Wall clock time and date at job start Tue Mar 31 2020 08:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.51252 * 2 1 4 4 C 1.38230 * 120.00346 * 269.89931 * 3 2 1 5 5 C 1.38235 * 120.00326 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.99814 * 359.97438 * 5 4 3 7 7 C 1.38239 * 120.00062 * 0.02871 * 6 5 4 8 8 C 1.38235 * 120.00123 * 359.97128 * 7 6 5 9 9 C 1.53293 * 109.55533 * 120.13215 * 2 1 3 10 10 N 1.47146 * 108.38559 * 67.64603 * 9 2 1 11 11 C 1.34776 * 120.98145 * 230.55612 * 10 9 2 12 12 O 1.21286 * 120.00038 * 359.97438 * 11 10 9 13 13 C 1.50706 * 120.00281 * 179.97438 * 11 10 9 14 14 C 1.52993 * 109.47289 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.46939 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99831 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99649 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00177 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99813 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46916 * 60.00272 * 19 17 15 21 21 H 1.48497 * 109.47056 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47287 * 300.00307 * 19 17 15 23 23 C 1.47151 * 118.03945 * 50.53827 * 10 9 2 24 24 C 1.53306 * 108.38022 * 309.46384 * 23 10 9 25 25 O 1.42963 * 109.22262 * 52.30144 * 24 23 10 26 26 H 1.08998 * 109.47095 * 59.99369 * 1 2 3 27 27 H 1.09002 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46565 * 299.99372 * 1 2 3 29 29 H 1.08000 * 120.00356 * 359.97438 * 4 3 2 30 30 H 1.08000 * 120.00616 * 179.70664 * 5 4 3 31 31 H 1.08001 * 120.00299 * 179.97438 * 6 5 4 32 32 H 1.08005 * 120.00087 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.00181 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.68287 * 187.36923 * 9 2 1 35 35 H 1.08993 * 109.68265 * 307.92110 * 9 2 1 36 36 H 1.08997 * 109.47077 * 300.00458 * 13 11 10 37 37 H 1.09003 * 109.46605 * 59.99609 * 13 11 10 38 38 H 1.08997 * 109.47450 * 300.00248 * 14 13 11 39 39 H 1.09002 * 109.47161 * 60.00530 * 14 13 11 40 40 H 0.97006 * 119.99967 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.68698 * 189.74540 * 23 10 9 42 42 H 1.08992 * 109.71527 * 69.19953 * 23 10 9 43 43 H 1.09006 * 109.51129 * 292.37413 * 24 23 10 44 44 H 1.09003 * 109.50944 * 172.22677 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0333 1.4204 0.0000 4 6 2.2662 2.0712 -1.1971 5 6 2.7284 3.3740 -1.1971 6 6 2.9573 4.0262 0.0001 7 6 2.7245 3.3753 1.1973 8 6 2.2623 2.0725 1.1973 9 6 2.0431 -0.7251 1.2493 10 7 1.6980 -2.1508 1.1330 11 6 1.0738 -2.7977 2.1372 12 8 0.7886 -2.2045 3.1559 13 6 0.7302 -4.2581 1.9943 14 6 0.0329 -4.7448 3.2661 15 6 -0.3112 -6.2051 3.1229 16 1 -0.0576 -6.7331 2.2156 17 6 -0.9489 -6.8670 4.1506 18 7 -1.2573 -6.2240 5.2556 19 14 -1.3762 -8.6768 3.9728 20 1 -0.1329 -9.4601 3.7584 21 1 -2.0528 -9.1492 5.2073 22 1 -2.2829 -8.8596 2.8111 23 6 2.0542 -2.8494 -0.1122 24 6 1.5405 -2.0207 -1.2953 25 8 2.0075 -0.6757 -1.1659 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 2.0878 1.5617 -2.1324 30 1 2.9149 3.8810 -2.1323 31 1 3.3188 5.0439 0.0002 32 1 2.9029 3.8850 2.1326 33 1 2.0800 1.5642 2.1325 34 1 3.1251 -0.6139 1.3199 35 1 1.5716 -0.3046 2.1375 36 1 0.0658 -4.3932 1.1408 37 1 1.6433 -4.8325 1.8383 38 1 0.6977 -4.6098 4.1193 39 1 -0.8802 -4.1704 3.4225 40 1 -1.7063 -6.6897 5.9785 41 1 1.5899 -3.8355 -0.1257 42 1 3.1371 -2.9525 -0.1791 43 1 0.4505 -2.0289 -1.2995 44 1 1.9121 -2.4472 -2.2270 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584563448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:54 Heat of formation + Delta-G solvation = -75.836139 kcal Electronic energy + Delta-G solvation = -24909.801999 eV Core-core repulsion = 21405.131396 eV Total energy + Delta-G solvation = -3504.670603 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88675 -40.31935 -39.16533 -35.87332 -35.64143 -34.66918 -32.98859 -31.81260 -30.63774 -30.00666 -28.65725 -26.86482 -25.26004 -23.94647 -23.20444 -22.92125 -20.95067 -19.90176 -18.99558 -18.24639 -17.67398 -17.42250 -16.94223 -16.76967 -16.41922 -16.26199 -15.83853 -15.44930 -15.32660 -15.05014 -14.75557 -14.38857 -14.19528 -14.17989 -13.96632 -13.50673 -13.40663 -13.19886 -13.15436 -12.89086 -12.78775 -12.50941 -12.47529 -12.13580 -11.94795 -11.90775 -11.60884 -11.47785 -11.33612 -11.18572 -10.71895 -10.56721 -9.82442 -9.78102 -9.52367 -8.18529 -6.32936 0.37363 0.50160 1.41957 1.46485 1.54152 1.60284 1.84291 2.42522 2.56507 2.88629 3.14510 3.47875 3.63344 3.69574 3.82963 4.01534 4.07169 4.16386 4.19453 4.27873 4.30438 4.38364 4.43903 4.50029 4.51424 4.55564 4.65536 4.68852 4.71661 4.84032 4.86641 5.03639 5.04931 5.09513 5.16548 5.37275 5.48894 5.57684 5.59945 5.61307 5.63158 5.83362 6.08274 6.12761 6.15676 6.28429 6.85038 7.16412 7.37503 8.94015 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.031834 B = 0.002926 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.355712 B = 9565.918002 C =10125.127152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.156 3.844 3 C -0.087 4.087 4 C -0.101 4.101 5 C -0.124 4.124 6 C -0.120 4.120 7 C -0.126 4.126 8 C -0.129 4.129 9 C 0.092 3.908 10 N -0.616 5.616 11 C 0.513 3.487 12 O -0.585 6.585 13 C -0.114 4.114 14 C 0.044 3.956 15 C -0.543 4.543 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.289 1.289 22 H -0.261 1.261 23 C 0.064 3.936 24 C 0.043 3.957 25 O -0.371 6.371 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.132 0.868 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.104 0.896 38 H -0.020 1.020 39 H -0.019 1.019 40 H 0.263 0.737 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.486 16.930 -19.024 27.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.116 3.884 3 C -0.087 4.087 4 C -0.119 4.119 5 C -0.142 4.142 6 C -0.138 4.138 7 C -0.144 4.144 8 C -0.147 4.147 9 C -0.031 4.031 10 N -0.350 5.350 11 C 0.304 3.696 12 O -0.465 6.465 13 C -0.154 4.154 14 C 0.006 3.994 15 C -0.581 4.581 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.186 1.186 21 H -0.215 1.215 22 H -0.186 1.186 23 C -0.057 4.057 24 C -0.034 4.034 25 O -0.290 6.290 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.150 0.850 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.122 0.878 38 H -0.001 1.001 39 H 0.000 1.000 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.382 17.296 -18.461 26.981 hybrid contribution -0.604 -0.963 1.039 1.540 sum 8.777 16.333 -17.423 25.443 Atomic orbital electron populations 1.22294 0.94343 1.02532 1.03168 1.20313 0.93350 0.89471 0.85251 1.19435 1.01443 0.93247 0.94593 1.21111 0.98245 0.94976 0.97590 1.21490 0.98944 0.94424 0.99364 1.21536 0.99135 1.01010 0.92128 1.21381 0.99183 0.94202 0.99599 1.21160 1.00163 0.96128 0.97247 1.22262 1.00593 0.81171 0.99042 1.48269 1.59043 1.10465 1.17213 1.21464 0.75669 0.90474 0.82014 1.90643 1.55095 1.69771 1.30966 1.21647 1.02768 0.89570 1.01413 1.18678 0.93716 0.95009 0.91959 1.21672 1.38306 0.95750 1.02351 0.90413 1.26149 0.95594 1.03944 0.94766 1.70176 1.42034 1.38851 1.06758 0.85371 0.78921 0.78327 0.77617 1.18634 1.21456 1.18572 1.22777 1.02602 0.97841 0.82522 1.23255 0.99761 0.81287 0.99086 1.87968 1.72365 1.26303 1.42319 0.90250 0.92352 0.92259 0.84977 0.83555 0.83524 0.84271 0.86518 0.90618 0.90147 0.87602 0.87784 1.00123 1.00017 0.92861 0.86828 0.89125 0.92054 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.08 71.98 0.58 -3.43 16 2 C 0.16 3.69 0.94 -11.44 -0.01 3.68 16 3 C -0.09 -1.92 4.84 -19.87 -0.10 -2.02 16 4 C -0.10 -1.93 9.35 22.27 0.21 -1.72 16 5 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 6 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 7 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 8 C -0.13 -2.81 9.15 22.27 0.20 -2.60 16 9 C 0.09 2.60 4.34 86.35 0.37 2.97 16 10 N -0.62 -18.33 2.54 -817.35 -2.08 -20.41 16 11 C 0.51 20.52 7.71 87.66 0.68 21.19 16 12 O -0.59 -29.33 15.45 -3.05 -0.05 -29.37 16 13 C -0.11 -4.60 4.01 29.85 0.12 -4.48 16 14 C 0.04 2.46 4.26 29.85 0.13 2.59 16 15 C -0.54 -30.72 9.11 25.60 0.23 -30.49 16 16 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 17 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 18 N -0.94 -59.72 13.29 21.45 0.28 -59.43 16 19 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 20 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 23 C 0.06 1.31 6.54 86.36 0.56 1.88 16 24 C 0.04 0.73 6.60 72.08 0.48 1.21 16 25 O -0.37 -7.89 9.21 -148.98 -1.37 -9.26 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 1.51 6.11 -2.39 -0.01 1.50 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.13 2.33 7.49 -2.91 -0.02 2.31 16 30 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.12 2.67 6.39 -2.91 -0.02 2.65 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.62 5.94 -2.39 -0.01 2.60 16 36 H 0.11 3.67 7.66 -2.39 -0.02 3.65 16 37 H 0.10 3.68 8.01 -2.39 -0.02 3.66 16 38 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 39 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 40 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 41 H 0.11 2.08 6.05 -2.39 -0.01 2.06 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.06 1.09 6.25 -2.38 -0.01 1.07 16 44 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -77.55 352.91 4.39 -73.16 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.99 Total: 15.68 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 4.59 Total: -16.43 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -1.79 Total: -79.84 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.42 Total: -38.64 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -77.55 4.39 -73.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584563448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.674 kcal (2) G-P(sol) polarization free energy of solvation -77.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds