Wall clock time and date at job start Tue Mar 31 2020 08:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47026 * 2 1 4 4 C 1.38417 * 119.82254 * 269.72207 * 3 2 1 5 5 C 1.37879 * 120.17106 * 179.72152 * 4 3 2 6 6 C 1.39875 * 119.82198 * 0.57632 * 5 4 3 7 7 C 1.47150 * 120.16827 * 179.67920 * 6 5 4 8 8 C 1.34975 * 119.99914 * 225.27920 * 7 6 5 9 9 C 1.46232 * 120.00199 * 8.57742 * 8 7 6 10 10 O 1.21765 * 119.99722 * 6.57311 * 9 8 7 11 11 N 1.34773 * 120.00567 * 186.57390 * 9 8 7 12 12 C 1.36720 * 119.99856 * 354.21910 * 11 9 8 13 13 H 1.08005 * 119.99525 * 317.62745 * 12 11 9 14 14 C 1.39121 * 119.99996 * 137.61835 * 12 11 9 15 15 N 1.31323 * 120.00028 * 352.78661 * 14 12 11 16 16 Si 1.86804 * 119.99992 * 172.78761 * 14 12 11 17 17 H 1.48496 * 109.47080 * 90.00018 * 16 14 12 18 18 H 1.48500 * 109.47043 * 210.00290 * 16 14 12 19 19 H 1.48506 * 109.46593 * 329.99939 * 16 14 12 20 20 C 1.46492 * 120.00275 * 174.22404 * 11 9 8 21 21 C 1.53004 * 109.47373 * 89.99894 * 20 11 9 22 22 O 1.42897 * 109.47006 * 64.99881 * 21 20 11 23 23 C 1.42896 * 113.99773 * 180.02562 * 22 21 20 24 24 C 1.39874 * 119.65718 * 359.70125 * 6 5 4 25 25 C 1.37872 * 119.81883 * 0.02562 * 24 6 5 26 26 H 1.09007 * 109.47115 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47322 * 60.00238 * 1 2 3 28 28 H 1.08999 * 109.47241 * 300.00201 * 1 2 3 29 29 H 1.09001 * 109.47322 * 119.99762 * 2 1 3 30 30 H 1.08999 * 109.47241 * 239.99799 * 2 1 3 31 31 H 1.07999 * 119.91100 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.08800 * 180.29896 * 5 4 3 33 33 H 1.08001 * 120.00106 * 45.28448 * 7 6 5 34 34 H 1.07999 * 120.00433 * 188.57761 * 8 7 6 35 35 H 0.96996 * 119.99986 * 185.01879 * 15 14 12 36 36 H 1.09010 * 109.47095 * 209.99763 * 20 11 9 37 37 H 1.08997 * 109.47181 * 329.99748 * 20 11 9 38 38 H 1.08995 * 109.47165 * 184.99787 * 21 20 11 39 39 H 1.08994 * 109.46932 * 304.99880 * 21 20 11 40 40 H 1.09002 * 109.47475 * 179.97438 * 23 22 21 41 41 H 1.08999 * 109.47389 * 299.99678 * 23 22 21 42 42 H 1.09003 * 109.47539 * 60.00134 * 23 22 21 43 43 H 1.08000 * 120.08907 * 180.02562 * 24 6 5 44 44 H 1.08000 * 119.90956 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2672 2.0679 -1.2009 5 6 2.7214 3.3697 -1.2093 6 6 2.9561 4.0323 0.0000 7 6 3.4475 5.4193 -0.0001 8 6 4.4558 5.7781 0.8224 9 6 5.1844 4.7574 1.5744 10 8 4.9639 3.5774 1.3702 11 7 6.1001 5.1225 2.4934 12 6 6.4336 6.4403 2.6400 13 1 6.5778 7.0610 1.7680 14 6 6.5870 6.9816 3.9123 15 7 6.2749 6.2697 4.9708 16 14 7.2369 8.7212 4.1151 17 1 6.1005 9.6772 4.1160 18 1 7.9742 8.8276 5.3997 19 1 8.1525 9.0417 2.9907 20 6 6.7381 4.1075 3.3353 21 6 8.0066 3.5984 2.6477 22 8 8.9562 4.6619 2.5524 23 6 10.1835 4.2904 1.9217 24 6 2.7218 3.3696 1.2092 25 6 2.2623 2.0697 1.2008 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 2.0897 1.5533 -2.1336 32 1 2.8996 3.8749 -2.1471 33 1 3.0014 6.1503 -0.6583 34 1 4.7245 6.8191 0.9251 35 1 6.3124 6.6707 5.8532 36 1 6.9981 4.5458 4.2989 37 1 6.0492 3.2767 3.4879 38 1 8.4329 2.7818 3.2303 39 1 7.7596 3.2412 1.6480 40 1 10.8501 5.1522 1.8878 41 1 10.6552 3.4880 2.4889 42 1 9.9814 3.9479 0.9069 43 1 2.9003 3.8747 2.1470 44 1 2.0804 1.5567 2.1336 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493493445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:54 Heat of formation + Delta-G solvation = -28.957068 kcal Electronic energy + Delta-G solvation = -25000.797988 eV Core-core repulsion = 21498.160214 eV Total energy + Delta-G solvation = -3502.637774 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -39.27278 -38.28126 -36.92631 -35.04201 -34.02816 -31.97565 -31.55838 -30.30699 -29.42917 -27.95803 -25.81955 -24.79750 -23.98849 -22.53799 -22.08617 -20.89858 -19.88190 -18.72047 -16.91844 -16.38098 -15.53590 -15.35581 -15.32466 -14.97228 -14.65707 -14.40551 -14.26060 -13.91196 -13.58733 -13.36626 -13.16001 -12.86806 -12.68149 -12.61393 -12.27631 -11.90675 -11.58957 -11.46664 -11.36439 -11.15691 -11.03405 -11.01269 -10.91103 -10.62454 -10.44218 -10.38384 -10.30069 -10.03854 -9.20800 -8.99823 -8.93184 -8.56741 -8.16030 -7.39507 -7.20388 -6.29410 -4.05952 1.49766 2.12450 2.58213 3.16792 3.23908 3.27654 4.11535 4.43477 4.47428 4.57620 4.86247 5.05543 5.12091 5.13972 5.45054 5.46914 5.51929 5.60271 5.69491 5.74321 5.75991 5.86006 5.92098 5.97780 6.02211 6.04930 6.09855 6.18919 6.25930 6.32416 6.39107 6.40653 6.58741 6.67642 6.73845 6.87065 7.03123 7.16045 7.20154 7.31571 7.39239 7.55278 7.65728 7.86719 8.06095 8.41303 9.12325 9.53337 9.95814 10.69795 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.004043 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.308857 B = 6923.988931 C = 7521.300324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.086 4.086 4 C -0.140 4.140 5 C -0.111 4.111 6 C -0.045 4.045 7 C -0.098 4.098 8 C -0.142 4.142 9 C 0.481 3.519 10 O -0.592 6.592 11 N -0.414 5.414 12 C -0.316 4.316 13 H 0.085 0.915 14 C 0.049 3.951 15 N -0.870 5.870 16 Si 0.920 3.080 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.105 3.895 21 C 0.055 3.945 22 O -0.363 6.363 23 C 0.031 3.969 24 C -0.015 4.015 25 C -0.136 4.136 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.270 0.730 36 H 0.126 0.874 37 H 0.067 0.933 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.114 0.886 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.201 -5.318 -6.713 9.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.159 4.159 5 C -0.129 4.129 6 C -0.046 4.046 7 C -0.119 4.119 8 C -0.162 4.162 9 C 0.272 3.728 10 O -0.481 6.481 11 N -0.129 5.129 12 C -0.444 4.444 13 H 0.103 0.897 14 C -0.156 4.156 15 N -0.508 5.508 16 Si 0.747 3.253 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.019 4.019 21 C -0.023 4.023 22 O -0.281 6.281 23 C -0.066 4.066 24 C -0.033 4.033 25 C -0.154 4.154 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.081 0.919 36 H 0.143 0.857 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.132 0.868 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.210 -5.694 -6.454 9.581 hybrid contribution 0.812 0.739 0.082 1.101 sum -3.398 -4.955 -6.372 8.758 Atomic orbital electron populations 1.21738 0.95289 1.01019 1.02098 1.20482 0.95676 0.93562 1.02181 1.19736 1.00109 0.95455 0.93354 1.20608 1.03415 0.95142 0.96696 1.21043 1.00286 0.94864 0.96737 1.18823 0.98716 0.93952 0.93065 1.22105 0.97198 0.94261 0.98354 1.23284 0.96361 1.00360 0.96233 1.18474 0.81608 0.88408 0.84280 1.90715 1.68350 1.18648 1.70349 1.43283 1.32058 1.06743 1.30854 1.19315 1.46977 0.85273 0.92874 0.89702 1.25428 0.95603 0.99304 0.95248 1.69569 1.45935 1.36320 0.98945 0.86032 0.79009 0.82162 0.78102 1.20412 1.20830 1.19325 1.21687 0.90226 0.91914 0.98027 1.22996 0.90898 0.89075 0.99301 1.88149 1.24590 1.35650 1.79667 1.22633 0.87956 1.00042 0.96003 1.21048 0.91214 0.93961 0.97094 1.20700 1.02623 0.95320 0.96749 0.92972 0.92758 0.92620 0.91498 0.91687 0.87345 0.87061 0.86157 0.85172 0.91938 0.85687 0.91439 0.94565 0.94324 0.90499 0.95251 0.95108 0.86832 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.89 37.16 0.37 -1.17 16 2 C -0.08 -1.02 6.06 -27.89 -0.17 -1.19 16 3 C -0.09 -1.37 5.14 -104.49 -0.54 -1.91 16 4 C -0.14 -2.21 9.67 -39.65 -0.38 -2.59 16 5 C -0.11 -1.87 9.80 -39.10 -0.38 -2.25 16 6 C -0.05 -0.86 4.55 -105.06 -0.48 -1.34 16 7 C -0.10 -1.79 9.81 -37.12 -0.36 -2.15 16 8 C -0.14 -2.93 9.23 -37.53 -0.35 -3.28 16 9 C 0.48 11.53 6.66 -13.05 -0.09 11.44 16 10 O -0.59 -14.77 11.59 5.13 0.06 -14.71 16 11 N -0.41 -10.32 2.48 -116.46 -0.29 -10.61 16 12 C -0.32 -7.96 7.74 -15.04 -0.12 -8.07 16 13 H 0.09 2.08 7.10 -52.48 -0.37 1.71 16 14 C 0.05 1.23 5.24 -17.44 -0.09 1.14 16 15 N -0.87 -22.66 10.97 55.50 0.61 -22.05 16 16 Si 0.92 19.68 29.56 -169.99 -5.03 14.65 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 C 0.11 2.52 5.37 -4.04 -0.02 2.49 16 21 C 0.05 1.18 6.28 37.16 0.23 1.41 16 22 O -0.36 -7.93 10.17 -35.23 -0.36 -8.29 16 23 C 0.03 0.51 11.01 101.05 1.11 1.63 16 24 C -0.01 -0.29 6.53 -39.10 -0.26 -0.55 16 25 C -0.14 -2.40 9.68 -39.65 -0.38 -2.79 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 30 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 31 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.13 2.57 6.70 -52.49 -0.35 2.21 16 35 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.13 3.23 5.31 -51.92 -0.28 2.95 16 37 H 0.07 1.62 7.51 -51.93 -0.39 1.23 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.11 2.44 7.03 -52.49 -0.37 2.07 16 44 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -28.94 364.26 -8.23 -37.16 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.81 Total: 7.52 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.90 Total: -9.17 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.32 Total: -32.65 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.30 Total: -23.00 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.94 -8.23 -37.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493493445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.203 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds