Wall clock time and date at job start Tue Mar 31 2020 07:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35905 * 117.00109 * 2 1 4 4 C 1.38760 * 120.05270 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94343 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05487 * 359.74343 * 5 4 3 7 7 C 1.38252 * 120.11142 * 0.51015 * 6 5 4 8 8 C 1.50702 * 119.97102 * 179.76484 * 7 6 5 9 9 H 1.09003 * 110.30185 * 14.48245 * 8 7 6 10 10 C 1.54384 * 110.33844 * 136.65602 * 8 7 6 11 11 N 1.48141 * 104.61840 * 95.00684 * 10 8 7 12 12 C 1.34775 * 127.84034 * 219.58374 * 11 10 8 13 13 O 1.21694 * 120.00532 * 180.02562 * 12 11 10 14 14 C 1.46381 * 119.99977 * 0.02562 * 12 11 10 15 15 H 1.07998 * 119.99711 * 0.02562 * 14 12 11 16 16 C 1.40044 * 120.00267 * 179.97438 * 14 12 11 17 17 N 1.30676 * 120.00066 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 120.00311 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47148 * 89.99643 * 18 16 14 20 20 H 1.48498 * 109.47433 * 210.00226 * 18 16 14 21 21 H 1.48504 * 109.46786 * 329.99781 * 18 16 14 22 22 C 1.48147 * 104.32467 * 39.84276 * 11 10 8 23 23 C 1.54286 * 110.34269 * 252.19311 * 8 7 6 24 24 C 1.52993 * 110.34154 * 0.02562 * 23 8 7 25 25 C 1.52995 * 110.34130 * 122.15354 * 23 8 7 26 26 C 1.38164 * 120.05140 * 359.49015 * 7 6 5 27 27 H 1.08994 * 109.47371 * 300.00286 * 1 2 3 28 28 H 1.09003 * 109.47029 * 60.00458 * 1 2 3 29 29 H 1.09005 * 109.46945 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.02762 * 359.97438 * 4 3 2 31 31 H 1.07995 * 119.97268 * 180.02562 * 5 4 3 32 32 H 1.07999 * 119.94697 * 180.28085 * 6 5 4 33 33 H 1.08996 * 110.41371 * 336.21983 * 10 8 7 34 34 H 1.09005 * 110.50801 * 213.83899 * 10 8 7 35 35 H 0.96996 * 120.00035 * 179.97438 * 17 16 14 36 36 H 1.09000 * 110.40622 * 78.93962 * 22 11 10 37 37 H 1.08998 * 110.40886 * 201.37295 * 22 11 10 38 38 H 1.09000 * 109.47962 * 53.80832 * 24 23 8 39 39 H 1.09003 * 109.47410 * 173.81298 * 24 23 8 40 40 H 1.09004 * 109.47744 * 293.80691 * 24 23 8 41 41 H 1.09007 * 109.47110 * 59.99682 * 25 23 8 42 42 H 1.08998 * 109.47382 * 179.97438 * 25 23 8 43 43 H 1.09003 * 109.47298 * 300.00309 * 25 23 8 44 44 H 1.07998 * 120.02349 * 180.22977 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6759 0.0064 7 6 4.0559 2.5172 0.0006 8 6 5.5607 2.5983 0.0011 9 1 5.8851 3.6058 0.2619 10 6 6.1532 1.5710 0.9896 11 7 6.4649 0.3867 0.1559 12 6 6.2980 -0.9131 0.4706 13 8 6.6052 -1.7772 -0.3293 14 6 5.7470 -1.2855 1.7746 15 1 5.4739 -0.5186 2.4843 16 6 5.5730 -2.6361 2.1015 17 7 5.9020 -3.5639 1.2422 18 14 4.8693 -3.1113 3.7653 19 1 3.3901 -3.2004 3.6699 20 1 5.4190 -4.4277 4.1777 21 1 5.2394 -2.0833 4.7712 22 6 7.0078 0.9552 -1.0999 23 6 6.1202 2.1924 -1.3782 24 6 4.9782 1.8308 -2.3299 25 6 6.9613 3.3273 -1.9659 26 6 3.4310 1.2849 0.0001 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 0.2127 2.3204 0.0005 31 1 1.3339 4.5114 0.0019 32 1 3.7921 4.6381 0.0114 33 1 5.4213 1.3145 1.7555 34 1 7.0611 1.9623 1.4486 35 1 5.7819 -4.4994 1.4687 36 1 8.0475 1.2531 -0.9639 37 1 6.9214 0.2337 -1.9123 38 1 4.2621 2.6518 -2.3669 39 1 5.3792 1.6532 -3.3278 40 1 4.4794 0.9296 -1.9733 41 1 7.7924 3.5481 -1.2961 42 1 7.3494 3.0258 -2.9388 43 1 6.3416 4.2166 -2.0813 44 1 4.0206 0.3801 -0.0007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529727147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:11 Heat of formation + Delta-G solvation = -45.721158 kcal Electronic energy + Delta-G solvation = -26178.264835 eV Core-core repulsion = 22674.900116 eV Total energy + Delta-G solvation = -3503.364719 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -40.39716 -39.00625 -37.00019 -35.94969 -32.68678 -32.34825 -31.44709 -30.20242 -27.96182 -27.25116 -26.98775 -26.47559 -24.66406 -23.21766 -21.94904 -20.81490 -19.23366 -18.57497 -17.41407 -16.45105 -16.01520 -15.69144 -15.51949 -15.44849 -14.84249 -14.39124 -13.91127 -13.84867 -13.72800 -13.27929 -13.18721 -12.69978 -12.57761 -12.35951 -12.14789 -11.86399 -11.74503 -11.51734 -11.50585 -11.17112 -11.05053 -11.04242 -10.89606 -10.82943 -10.58133 -10.46996 -10.30557 -10.11112 -10.08590 -9.96622 -8.81544 -8.40383 -7.88487 -7.59989 -7.19601 -6.16256 -4.59782 1.59880 1.75545 3.17257 3.23645 3.26681 3.55581 4.02453 4.11982 4.57669 4.62452 4.87505 4.93468 5.00998 5.13096 5.19943 5.24722 5.27915 5.42680 5.55176 5.57331 5.63277 5.69221 5.75058 5.85290 5.88197 5.90940 5.95442 6.07706 6.16912 6.24660 6.36976 6.41918 6.42967 6.50269 6.56376 6.64475 6.69072 6.71192 6.78413 6.95983 7.12079 7.33895 7.48362 7.74468 8.14496 8.46470 9.06484 9.55826 10.61335 10.80384 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011022 B = 0.007061 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.691434 B = 3964.458963 C = 5611.727393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.125 3.875 4 C -0.219 4.219 5 C -0.089 4.089 6 C -0.160 4.160 7 C -0.022 4.022 8 C -0.061 4.061 9 H 0.085 0.915 10 C 0.120 3.880 11 N -0.642 5.642 12 C 0.577 3.423 13 O -0.575 6.575 14 C -0.535 4.535 15 H 0.068 0.932 16 C 0.089 3.911 17 N -0.767 5.767 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.265 1.265 22 C 0.117 3.883 23 C -0.069 4.069 24 C -0.136 4.136 25 C -0.133 4.133 26 C -0.128 4.128 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.268 0.732 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 14.760 -2.394 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.222 6.222 3 C 0.080 3.920 4 C -0.238 4.238 5 C -0.108 4.108 6 C -0.179 4.179 7 C -0.022 4.022 8 C -0.080 4.080 9 H 0.103 0.897 10 C -0.005 4.005 11 N -0.382 5.382 12 C 0.384 3.616 13 O -0.457 6.457 14 C -0.572 4.572 15 H 0.087 0.913 16 C -0.130 4.130 17 N -0.396 5.396 18 Si 0.728 3.272 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.007 4.007 23 C -0.071 4.071 24 C -0.193 4.193 25 C -0.191 4.191 26 C -0.147 4.147 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.363 13.712 -2.850 15.823 hybrid contribution -0.737 0.045 0.886 1.154 sum -8.100 13.757 -1.964 16.085 Atomic orbital electron populations 1.22991 0.79247 1.03653 1.00706 1.86212 1.20589 1.26896 1.88521 1.19084 0.92482 0.83972 0.96446 1.21125 0.99472 0.92577 1.10616 1.20739 0.94478 0.96499 0.99046 1.20864 0.93584 0.97641 1.05772 1.19470 0.94911 0.91945 0.95904 1.21327 0.90536 0.99884 0.96254 0.89653 1.22072 0.98740 0.86016 0.93701 1.49269 1.68518 1.05141 1.15235 1.17985 0.78139 0.77308 0.88162 1.90621 1.55850 1.46768 1.52485 1.20836 1.44519 0.92172 0.99678 0.91347 1.25681 0.93481 0.96295 0.97567 1.70019 1.35259 1.00653 1.33696 0.86425 0.79653 0.78361 0.82714 1.19664 1.20468 1.18890 1.22111 0.95008 0.93264 0.90330 1.21572 0.95803 0.95725 0.93957 1.22010 0.97500 1.01892 0.97931 1.21829 0.99235 0.97351 1.00648 1.20748 0.91335 0.99737 1.02863 0.93023 0.93121 0.88505 0.86210 0.86505 0.86467 0.90251 0.93009 0.92139 0.93400 0.91028 0.92884 0.93395 0.91485 0.92569 0.92622 0.92824 0.83228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.31 -5.55 10.50 -19.44 -0.20 -5.75 16 3 C 0.13 2.17 6.69 -39.22 -0.26 1.91 16 4 C -0.22 -3.07 9.04 -39.43 -0.36 -3.43 16 5 C -0.09 -1.14 10.04 -39.61 -0.40 -1.53 16 6 C -0.16 -2.14 9.52 -39.56 -0.38 -2.52 16 7 C -0.02 -0.35 3.11 -104.64 -0.32 -0.67 16 8 C -0.06 -0.92 2.93 -90.37 -0.26 -1.18 16 9 H 0.09 1.07 7.57 -51.93 -0.39 0.68 16 10 C 0.12 2.21 5.79 -2.41 -0.01 2.20 16 11 N -0.64 -14.64 2.51 -170.71 -0.43 -15.07 16 12 C 0.58 16.54 7.10 -12.99 -0.09 16.45 16 13 O -0.58 -18.89 15.29 5.19 0.08 -18.81 16 14 C -0.54 -15.21 9.07 -35.63 -0.32 -15.53 16 15 H 0.07 1.81 6.50 -52.49 -0.34 1.47 16 16 C 0.09 2.53 5.50 -17.37 -0.10 2.43 16 17 N -0.77 -23.26 11.83 55.55 0.66 -22.60 16 18 Si 0.90 20.61 29.56 -169.99 -5.02 15.59 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.26 -5.84 7.11 56.52 0.40 -5.43 16 22 C 0.12 2.26 6.15 -2.19 -0.01 2.25 16 23 C -0.07 -1.06 1.03 -152.90 -0.16 -1.22 16 24 C -0.14 -2.16 7.16 37.15 0.27 -1.89 16 25 C -0.13 -1.59 8.26 37.16 0.31 -1.28 16 26 C -0.13 -2.41 6.59 -39.44 -0.26 -2.67 16 27 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.28 8.01 -52.49 -0.42 0.86 16 33 H 0.08 1.57 6.08 -51.93 -0.32 1.25 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.27 7.38 8.29 -40.82 -0.34 7.05 16 36 H 0.05 0.86 7.84 -51.93 -0.41 0.45 16 37 H 0.07 1.53 7.61 -51.93 -0.40 1.14 16 38 H 0.05 0.78 7.09 -51.93 -0.37 0.41 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.27 5.94 -51.93 -0.31 0.97 16 41 H 0.06 0.63 8.10 -51.92 -0.42 0.21 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.15 3.44 5.78 -52.49 -0.30 3.14 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -34.78 347.98 -7.52 -42.30 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.47 Total: 4.43 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.37 Total: -5.33 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.23 Total: -37.67 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.12 Total: -24.56 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.78 -7.52 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529727147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.418 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.87 seconds