Wall clock time and date at job start Tue Mar 31 2020 09:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47210 * 2 1 4 4 C 1.38104 * 119.95464 * 264.99816 * 3 2 1 5 5 C 1.38505 * 120.38658 * 179.97438 * 4 3 2 6 6 C 1.37830 * 120.30225 * 359.97438 * 5 4 3 7 7 C 1.39668 * 119.90565 * 0.02562 * 6 5 4 8 8 C 1.47543 * 120.18618 * 179.97438 * 7 6 5 9 9 O 1.21591 * 119.99488 * 228.57893 * 8 7 6 10 10 N 1.34773 * 120.00250 * 48.58532 * 8 7 6 11 11 C 1.46933 * 120.63102 * 5.27277 * 10 8 7 12 12 C 1.53622 * 108.53812 * 126.37189 * 11 10 8 13 13 C 1.53039 * 109.24468 * 54.85774 * 12 11 10 14 14 C 1.50698 * 109.45201 * 178.49082 * 13 12 11 15 15 H 1.08003 * 119.99925 * 120.05849 * 14 13 12 16 16 C 1.37879 * 120.00165 * 300.06758 * 14 13 12 17 17 N 1.31505 * 120.00074 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99686 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47406 * 59.99753 * 18 16 14 20 20 H 1.48508 * 109.47058 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47481 * 299.99816 * 18 16 14 22 22 C 1.53038 * 109.53764 * 298.50999 * 13 12 11 23 23 C 1.46926 * 120.63000 * 185.56066 * 10 8 7 24 24 C 1.38660 * 119.95979 * 85.01788 * 3 2 1 25 25 O 1.35653 * 120.14899 * 0.02562 * 24 3 2 26 26 H 1.09003 * 109.46796 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46986 * 300.00221 * 1 2 3 28 28 H 1.09000 * 109.47080 * 60.00866 * 1 2 3 29 29 H 1.08995 * 109.47330 * 239.99377 * 2 1 3 30 30 H 1.09000 * 109.47191 * 119.99679 * 2 1 3 31 31 H 1.07995 * 119.80712 * 359.72447 * 4 3 2 32 32 H 1.08003 * 119.84641 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.04331 * 180.02562 * 6 5 4 34 34 H 1.08993 * 109.58645 * 246.20548 * 11 10 8 35 35 H 1.08999 * 109.58133 * 6.63242 * 11 10 8 36 36 H 1.08996 * 109.63713 * 294.86792 * 12 11 10 37 37 H 1.08998 * 109.43301 * 174.72774 * 12 11 10 38 38 H 1.09002 * 109.45811 * 58.52995 * 13 12 11 39 39 H 0.97007 * 119.99940 * 180.02562 * 17 16 14 40 40 H 1.08991 * 109.49791 * 301.41180 * 22 13 12 41 41 H 1.09004 * 109.49423 * 181.30936 * 22 13 12 42 42 H 1.08994 * 109.58792 * 353.36830 * 23 10 8 43 43 H 1.09000 * 109.58647 * 113.65633 * 23 10 8 44 44 H 0.96698 * 113.99999 * 90.00506 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0361 -1.1920 5 6 2.8226 3.3418 -1.2025 6 6 2.9590 4.0407 -0.0224 7 6 2.6307 3.4304 1.1903 8 6 2.7749 4.1726 2.4573 9 8 3.3469 3.6604 3.4001 10 7 2.2724 5.4181 2.5696 11 6 1.4794 6.0064 1.4816 12 6 0.1394 6.4873 2.0587 13 6 0.4058 7.4389 3.2272 14 6 -0.9053 7.9425 3.7733 15 1 -1.1703 7.7521 4.8029 16 6 -1.7668 8.6463 2.9586 17 7 -1.4440 8.8784 1.7051 18 14 -3.3923 9.2699 3.6354 19 1 -3.1347 10.1942 4.7687 20 1 -4.1294 9.9910 2.5668 21 1 -4.2049 8.1207 4.1090 22 6 1.1655 6.6964 4.3289 23 6 2.5125 6.2158 3.7799 24 6 2.1648 2.1084 1.1968 25 8 1.8436 1.5049 2.3685 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2602 1.4948 -2.1211 32 1 3.0771 3.8144 -2.1396 33 1 3.3193 5.0587 -0.0354 34 1 2.0188 6.8501 1.0511 35 1 1.2993 5.2547 0.7131 36 1 -0.4362 5.6312 2.4107 37 1 -0.4222 7.0102 1.2845 38 1 1.0024 8.2824 2.8798 39 1 -2.0499 9.3739 1.1320 40 1 0.5804 5.8384 4.6595 41 1 1.3345 7.3683 5.1704 42 1 3.0142 5.6024 4.5283 43 1 3.1365 7.0749 3.5335 44 1 2.5804 1.0369 2.7847 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542906923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:58 Heat of formation + Delta-G solvation = -85.195579 kcal Electronic energy + Delta-G solvation = -25367.932123 eV Core-core repulsion = 21862.855664 eV Total energy + Delta-G solvation = -3505.076459 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.48 seconds Orbital eigenvalues (eV) -41.77061 -40.21292 -38.36019 -37.65703 -35.45507 -34.99975 -33.16476 -31.91508 -31.08767 -30.00031 -28.10133 -25.59165 -24.90939 -24.19185 -23.61968 -22.28762 -21.40502 -20.09876 -19.19121 -18.59097 -17.94454 -17.44521 -16.92738 -16.65588 -16.47788 -15.90821 -15.72627 -14.99392 -14.93974 -14.80761 -14.66606 -14.47127 -14.29533 -14.06787 -13.81493 -13.36587 -13.26884 -13.14460 -12.95402 -12.82836 -12.59044 -12.49564 -12.34853 -12.16914 -12.01373 -11.80375 -11.56742 -11.49566 -11.04195 -11.00648 -10.75832 -10.41973 -9.84444 -9.57353 -9.54971 -8.09295 -6.22463 -0.07108 0.25969 1.41556 1.42145 1.49651 1.62042 2.03996 2.43088 2.64091 3.17178 3.22522 3.42190 3.74891 3.99490 4.04912 4.21463 4.25589 4.29258 4.33337 4.42576 4.47932 4.51495 4.52974 4.61196 4.66576 4.72755 4.82423 4.92564 5.00246 5.04700 5.10776 5.14516 5.18931 5.27467 5.38094 5.38790 5.40872 5.50220 5.54581 5.62274 5.83556 5.95593 6.07797 6.36934 6.41684 6.72440 6.85787 7.06077 7.44962 8.94271 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.004049 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.615271 B = 6913.245326 C = 7416.070857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.078 4.078 5 C -0.125 4.125 6 C -0.083 4.083 7 C -0.176 4.176 8 C 0.560 3.440 9 O -0.581 6.581 10 N -0.597 5.597 11 C 0.114 3.886 12 C -0.113 4.113 13 C 0.047 3.953 14 C -0.539 4.539 15 H 0.046 0.954 16 C 0.020 3.980 17 N -0.910 5.910 18 Si 0.948 3.052 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.278 1.278 22 C -0.114 4.114 23 C 0.117 3.883 24 C 0.136 3.864 25 O -0.502 6.502 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.138 0.862 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.016 0.984 37 H 0.082 0.918 38 H 0.010 0.990 39 H 0.263 0.737 40 H 0.034 0.966 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.035 -14.801 -9.819 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.121 4.121 4 C -0.096 4.096 5 C -0.143 4.143 6 C -0.102 4.102 7 C -0.180 4.180 8 C 0.350 3.650 9 O -0.463 6.463 10 N -0.328 5.328 11 C -0.008 4.008 12 C -0.152 4.152 13 C 0.029 3.971 14 C -0.577 4.577 15 H 0.064 0.936 16 C -0.179 4.179 17 N -0.550 5.550 18 Si 0.774 3.226 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.203 1.203 22 C -0.152 4.152 23 C -0.005 4.005 24 C 0.090 3.910 25 O -0.315 6.315 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.182 0.818 32 H 0.181 0.819 33 H 0.155 0.845 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.035 0.965 37 H 0.100 0.900 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 8.700 -14.720 -9.571 19.595 hybrid contribution -0.701 0.605 0.991 1.356 sum 7.998 -14.116 -8.580 18.353 Atomic orbital electron populations 1.21716 0.94887 1.02322 1.01298 1.20442 0.95986 0.90600 1.03974 1.20454 1.01416 0.98243 0.91945 1.21533 0.95366 0.94822 0.97847 1.21460 0.99664 0.94762 0.98369 1.21423 0.97593 1.00300 0.90864 1.20333 1.07598 0.96086 0.93943 1.18591 0.77804 0.80778 0.87823 1.90665 1.45972 1.68598 1.41096 1.48184 1.51128 1.14503 1.18986 1.22128 0.91995 0.98122 0.88559 1.21861 0.94991 0.97380 1.00958 1.18597 0.93933 0.92767 0.91833 1.21512 1.04386 1.34845 0.96959 0.93611 1.25615 1.01056 0.96028 0.95228 1.69926 1.37832 1.40979 1.06218 0.85767 0.80179 0.78432 0.78185 1.19796 1.20532 1.20319 1.21853 0.95012 0.99019 0.99298 1.21648 0.97427 0.94740 0.86721 1.18493 0.96274 0.89630 0.86577 1.84678 1.40095 1.71518 1.35195 0.90796 0.94882 0.92367 0.88304 0.90952 0.81778 0.81862 0.84464 0.90574 0.89188 0.96486 0.89970 0.97224 0.92812 0.94678 0.91372 0.90156 0.90296 0.73757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.89 71.98 0.71 -1.91 16 2 C -0.07 -1.19 5.78 29.85 0.17 -1.02 16 3 C -0.12 -2.56 5.14 -19.80 -0.10 -2.66 16 4 C -0.08 -1.31 9.66 22.30 0.22 -1.09 16 5 C -0.12 -2.23 10.02 22.24 0.22 -2.01 16 6 C -0.08 -2.03 7.54 22.52 0.17 -1.86 16 7 C -0.18 -5.47 4.84 -20.01 -0.10 -5.57 16 8 C 0.56 21.16 6.95 86.70 0.60 21.76 16 9 O -0.58 -24.61 15.93 5.31 0.08 -24.53 16 10 N -0.60 -22.63 2.97 -821.82 -2.44 -25.07 16 11 C 0.11 4.23 5.29 86.51 0.46 4.68 16 12 C -0.11 -5.30 5.17 30.82 0.16 -5.14 16 13 C 0.05 2.34 2.06 -11.51 -0.02 2.32 16 14 C -0.54 -29.84 8.56 25.60 0.22 -29.62 16 15 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 16 C 0.02 1.09 5.30 84.66 0.45 1.54 16 17 N -0.91 -50.69 11.31 21.45 0.24 -50.44 16 18 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 C -0.11 -4.91 5.30 30.67 0.16 -4.75 16 23 C 0.12 4.42 6.44 86.36 0.56 4.98 16 24 C 0.14 3.89 6.66 22.84 0.15 4.04 16 25 O -0.50 -14.99 11.67 -80.37 -0.94 -15.93 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 1.07 8.05 -2.39 -0.02 1.05 16 30 H 0.07 1.18 7.69 -2.39 -0.02 1.16 16 31 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.14 3.11 7.33 -2.91 -0.02 3.09 16 34 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.09 3.03 5.12 -2.39 -0.01 3.02 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 4.22 6.03 -2.39 -0.01 4.21 16 38 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16 40 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.08 3.03 7.00 -2.39 -0.02 3.02 16 43 H 0.08 2.70 8.14 -2.39 -0.02 2.69 16 44 H 0.40 9.25 9.06 -74.06 -0.67 8.58 16 Total: -1.00 -68.42 353.06 3.34 -65.08 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.33 Total: 21.72 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 4.03 Total: -16.31 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -2.19 Total: -75.51 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.85 Total: -40.46 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -68.42 3.34 -65.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542906923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.114 kcal (2) G-P(sol) polarization free energy of solvation -68.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.48 seconds