 -5.19 -0.03 3.62 16 19 C -0.02 -0.33 6.90 -35.62 -0.25 -0.57 16 20 C -0.20 -3.26 10.81 -39.70 -0.43 -3.69 16 21 C -0.22 -3.09 10.91 -39.70 -0.43 -3.52 16 22 C -0.05 -0.68 12.09 29.42 0.36 -0.33 16 23 O -0.17 -2.96 10.65 5.71 0.06 -2.90 16 24 C -0.10 -1.35 5.04 -27.89 -0.14 -1.49 16 25 C -0.15 -1.85 9.90 37.16 0.37 -1.49 16 26 H 0.07 0.60 7.83 -51.93 -0.41 0.20 16 27 H 0.07 0.64 7.42 -51.93 -0.39 0.26 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.11 1.23 8.05 -52.49 -0.42 0.81 16 30 H 0.13 2.05 7.52 -52.49 -0.39 1.66 16 31 H 0.14 2.71 4.46 -52.48 -0.23 2.48 16 32 H 0.04 0.80 5.16 -51.93 -0.27 0.53 16 33 H 0.03 0.71 7.50 -51.93 -0.39 0.32 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.11 1.94 7.41 -51.93 -0.38 1.55 16 36 H 0.10 1.79 8.07 -51.93 -0.42 1.38 16 37 H 0.15 2.44 8.06 -52.49 -0.42 2.02 16 38 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.08 1.30 6.70 -51.92 -0.35 0.95 16 41 H 0.07 0.86 6.33 -51.93 -0.33 0.53 16 42 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.58 7.88 -51.93 -0.41 0.17 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -30.39 370.76 -7.48 -37.86 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.51 Total: 7.83 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -2.36 Total: -13.71 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.34 Total: -37.38 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.14 Total: -15.29 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.67 Total: 15.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.39 -7.48 -37.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492138929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.987 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds