Wall clock time and date at job start Tue Mar 31 2020 09:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47265 * 2 1 4 4 C 1.35153 * 125.48392 * 90.01335 * 3 2 1 5 5 C 1.40319 * 107.20548 * 179.97438 * 4 3 2 6 6 C 1.37958 * 106.52849 * 0.02562 * 5 4 3 7 7 C 1.41603 * 126.10682 * 180.26246 * 6 5 4 8 8 C 1.35624 * 120.00041 * 218.42129 * 7 6 5 9 9 C 1.41546 * 120.00036 * 10.02224 * 8 7 6 10 10 O 1.21774 * 120.00259 * 6.46589 * 9 8 7 11 11 N 1.34779 * 119.99519 * 186.47570 * 9 8 7 12 12 C 1.46500 * 119.99722 * 179.97438 * 11 9 8 13 13 C 1.50708 * 109.47303 * 89.99759 * 12 11 9 14 14 H 1.08004 * 119.99368 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00322 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99973 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00180 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46974 * 59.99922 * 17 15 13 19 19 H 1.48499 * 109.47124 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47143 * 299.99740 * 17 15 13 21 21 C 1.46498 * 120.00242 * 359.97438 * 11 9 8 22 22 C 1.53001 * 109.46644 * 90.00708 * 21 11 9 23 23 C 1.53002 * 117.49437 * 243.74338 * 22 21 11 24 24 C 1.53008 * 117.49763 * 175.08607 * 22 21 11 25 25 O 1.34017 * 125.47740 * 269.97754 * 3 2 1 26 26 H 1.09000 * 109.47338 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47270 * 300.00190 * 1 2 3 28 28 H 1.09001 * 109.47346 * 60.00442 * 1 2 3 29 29 H 1.08998 * 109.47169 * 240.00021 * 2 1 3 30 30 H 1.09001 * 109.47346 * 119.99558 * 2 1 3 31 31 H 1.07990 * 126.39773 * 359.97438 * 4 3 2 32 32 H 1.07995 * 126.74130 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.99698 * 38.42059 * 7 6 5 34 34 H 1.08000 * 119.99731 * 190.01793 * 8 7 6 35 35 H 1.09001 * 109.47414 * 209.99546 * 12 11 9 36 36 H 1.08997 * 109.47253 * 329.99875 * 12 11 9 37 37 H 0.97000 * 120.00291 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.47137 * 209.99988 * 21 11 9 39 39 H 1.08994 * 109.47515 * 330.00192 * 21 11 9 40 40 H 1.09001 * 115.55400 * 29.41684 * 22 21 11 41 41 H 1.08999 * 117.50211 * 359.97438 * 23 22 21 42 42 H 1.09000 * 117.49725 * 145.02564 * 23 22 21 43 43 H 1.08996 * 117.50091 * 214.97744 * 24 22 21 44 44 H 1.09005 * 117.49794 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2941 2.1604 1.1005 5 6 2.7387 3.4164 0.6604 6 6 2.7242 3.3769 -0.7185 7 6 3.1020 4.4291 -1.5875 8 6 2.4049 4.6485 -2.7300 9 6 1.1812 3.9729 -2.9532 10 8 0.6951 3.2867 -2.0725 11 7 0.5543 4.0891 -4.1406 12 6 -0.7119 3.3895 -4.3719 13 6 -1.8588 4.2784 -3.9644 14 1 -1.6637 5.2656 -3.5720 15 6 -3.1567 3.8311 -4.0916 16 7 -3.3940 2.6284 -4.5680 17 14 -4.5781 4.9326 -3.5858 18 1 -4.5481 6.1801 -4.3907 19 1 -5.8615 4.2230 -3.8192 20 1 -4.4545 5.2699 -2.1449 21 6 1.1389 4.9150 -5.2000 22 6 2.0657 4.0564 -6.0630 23 6 3.5536 4.4130 -6.0722 24 6 2.6873 4.7104 -7.2987 25 8 2.2920 2.1540 -1.0914 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1820 1.8438 2.1269 32 1 3.0336 4.2507 1.2796 33 1 3.9453 5.0570 -1.3404 34 1 2.7835 5.3386 -3.4695 35 1 -0.8023 3.1418 -5.4295 36 1 -0.7343 2.4739 -3.7811 37 1 -4.3071 2.3138 -4.6578 38 1 0.3431 5.3270 -5.8205 39 1 1.7094 5.7291 -4.7530 40 1 1.8006 3.0014 -6.1316 41 1 3.8721 5.2595 -5.4638 42 1 4.2673 3.5926 -6.1473 43 1 2.8314 4.0856 -8.1801 44 1 2.4356 5.7523 -7.4971 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492635320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:44 Heat of formation + Delta-G solvation = 7.587333 kcal Electronic energy + Delta-G solvation = -25302.578983 eV Core-core repulsion = 21801.525893 eV Total energy + Delta-G solvation = -3501.053090 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.30442 -40.86370 -38.38584 -36.29974 -35.34190 -34.67111 -34.46398 -33.25764 -30.22518 -28.89850 -27.60220 -25.98559 -24.55752 -23.17211 -22.83307 -22.58237 -21.79769 -21.02074 -19.54158 -18.70647 -18.56391 -17.44185 -16.97644 -16.67259 -16.19011 -16.03195 -15.93096 -15.36435 -14.99876 -14.86036 -14.66895 -14.26968 -14.06171 -13.96266 -13.72175 -13.57647 -13.40478 -13.25993 -12.96768 -12.88171 -12.57138 -12.46215 -12.44319 -12.27292 -12.21206 -11.96557 -11.78002 -11.25391 -10.99151 -10.88452 -10.66572 -10.57744 -10.47229 -9.38144 -8.70307 -8.22872 -6.39002 -0.27680 1.24338 1.32335 1.37069 1.44411 1.82071 2.25916 2.33795 2.50884 2.66629 2.99722 3.04853 3.75481 3.83926 3.97067 3.97753 4.04426 4.14392 4.17287 4.25067 4.30921 4.33726 4.52069 4.60103 4.72353 4.81504 4.82932 4.84659 4.85899 4.88358 4.94445 5.00418 5.07410 5.14157 5.20370 5.22940 5.31270 5.33248 5.33451 5.48112 5.56200 5.78229 5.89363 6.05841 6.42757 6.68966 6.85604 7.27486 7.57626 8.83052 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009015 B = 0.006162 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3105.240136 B = 4543.246769 C = 6580.811822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.040 4.040 3 C -0.017 4.017 4 C -0.228 4.228 5 C -0.187 4.187 6 C -0.017 4.017 7 C 0.002 3.998 8 C -0.208 4.208 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.598 5.598 12 C 0.270 3.730 13 C -0.541 4.541 14 H 0.051 0.949 15 C 0.008 3.992 16 N -0.928 5.928 17 Si 0.966 3.034 18 H -0.258 1.258 19 H -0.276 1.276 20 H -0.279 1.279 21 C 0.143 3.857 22 C -0.195 4.195 23 C -0.160 4.160 24 C -0.161 4.161 25 O -0.162 6.162 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.016 0.984 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.169 0.831 32 H 0.176 0.824 33 H 0.205 0.795 34 H 0.170 0.830 35 H 0.014 0.986 36 H -0.009 1.009 37 H 0.267 0.733 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.530 3.378 4.328 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.069 4.069 4 C -0.247 4.247 5 C -0.206 4.206 6 C -0.066 4.066 7 C -0.017 4.017 8 C -0.228 4.228 9 C 0.308 3.692 10 O -0.458 6.458 11 N -0.328 5.328 12 C 0.149 3.851 13 C -0.579 4.579 14 H 0.069 0.931 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.790 3.210 18 H -0.183 1.183 19 H -0.201 1.201 20 H -0.205 1.205 21 C 0.020 3.980 22 C -0.215 4.215 23 C -0.197 4.197 24 C -0.198 4.198 25 O -0.056 6.056 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.092 0.908 30 H 0.145 0.855 31 H 0.186 0.814 32 H 0.194 0.806 33 H 0.222 0.778 34 H 0.187 0.813 35 H 0.032 0.968 36 H 0.009 0.991 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.135 0.865 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.068 2.804 4.379 17.843 hybrid contribution -1.509 0.042 0.000 1.510 sum 15.559 2.846 4.380 16.412 Atomic orbital electron populations 1.21700 0.94796 1.02647 1.00926 1.20208 0.95544 0.86972 1.04983 1.23230 1.02434 0.96533 0.84735 1.21680 1.08623 0.94692 0.99669 1.22489 1.05861 0.99446 0.92766 1.20280 1.04883 0.86876 0.94610 1.21235 0.98340 0.91874 0.90245 1.22536 0.94952 1.04690 1.00581 1.17892 0.86989 0.82089 0.82186 1.90812 1.69067 1.42199 1.43729 1.48097 1.22920 1.48334 1.13447 1.18558 0.80580 0.91507 0.94489 1.21659 0.91957 1.01372 1.42937 0.93083 1.25864 1.01657 0.96672 0.94916 1.70057 1.21459 1.18863 1.46433 0.85495 0.77797 0.79087 0.78601 1.18265 1.20099 1.20510 1.21235 0.96155 0.92291 0.88312 1.22641 0.96588 0.99345 1.02877 1.23160 0.91437 1.03801 1.01314 1.23038 1.02731 1.02290 0.91780 1.84227 1.63071 1.23090 1.35257 0.89459 0.92333 0.96486 0.90751 0.85515 0.81352 0.80615 0.77801 0.81281 0.96820 0.99101 0.92441 0.91170 0.87898 0.90987 0.86514 0.88651 0.88399 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 9.89 71.98 0.71 -3.89 16 2 C -0.04 -1.14 6.46 29.85 0.19 -0.95 16 3 C -0.02 -0.59 6.56 24.98 0.16 -0.43 16 4 C -0.23 -6.89 10.76 22.07 0.24 -6.65 16 5 C -0.19 -5.54 10.90 22.71 0.25 -5.29 16 6 C -0.02 -0.58 5.34 23.03 0.12 -0.46 16 7 C 0.00 0.07 9.94 22.49 0.22 0.29 16 8 C -0.21 -6.46 9.15 22.48 0.21 -6.25 16 9 C 0.52 23.23 7.23 85.06 0.61 23.85 16 10 O -0.58 -31.37 12.03 19.14 0.23 -31.14 16 11 N -0.60 -27.34 2.46 -836.83 -2.06 -29.40 16 12 C 0.27 15.56 5.16 85.64 0.44 16.00 16 13 C -0.54 -32.70 9.39 25.60 0.24 -32.46 16 14 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 15 C 0.01 0.46 5.46 84.65 0.46 0.93 16 16 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 17 Si 0.97 46.49 29.54 68.60 2.03 48.52 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 21 C 0.14 4.79 5.42 86.38 0.47 5.26 16 22 C -0.19 -5.67 6.01 -10.79 -0.06 -5.73 16 23 C -0.16 -3.24 10.07 30.62 0.31 -2.93 16 24 C -0.16 -3.37 10.26 30.62 0.31 -3.06 16 25 O -0.16 -6.68 7.81 17.49 0.14 -6.54 16 26 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 27 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.17 3.93 8.06 -2.92 -0.02 3.91 16 32 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16 33 H 0.21 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.17 3.75 5.46 -2.91 -0.02 3.73 16 35 H 0.01 0.81 8.07 -2.39 -0.02 0.80 16 36 H -0.01 -0.61 7.42 -2.39 -0.02 -0.63 16 37 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 39 H 0.10 2.67 5.74 -2.39 -0.01 2.66 16 40 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.12 1.80 7.57 -2.39 -0.02 1.78 16 42 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -83.54 370.33 6.49 -77.05 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.98 Total: 21.26 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 4.89 Total: -21.78 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -1.77 Total: -87.36 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: 0.37 Total: -37.69 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -83.54 6.49 -77.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492635320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.635 kcal (2) G-P(sol) polarization free energy of solvation -83.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds