Wall clock time and date at job start Tue Mar 31 2020 10:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46858 * 2 1 4 4 C 1.53002 * 109.46900 * 240.00102 * 2 1 3 5 5 C 1.50701 * 109.47325 * 59.99854 * 4 2 1 6 6 H 1.08007 * 119.99833 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00311 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99659 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00115 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47065 * 90.00598 * 9 7 5 11 11 H 1.48500 * 109.47239 * 210.00305 * 9 7 5 12 12 H 1.48500 * 109.47432 * 330.00393 * 9 7 5 13 13 C 1.53001 * 109.47213 * 120.00114 * 2 1 3 14 14 N 1.46499 * 109.46730 * 299.99988 * 13 2 1 15 15 C 1.34779 * 119.99569 * 180.02562 * 14 13 2 16 16 O 1.21699 * 120.00324 * 359.97438 * 15 14 13 17 17 C 1.46435 * 120.00140 * 180.27466 * 15 14 13 18 18 C 1.34796 * 119.99915 * 172.94054 * 17 15 14 19 19 C 1.47220 * 120.00398 * 349.03195 * 18 17 15 20 20 C 1.39864 * 120.14330 * 136.38105 * 19 18 17 21 21 C 1.37896 * 119.93899 * 179.97438 * 20 19 18 22 22 C 1.38329 * 120.23146 * 359.97438 * 21 20 19 23 23 C 1.38855 * 120.29125 * 0.02562 * 22 21 20 24 24 O 1.35905 * 119.97221 * 180.02562 * 23 22 21 25 25 C 1.38432 * 120.05340 * 359.73814 * 23 22 21 26 26 H 1.08998 * 109.46876 * 299.99858 * 1 2 3 27 27 H 1.09000 * 109.47228 * 59.99993 * 1 2 3 28 28 H 1.09005 * 109.46668 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47054 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47206 * 300.00020 * 3 2 1 31 31 H 1.08998 * 109.47262 * 60.00378 * 3 2 1 32 32 H 1.09003 * 109.47133 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47150 * 299.99736 * 4 2 1 34 34 H 0.97003 * 120.00019 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46785 * 179.97438 * 13 2 1 36 36 H 1.08998 * 109.47287 * 59.99988 * 13 2 1 37 37 H 0.96995 * 120.00635 * 359.97438 * 14 13 2 38 38 H 1.07997 * 119.99383 * 352.94405 * 17 15 14 39 39 H 1.08006 * 120.00046 * 169.03555 * 18 17 15 40 40 H 1.08003 * 120.03007 * 359.95170 * 20 19 18 41 41 H 1.08000 * 119.88284 * 180.02562 * 21 20 19 42 42 H 1.08004 * 119.85504 * 180.02562 * 22 21 20 43 43 H 0.96698 * 114.00452 * 90.00000 * 24 23 22 44 44 H 1.08003 * 120.11343 * 180.24881 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0109 -2.4798 6 1 0.9164 0.8671 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2478 0.3986 -5.2572 10 1 2.2252 1.4409 -5.6613 11 1 1.0835 -0.5806 -6.3614 12 1 -0.0608 1.0352 -4.9613 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8778 -0.4908 3.6695 16 8 2.5775 -1.4803 3.7811 17 6 1.3848 0.1959 4.8651 18 6 1.5899 -0.3419 6.0840 19 6 2.0886 -1.7217 6.2054 20 6 3.0940 -2.0265 7.1287 21 6 3.5576 -3.3205 7.2392 22 6 3.0313 -4.3196 6.4402 23 6 2.0328 -4.0277 5.5204 24 8 1.5200 -5.0143 4.7390 25 6 1.5552 -2.7337 5.4029 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1301 -0.7209 -1.2496 33 1 1.6767 -1.7489 -1.2493 34 1 2.8615 -1.8823 -4.7337 35 1 3.1301 -0.7216 1.2489 36 1 1.6768 -1.7489 1.2492 37 1 0.9944 0.7582 2.3564 38 1 0.8567 1.1332 4.7703 39 1 1.3885 0.2395 6.9717 40 1 3.5072 -1.2491 7.7542 41 1 4.3337 -3.5550 7.9527 42 1 3.3985 -5.3311 6.5322 43 1 0.7579 -5.4666 5.1261 44 1 0.7758 -2.5064 4.6906 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493314090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:40 Heat of formation + Delta-G solvation = -66.700071 kcal Electronic energy + Delta-G solvation = -24371.664151 eV Core-core repulsion = 20867.389718 eV Total energy + Delta-G solvation = -3504.274433 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.24266 -40.23109 -38.74383 -37.62696 -35.24605 -34.54497 -33.92389 -30.97843 -30.45843 -29.10751 -27.97438 -27.79687 -25.44267 -24.32017 -23.33425 -22.45704 -20.78367 -19.77248 -19.12737 -18.38479 -17.79251 -17.34504 -16.84585 -16.57495 -16.33797 -16.23532 -15.83087 -15.42226 -15.07945 -14.75937 -14.60695 -14.48944 -14.18425 -13.95473 -13.76286 -13.57400 -13.24466 -12.87423 -12.79854 -12.72755 -12.59774 -12.47814 -12.35435 -12.23676 -11.98920 -11.55612 -11.48143 -11.14694 -10.93555 -10.85832 -10.70017 -10.53075 -10.02628 -9.41493 -9.11877 -8.15114 -6.23682 -0.23063 0.45509 0.93221 1.41509 1.42426 1.52846 2.34430 2.39487 2.45949 2.82633 3.19120 3.32448 3.79538 3.92623 4.00747 4.06552 4.07257 4.21344 4.22383 4.36406 4.53067 4.65576 4.68352 4.70489 4.77200 4.91781 4.95250 5.04415 5.09487 5.10899 5.17175 5.28643 5.40046 5.47779 5.48028 5.52056 5.52453 5.55306 5.57956 5.65411 5.78471 5.88254 5.99138 6.28511 6.69340 6.88185 6.91754 7.37566 7.44394 8.97663 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023209 B = 0.002952 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.131915 B = 9484.283151 C =10200.488283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.065 4.065 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.961 3.039 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.258 1.258 13 C 0.146 3.854 14 N -0.705 5.705 15 C 0.519 3.481 16 O -0.573 6.573 17 C -0.209 4.209 18 C -0.020 4.020 19 C -0.070 4.070 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.151 4.151 23 C 0.067 3.933 24 O -0.518 6.518 25 C -0.082 4.082 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.073 0.927 32 H -0.018 1.018 33 H -0.018 1.018 34 H 0.260 0.740 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.413 0.587 38 H 0.174 0.826 39 H 0.184 0.816 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.135 0.865 43 H 0.403 0.597 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.290 4.301 26.110 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.786 3.214 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.182 1.182 13 C 0.022 3.978 14 N -0.357 5.357 15 C 0.309 3.691 16 O -0.455 6.455 17 C -0.229 4.229 18 C -0.039 4.039 19 C -0.070 4.070 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.169 4.169 23 C 0.023 3.977 24 O -0.330 6.330 25 C -0.101 4.101 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.001 0.999 33 H 0.000 1.000 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.251 0.749 38 H 0.192 0.808 39 H 0.201 0.799 40 H 0.172 0.828 41 H 0.170 0.830 42 H 0.152 0.848 43 H 0.260 0.740 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.298 3.672 25.640 26.256 hybrid contribution -0.426 -0.325 -1.511 1.604 sum -4.724 3.347 24.129 24.814 Atomic orbital electron populations 1.21682 0.93462 1.00792 1.01780 1.20710 0.96780 0.96372 0.92642 1.21685 0.99764 0.94474 1.01819 1.18967 0.94081 0.94079 0.92624 1.21594 1.30453 1.12115 0.90988 0.90739 1.25997 0.95658 0.95852 1.02880 1.70138 1.38856 1.25032 1.24119 0.85503 0.79243 0.78075 0.78575 1.20066 1.21587 1.18159 1.21090 0.97345 0.95047 0.84365 1.45960 1.52806 1.32076 1.04856 1.19333 0.80804 0.84009 0.84950 1.90914 1.40116 1.27459 1.86984 1.23202 1.05256 1.03690 0.90789 1.22787 0.90976 0.91675 0.98449 1.19117 0.97780 0.93643 0.96463 1.21577 0.96071 0.97443 0.97996 1.21216 1.00372 0.92521 0.99658 1.21675 0.97986 1.01318 0.95955 1.18601 0.97405 0.88136 0.93514 1.84862 1.51709 1.50098 1.46341 1.21355 1.00044 0.92678 0.95975 0.90914 0.92458 0.94792 0.94683 0.92440 0.90869 0.99920 0.99989 0.93171 0.94253 0.94442 0.74884 0.80832 0.79918 0.82803 0.82971 0.84753 0.73985 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 2 C -0.06 -2.51 0.54 -52.18 -0.03 -2.54 16 3 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 4 C 0.04 2.11 4.04 29.85 0.12 2.23 16 5 C -0.51 -28.01 7.65 25.60 0.20 -27.81 16 6 H 0.07 3.77 5.68 -2.91 -0.02 3.75 16 7 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 8 N -0.94 -58.43 13.29 21.45 0.28 -58.15 16 9 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 13 C 0.15 5.51 4.56 86.38 0.39 5.90 16 14 N -0.70 -19.77 4.95 -467.33 -2.32 -22.09 16 15 C 0.52 14.97 6.79 86.38 0.59 15.55 16 16 O -0.57 -21.84 12.15 -4.35 -0.05 -21.90 16 17 C -0.21 -3.73 9.91 23.62 0.23 -3.49 16 18 C -0.02 -0.31 9.81 23.84 0.23 -0.08 16 19 C -0.07 -1.59 4.53 -20.16 -0.09 -1.69 16 20 C -0.11 -2.17 9.79 22.58 0.22 -1.95 16 21 C -0.12 -2.36 10.02 22.21 0.22 -2.13 16 22 C -0.15 -3.61 9.98 22.44 0.22 -3.39 16 23 C 0.07 1.93 6.70 22.46 0.15 2.08 16 24 O -0.52 -14.64 13.50 -92.48 -1.25 -15.89 16 25 C -0.08 -2.33 6.54 22.68 0.15 -2.18 16 26 H 0.07 1.84 6.86 -2.39 -0.02 1.83 16 27 H 0.06 2.08 6.62 -2.39 -0.02 2.07 16 28 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 2.07 6.62 -2.39 -0.02 2.06 16 31 H 0.07 1.84 6.86 -2.39 -0.02 1.82 16 32 H -0.02 -1.04 8.14 -2.39 -0.02 -1.05 16 33 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.41 8.70 6.14 -92.71 -0.57 8.13 16 38 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 43 H 0.40 6.66 9.06 -74.06 -0.67 5.99 16 44 H 0.10 3.13 7.03 -2.91 -0.02 3.10 16 Total: -1.00 -79.51 359.49 2.70 -76.81 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -0.23 Total: 21.57 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 4.23 Total: -26.48 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -2.03 Total: -80.23 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.30 Total: -37.78 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -79.51 2.70 -76.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493314090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.111 kcal (2) G-P(sol) polarization free energy of solvation -79.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds