Wall clock time and date at job start Tue Mar 31 2020 09:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47210 * 2 1 4 4 C 1.38104 * 119.95464 * 264.99816 * 3 2 1 5 5 C 1.38505 * 120.38658 * 179.97438 * 4 3 2 6 6 C 1.37830 * 120.30225 * 359.97438 * 5 4 3 7 7 C 1.39668 * 119.90565 * 0.02562 * 6 5 4 8 8 C 1.47543 * 120.18618 * 179.97438 * 7 6 5 9 9 O 1.21591 * 119.99488 * 228.57893 * 8 7 6 10 10 N 1.34773 * 120.00250 * 48.58532 * 8 7 6 11 11 C 1.46933 * 120.63102 * 5.27277 * 10 8 7 12 12 C 1.53622 * 108.53812 * 126.37189 * 11 10 8 13 13 C 1.53039 * 109.24468 * 54.85774 * 12 11 10 14 14 C 1.50698 * 109.45201 * 178.49082 * 13 12 11 15 15 H 1.08003 * 119.99925 * 120.05849 * 14 13 12 16 16 C 1.37879 * 120.00165 * 300.06758 * 14 13 12 17 17 N 1.31505 * 120.00074 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99686 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47406 * 59.99753 * 18 16 14 20 20 H 1.48508 * 109.47058 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47481 * 299.99816 * 18 16 14 22 22 C 1.53038 * 109.53764 * 298.50999 * 13 12 11 23 23 C 1.46926 * 120.63000 * 185.56066 * 10 8 7 24 24 C 1.38660 * 119.95979 * 85.01788 * 3 2 1 25 25 O 1.35653 * 120.14899 * 0.02562 * 24 3 2 26 26 H 1.09003 * 109.46796 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46986 * 300.00221 * 1 2 3 28 28 H 1.09000 * 109.47080 * 60.00866 * 1 2 3 29 29 H 1.08995 * 109.47330 * 239.99377 * 2 1 3 30 30 H 1.09000 * 109.47191 * 119.99679 * 2 1 3 31 31 H 1.07995 * 119.80712 * 359.72447 * 4 3 2 32 32 H 1.08003 * 119.84641 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.04331 * 180.02562 * 6 5 4 34 34 H 1.08993 * 109.58645 * 246.20548 * 11 10 8 35 35 H 1.08999 * 109.58133 * 6.63242 * 11 10 8 36 36 H 1.08996 * 109.63713 * 294.86792 * 12 11 10 37 37 H 1.08998 * 109.43301 * 174.72774 * 12 11 10 38 38 H 1.09002 * 109.45811 * 58.52995 * 13 12 11 39 39 H 0.97007 * 119.99940 * 180.02562 * 17 16 14 40 40 H 1.08991 * 109.49791 * 301.41180 * 22 13 12 41 41 H 1.09004 * 109.49423 * 181.30936 * 22 13 12 42 42 H 1.08994 * 109.58792 * 353.36830 * 23 10 8 43 43 H 1.09000 * 109.58647 * 113.65633 * 23 10 8 44 44 H 0.96698 * 113.99999 * 90.00506 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0361 -1.1920 5 6 2.8226 3.3418 -1.2025 6 6 2.9590 4.0407 -0.0224 7 6 2.6307 3.4304 1.1903 8 6 2.7749 4.1726 2.4573 9 8 3.3469 3.6604 3.4001 10 7 2.2724 5.4181 2.5696 11 6 1.4794 6.0064 1.4816 12 6 0.1394 6.4873 2.0587 13 6 0.4058 7.4389 3.2272 14 6 -0.9053 7.9425 3.7733 15 1 -1.1703 7.7521 4.8029 16 6 -1.7668 8.6463 2.9586 17 7 -1.4440 8.8784 1.7051 18 14 -3.3923 9.2699 3.6354 19 1 -3.1347 10.1942 4.7687 20 1 -4.1294 9.9910 2.5668 21 1 -4.2049 8.1207 4.1090 22 6 1.1655 6.6964 4.3289 23 6 2.5125 6.2158 3.7799 24 6 2.1648 2.1084 1.1968 25 8 1.8436 1.5049 2.3685 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2602 1.4948 -2.1211 32 1 3.0771 3.8144 -2.1396 33 1 3.3193 5.0587 -0.0354 34 1 2.0188 6.8501 1.0511 35 1 1.2993 5.2547 0.7131 36 1 -0.4362 5.6312 2.4107 37 1 -0.4222 7.0102 1.2845 38 1 1.0024 8.2824 2.8798 39 1 -2.0499 9.3739 1.1320 40 1 0.5804 5.8384 4.6595 41 1 1.3345 7.3683 5.1704 42 1 3.0142 5.6024 4.5283 43 1 3.1365 7.0749 3.5335 44 1 2.5804 1.0369 2.7847 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542906923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:01 Heat of formation + Delta-G solvation = -67.278497 kcal Electronic energy + Delta-G solvation = -25367.155180 eV Core-core repulsion = 21862.855664 eV Total energy + Delta-G solvation = -3504.299516 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.57476 -38.92901 -36.84492 -36.51406 -34.27699 -33.43771 -31.51996 -30.35667 -29.77712 -29.09920 -26.29188 -24.26321 -23.88936 -22.61405 -22.10797 -21.30522 -19.88306 -18.65470 -18.08782 -16.93640 -16.29943 -16.18122 -15.66046 -15.59747 -14.73258 -14.54449 -14.46396 -13.97021 -13.75167 -13.49234 -13.20997 -13.01519 -12.74427 -12.67686 -12.34655 -12.30277 -12.04815 -11.89734 -11.52926 -11.48664 -11.22069 -11.05196 -10.91441 -10.66260 -10.56580 -10.37255 -10.08383 -9.67021 -9.46407 -9.16628 -9.01811 -8.75441 -8.62101 -8.36830 -7.98999 -6.02284 -4.08192 0.93823 1.17694 2.97308 3.30791 3.34966 3.35745 3.38614 3.69703 4.18892 4.41857 4.58376 4.63939 4.81941 5.01593 5.21876 5.27134 5.27399 5.28277 5.37765 5.58634 5.66231 5.77088 5.80203 5.83347 5.90741 5.95359 6.07970 6.14605 6.16493 6.20733 6.28349 6.32105 6.38208 6.46372 6.66743 6.67719 6.90793 7.04918 7.16808 7.29911 7.66876 7.67601 7.90335 7.93158 8.04565 8.41295 8.51782 8.94741 9.56745 11.03285 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.004049 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.615271 B = 6913.245326 C = 7416.070857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.118 4.118 4 C -0.088 4.088 5 C -0.132 4.132 6 C -0.075 4.075 7 C -0.143 4.143 8 C 0.563 3.437 9 O -0.553 6.553 10 N -0.592 5.592 11 C 0.098 3.902 12 C -0.123 4.123 13 C 0.049 3.951 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.123 4.123 23 C 0.112 3.888 24 C 0.157 3.843 25 O -0.484 6.484 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.104 0.896 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.647 -13.829 -7.615 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.118 4.118 4 C -0.107 4.107 5 C -0.150 4.150 6 C -0.094 4.094 7 C -0.147 4.147 8 C 0.351 3.649 9 O -0.433 6.433 10 N -0.323 5.323 11 C -0.023 4.023 12 C -0.161 4.161 13 C 0.030 3.970 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.161 4.161 23 C -0.010 4.010 24 C 0.110 3.890 25 O -0.295 6.295 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.122 0.878 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 8.303 -13.745 -7.366 17.667 hybrid contribution -0.578 0.349 0.332 0.752 sum 7.725 -13.396 -7.034 16.988 Atomic orbital electron populations 1.21735 0.94394 1.01584 1.02674 1.20371 0.96568 0.91746 1.02498 1.20160 1.01952 0.97215 0.92495 1.21045 0.97625 0.94910 0.97073 1.21059 1.01193 0.94694 0.98082 1.21265 0.97470 0.99760 0.90909 1.20384 1.04381 0.95386 0.94536 1.18051 0.78798 0.81205 0.86895 1.90701 1.44800 1.68209 1.39628 1.48147 1.50918 1.14097 1.19111 1.22310 0.94252 0.97213 0.88562 1.22089 0.93054 0.98877 1.02075 1.18635 0.94908 0.92846 0.90566 1.21172 1.02782 1.34044 0.97049 0.92749 1.24946 0.98149 0.95881 0.94904 1.69822 1.36924 1.40841 1.05545 0.86678 0.83856 0.79010 0.78583 1.20302 1.21298 1.20327 1.22004 0.94252 0.99982 0.99897 1.21724 0.98803 0.94061 0.86373 1.18186 0.95350 0.89659 0.85762 1.84717 1.39085 1.71255 1.34445 0.92538 0.91887 0.92680 0.91197 0.90996 0.85484 0.85214 0.84960 0.91934 0.90988 0.94233 0.87766 0.95460 0.92940 0.92873 0.92092 0.90288 0.92065 0.74876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.16 0.37 -1.09 16 2 C -0.07 -0.71 5.78 -27.89 -0.16 -0.87 16 3 C -0.12 -1.38 5.14 -104.52 -0.54 -1.92 16 4 C -0.09 -0.92 9.66 -39.53 -0.38 -1.30 16 5 C -0.13 -1.42 10.02 -39.63 -0.40 -1.82 16 6 C -0.08 -0.99 7.54 -39.20 -0.30 -1.29 16 7 C -0.14 -2.26 4.84 -104.84 -0.51 -2.77 16 8 C 0.56 10.52 6.95 -12.47 -0.09 10.44 16 9 O -0.55 -11.47 15.93 -4.46 -0.07 -11.54 16 10 N -0.59 -11.15 2.97 -173.73 -0.52 -11.67 16 11 C 0.10 1.84 5.29 -3.48 -0.02 1.82 16 12 C -0.12 -2.80 5.17 -26.39 -0.14 -2.93 16 13 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 14 C -0.51 -13.85 8.56 -34.44 -0.29 -14.15 16 15 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.60 11.31 55.43 0.63 -23.98 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.12 -2.60 5.30 -26.61 -0.14 -2.74 16 23 C 0.11 2.11 6.44 -3.71 -0.02 2.09 16 24 C 0.16 2.27 6.66 -38.70 -0.26 2.01 16 25 O -0.48 -7.06 11.67 -28.40 -0.33 -7.39 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 30 H 0.07 0.65 7.69 -51.93 -0.40 0.25 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.13 1.62 7.33 -52.48 -0.38 1.24 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.24 5.12 -51.93 -0.27 0.97 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.10 2.62 6.03 -51.93 -0.31 2.30 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.08 1.48 7.00 -51.93 -0.36 1.11 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.39 4.32 9.06 45.56 0.41 4.73 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -30.96 353.06 -9.07 -40.03 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.92 Total: 5.11 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -3.16 Total: -11.93 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.11 Total: -35.65 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.40 Total: -18.93 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.96 -9.07 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542906923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.250 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds